BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493499.2.1
(785 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI480557.1|BI480557 WHE2904_F12_L24ZS Wheat aluminum-str... 119 3e-025
gb|CD490459.1|CD490459 WHE2904_F12_L24ZT CS wheat aluminum-... 90 3e-016
gb|BQ753201.1|BQ753201 WHE4124_C05_F10ZS Wheat salt-stresse... 76 4e-012
gb|BG313174.1|BG313174 WHE2054_F07_L14ZS Wheat salt-stresse... 60 2e-007
gb|BQ752889.1|BQ752889 WHE4120_D01_H02ZS Wheat salt-stresse... 60 2e-007
gb|CA700350.1|CA700350 wkm1c.pk005.e20 wkm1c Triticum aesti... 60 2e-007
gb|CA721277.1|CA721277 wdk9n.pk001.e20 wdk9n Triticum aesti... 60 2e-007
gb|CD453688.1|CD453688 WHE0840_E04_J08ZT CS wheat vernalize... 60 2e-007
gb|CD915387.1|CD915387 G550.125P10F010713 G550 Triticum aes... 60 2e-007
gb|CV765720.1|CV765720 FGAS060107 Triticum aestivum FGAS: L... 60 2e-007
gb|CA625114.1|CA625114 wl1n.pk0123.c12 wl1n Triticum aestiv... 58 1e-006
gb|BQ483975.1|BQ483975 WHE3515_A05_B09ZS Wheat unstressed r... 54 1e-005
gb|AL822298.1|AL822298 AL822298 p:234 Triticum aestivum cDN... 54 1e-005
gb|BE425760.1|BE425760 WHE0316_C11_C11ZS Wheat unstressed s... 52 6e-005
gb|BJ230352.1|BJ230352 BJ230352 Y. Ogihara unpublished cDNA... 52 6e-005
gb|BQ578506.1|BQ578506 WHE0304_F06_L12ZS Wheat unstressed s... 52 6e-005
gb|CK211335.1|CK211335 FGAS023173 Triticum aestivum FGAS: L... 52 6e-005
gb|CK216261.1|CK216261 FGAS028248 Triticum aestivum FGAS: L... 52 6e-005
gb|BE425377.1|BE425377 WHE313_G03_G03ZS Wheat unstressed se... 50 2e-004
gb|CA657291.1|CA657291 wlm0.pk0034.h1 wlm0 Triticum aestivu... 50 2e-004
gb|CD876252.1|CD876252 AZO3.109B21R011126 AZO3 Triticum aes... 50 2e-004
gb|BQ483250.1|BQ483250 WHE3506_D01_G02ZS Wheat unstressed r... 48 0.001
gb|AL824749.1|AL824749 AL824749 p:234 Triticum aestivum cDN... 48 0.001
gb|CA711259.1|CA711259 wdk2c.pk018.m3 wdk2c Triticum aestiv... 48 0.001
gb|CD895871.1|CD895871 G174.101C21F010821 G174 Triticum aes... 48 0.001
gb|BQ837969.1|BQ837969 WHE2905_A11_A21ZS Wheat aluminum-str... 46 0.004
gb|CD926341.1|CD926341 G750.121L03F010711 G750 Triticum aes... 46 0.004
gb|BF474053.1|BF474053 WHE0840_E04_J08ZS Wheat vernalized c... 44 0.014
gb|BJ275225.1|BJ275225 BJ275225 Y. Ogihara unpublished cDNA... 44 0.014
gb|CA604775.1|CA604775 wr1.pk0039.h4 wr1 Triticum aestivum ... 44 0.014
gb|BE428405.1|BE428405 MTD006.F09F990616 ITEC MTD Durum Whe... 42 0.057
gb|BG314280.1|BG314280 WHE2461_E03_J05ZS Triticum monococcu... 42 0.057
gb|BJ295748.1|BJ295748 BJ295748 Y. Ogihara unpublished cDNA... 42 0.057
gb|BE445412.1|BE445412 WHE1136_C06_F12ZS Wheat etiolated se... 40 0.22
gb|BM137436.1|BM137436 WHE0475_B01_C01ZS Wheat Fusarium gra... 40 0.22
gb|BQ838262.1|BQ838262 WHE2908_D04_H08ZS Wheat aluminum-str... 40 0.22
gb|BU100256.1|BU100256 WHE3351_B05_C09ZS Chinese Spring alu... 40 0.22
gb|CD452897.1|CD452897 WHE1136_C06_F12ZT CS wheat etiolated... 40 0.22
gb|CD885680.1|CD885680 G118.100B15R010921 G118 Triticum aes... 40 0.22
gb|CD935556.1|CD935556 OV.101N04R010424 OV Triticum aestivu... 40 0.22
>gb|BI480557.1|BI480557 WHE2904_F12_L24ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2904_F12_L24, mRNA
sequence
Length = 360
Score = 119 bits (60), Expect = 3e-025
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 659 cccacgccgtctcctcgaacacggcgcggtcgacgcgcgccacgctgcccatgctgacgt 718
|||||||| |||||||||||||| ||||||||||||| || ||||| |||| ||| ||||
Sbjct: 359 cccacgccatctcctcgaacacgccgcggtcgacgcgagcgacgctccccaggctcacgt 300
Query: 719 acagaacggagcgcggcgggcgcgcgtccagccacgccaagcag 762
|||| |||||||||| |||| |||||||||||||||||| ||||
Sbjct: 299 acagcacggagcgcgccgggtgcgcgtccagccacgccaggcag 256
>gb|CD490459.1|CD490459 WHE2904_F12_L24ZT CS wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2904_F12_L24, mRNA
sequence
Length = 658
Score = 89.7 bits (45), Expect = 3e-016
Identities = 156/193 (80%)
Strand = Plus / Plus
Query: 345 cccgatgccccactggtgcgtcacatacctcgcgttcactatctgctcggcgaagcacgg 404
||||| ||||||| |||||||||| |||||||||||||| |||| || |||||||||||
Sbjct: 416 cccgacgccccaccggtgcgtcacgtacctcgcgttcaccgtctggtccgcgaagcacgg 475
Query: 405 ctgcacgagcatgggcaccccttcggatatggcctccaccatggatttccacccgcagtg 464
|||| ||||||| ||||| || || | | | ||||| | | || ||||| ||||||||
Sbjct: 476 ctgcgcgagcatcggcacgccggcgcacacgctctccagcgttgagttccagccgcagtg 535
Query: 465 cgtccagaacccacccaccgccgggtgcgccaggacctccctctgcggtgcccacgccac 524
||||||||| | || || ||| ||| |||||||||||| |||||| ||||| |||||
Sbjct: 536 cgtccagaaggcgccgacggcctcgtgggccaggacctccagctgcggcgcccatgccac 595
Query: 525 gatcttgcccctg 537
| ||| ||||||
Sbjct: 596 caccttccccctg 608
>gb|BQ753201.1|BQ753201 WHE4124_C05_F10ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4124_C05_F10, mRNA sequence
Length = 666
Score = 75.8 bits (38), Expect = 4e-012
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||| ||||||| |||||| ||||| |||||||||||||||| |||| |||||
Sbjct: 232 ttccacccgccgtgcgtcacgaacccccccacggccgggtgcgccaggatctccttctgc 173
Query: 511 ggtgcccacg 520
|| |||||||
Sbjct: 172 ggcgcccacg 163
>gb|BG313174.1|BG313174 WHE2054_F07_L14ZS Wheat salt-stressed sheath cDNA library Triticum
aestivum cDNA clone WHE2054_F07_L14, mRNA sequence
Length = 376
Score = 60.0 bits (30), Expect = 2e-007
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 436 gcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgcgcc 495
|||||||| |||| |||||||||| |||||| |||| | ||||||||||||||||||
Sbjct: 217 gcctccacngtggagttccacccgctgtgcgtgaagaaggcgcccaccgccgggtgcgcc 158
Query: 496 aggacctcc 504
|| ||||||
Sbjct: 157 agcacctcc 149
>gb|BQ752889.1|BQ752889 WHE4120_D01_H02ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4120_D01_H02, mRNA sequence
Length = 754
Score = 60.0 bits (30), Expect = 2e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 436 gcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgcgcc 495
||||||||| | || ||||| |||| |||||| |||| | ||||||||||||||||||
Sbjct: 461 gcctccaccgtcgagttccagccgctgtgcgtgaagaaggcgcccaccgccgggtgcgcc 402
Query: 496 aggacctccctctgcggtgcccacgccacgatcttgcc 533
|| |||||| |||||| ||||| ||||||||||||
Sbjct: 401 agcacctcctcctgcggcgcccagctcacgatcttgcc 364
>gb|CA700350.1|CA700350 wkm1c.pk005.e20 wkm1c Triticum aestivum cDNA clone wkm1c.pk005.e20
5' end, mRNA sequence
Length = 504
Score = 60.0 bits (30), Expect = 2e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 436 gcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgcgcc 495
||||||||| |||| ||||| |||| ||| || |||| | ||||||||||||||||||
Sbjct: 402 gcctccaccgtggagttccagccgctgtgggtgaagaaggcgcccaccgccgggtgcgcc 343
Query: 496 aggacctccctctgcggtgcccacgccacgatcttgcc 533
|| |||||| |||||| ||||| |||||||| ||||
Sbjct: 342 agcacctcctcctgcggcgcccagcccacgatcatgcc 305
>gb|CA721277.1|CA721277 wdk9n.pk001.e20 wdk9n Triticum aestivum cDNA clone wdk9n.pk001.e20
5' end, mRNA sequence
Length = 516
Score = 60.0 bits (30), Expect = 2e-007
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 436 gcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgcgcc 495
||||||||| | || ||||| |||| |||||| |||| | ||||||||||||||||||
Sbjct: 405 gcctccaccgtcgagttccagccgctgtgcgtgaagaaggcgcccaccgccgggtgcgcc 464
Query: 496 aggacctccctctgcggtgcccacgccacgatcttgcc 533
|| |||||| |||||| ||||| ||||||||||||
Sbjct: 465 agcacctcctcctgcggcgcccagctcacgatcttgcc 502
>gb|CD453688.1|CD453688 WHE0840_E04_J08ZT CS wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0840_E04_J08, mRNA sequence
Length = 537
Score = 60.0 bits (30), Expect = 2e-007
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 436 gcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgcgcc 495
||||||||| | || ||||| |||| |||||| |||| | ||||||||||||||||||
Sbjct: 405 gcctccaccgtcgagttccagccgctgtgcgtgaagaaggcgcccaccgccgggtgcgcc 464
Query: 496 aggacctccctctgcggtgcccacgccacgatcttgcc 533
|| |||||| |||||| ||||| ||||||||||||
Sbjct: 465 agcacctcctcctgcggcgcccagctcacgatcttgcc 502
>gb|CD915387.1|CD915387 G550.125P10F010713 G550 Triticum aestivum cDNA clone G550125P10,
mRNA sequence
Length = 463
Score = 60.0 bits (30), Expect = 2e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 436 gcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgcgcc 495
||||||||| |||| ||||| |||| ||| || |||| | ||||||||||||||||||
Sbjct: 171 gcctccaccgtggagttccagccgctgtgggtgaagaaggcgcccaccgccgggtgcgcc 112
Query: 496 aggacctccctctgcggtgcccacgccacgatcttgcc 533
|| |||||| |||||| ||||| |||||||| ||||
Sbjct: 111 agcacctcctcctgcggcgcccagcccacgatcatgcc 74
>gb|CV765720.1|CV765720 FGAS060107 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 851
Score = 60.0 bits (30), Expect = 2e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 435 ggcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgcgc 494
|||||||||| |||| ||||| |||| |||||| |||| | |||||||||||||||||
Sbjct: 706 ggcctccaccgtggagttccagccgctgtgcgtgaagaaggcgcccaccgccgggtgcgc 647
Query: 495 caggacctcc 504
||| ||||||
Sbjct: 646 cagcacctcc 637
>gb|CA625114.1|CA625114 wl1n.pk0123.c12 wl1n Triticum aestivum cDNA clone wl1n.pk0123.c12
5' end, mRNA sequence
Length = 503
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 435 ggcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtg 491
|||||||| | |||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct: 136 ggcctccagcgtggagttccacccgcagtgcgtgacgaacccgcccaccgccgggtg 80
>gb|BQ483975.1|BQ483975 WHE3515_A05_B09ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3515_A05_B09, mRNA sequence
Length = 545
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 436 gcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgcgcc 495
||||||||| |||| ||||| |||| ||| || |||| | ||||||||||||||||||
Sbjct: 465 gcctccaccgtggagttccagccgctgtgggtgaagaaggcgcccaccgccgggtgcgcc 406
Query: 496 aggacctccctctgcggtgccca 518
|| |||||| |||||| |||||
Sbjct: 405 agcacctcctcctgcggcgccca 383
>gb|AL822298.1|AL822298 AL822298 p:234 Triticum aestivum cDNA clone D05_p234_plate_22, mRNA
sequence
Length = 628
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 453 ccacccgcagtgcgtccagaacccacccaccgccgggtgcgccagga 499
|||||| ||||||||| ||| || ||||||||||||||||||||||
Sbjct: 528 ccacccacagtgcgtcatgaatccgcccaccgccgggtgcgccagga 482
>gb|BE425760.1|BE425760 WHE0316_C11_C11ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0316_C11_C11, mRNA
sequence
Length = 372
Score = 52.0 bits (26), Expect = 6e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 436 gcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgcgcc 495
||||||||| | || ||||| |||| |||||| |||| | ||||||||||||||||||
Sbjct: 192 gcctccaccgtcgagttccagccgctgtgcgtgaagaaggcgcccaccgccgggtgcgcc 133
Query: 496 aggacctccctctgcggtgcccacgccacgatcttgcc 533
|| |||||| ||||| ||||| ||||||||||||
Sbjct: 132 agcacctcctcttgcggcgcccagctcacgatcttgcc 95
>gb|BJ230352.1|BJ230352 BJ230352 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl22g03 3', mRNA sequence
Length = 562
Score = 52.0 bits (26), Expect = 6e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 446 tggatttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccagga 499
|||| |||||||||||||||||| || || |||||||||||||||| |||||
Sbjct: 471 tggagttccacccgcagtgcgtcagaaagccgcccaccgccgggtgcgacagga 524
>gb|BQ578506.1|BQ578506 WHE0304_F06_L12ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0304_F06_L12, mRNA
sequence
Length = 644
Score = 52.0 bits (26), Expect = 6e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
||||||||| ||||||| |||||| ||||| |||||||||||||||| ||| |||||
Sbjct: 122 ttccacccggcgtgcgtcacgaacccccccacggccgggtgcgccaggatgtccttctgc 63
Query: 511 gg 512
||
Sbjct: 62 gg 61
>gb|CK211335.1|CK211335 FGAS023173 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1129
Score = 52.0 bits (26), Expect = 6e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctcc 504
|||||||||| ||||||||||||||| ||||| || ||||||||| ||||||
Sbjct: 512 ttccacccgccgtgcgtccagaacccgcccacggcgccgtgcgccagcacctcc 565
>gb|CK216261.1|CK216261 FGAS028248 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1093
Score = 52.0 bits (26), Expect = 6e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 446 tggatttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccc 505
|||| ||||| || ||||||||| |||| || |||||||||||||||| ||||| |
Sbjct: 463 tggagttccagccacagtgcgtcaagaagccgcccaccgccgggtgcgacaggatggtca 522
Query: 506 tctgcggtgcccac 519
||||||||||||||
Sbjct: 523 tctgcggtgcccac 536
>gb|BE425377.1|BE425377 WHE313_G03_G03ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE313_G03_G03, mRNA
sequence
Length = 572
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccagga 499
||||||||| ||||||| |||||| ||||| ||||||||||||||||
Sbjct: 49 ttccacccggcgtgcgtcacgaacccccccacggccgggtgcgccagga 1
>gb|CA657291.1|CA657291 wlm0.pk0034.h1 wlm0 Triticum aestivum cDNA clone wlm0.pk0034.h1 5'
end, mRNA sequence
Length = 433
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 717 gtacagaacggagcgcggcgggcgcgcgtccagccac 753
|||||| || |||||||||||| ||||||||||||||
Sbjct: 86 gtacaggaccgagcgcggcgggtgcgcgtccagccac 50
>gb|CD876252.1|CD876252 AZO3.109B21R011126 AZO3 Triticum aestivum cDNA clone AZO3109B21,
mRNA sequence
Length = 700
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 717 gtacagaacggagcgcggcgggcgcgcgtccagccac 753
|||||| || |||||||||||| ||||||||||||||
Sbjct: 517 gtacaggaccgagcgcggcgggtgcgcgtccagccac 553
>gb|BQ483250.1|BQ483250 WHE3506_D01_G02ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3506_D01_G02, mRNA sequence
Length = 625
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 438 ctccaccatggatttccacccgcagtgcgtccagaacccacccaccgc 485
||||| || ||| |||||||||||||||||| ||| |||||||||||
Sbjct: 263 ctccagcacggagttccacccgcagtgcgtcaggaatccacccaccgc 216
>gb|AL824749.1|AL824749 AL824749 p:234 Triticum aestivum cDNA clone G05_p234_plate_1, mRNA
sequence
Length = 441
Score = 48.1 bits (24), Expect = 0.001
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacct 502
|||||||||||||||||| ||| | |||||||||||||||| ||| ||||
Sbjct: 235 ttccacccgcagtgcgtcacgaagcaccccaccgccgggtgcgacagcacct 184
>gb|CA711259.1|CA711259 wdk2c.pk018.m3 wdk2c Triticum aestivum cDNA clone wdk2c.pk018.m3 5'
end, mRNA sequence
Length = 366
Score = 48.1 bits (24), Expect = 0.001
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacct 502
|||||||||||||||||| ||| | |||||||||||||||| ||| ||||
Sbjct: 153 ttccacccgcagtgcgtcacgaagcaccccaccgccgggtgcgacagcacct 102
>gb|CD895871.1|CD895871 G174.101C21F010821 G174 Triticum aestivum cDNA clone G174101C21,
mRNA sequence
Length = 619
Score = 48.1 bits (24), Expect = 0.001
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||| ||||||||| |||| | || |||||||||||| |||| | | || |||||
Sbjct: 252 ttccacccacagtgcgtcacgaacgcgccaaccgccgggtgccccagtatcgccgtctgc 193
Query: 511 ggtgcccacgcc 522
|| |||||||||
Sbjct: 192 ggggcccacgcc 181
>gb|BQ837969.1|BQ837969 WHE2905_A11_A21ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2905_A11_A21, mRNA
sequence
Length = 798
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgc 485
||||| |||| ||||||||||||||| ||||||||
Sbjct: 497 ttccagccgctgtgcgtccagaacccgcccaccgc 463
>gb|CD926341.1|CD926341 G750.121L03F010711 G750 Triticum aestivum cDNA clone G750121L03,
mRNA sequence
Length = 473
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 438 ctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgc 492
||||| || ||| |||||||||||||||||| ||| | ||||||||||| ||||
Sbjct: 127 ctccatcacggagttccacccgcagtgcgtcacgaagcaacccaccgccgcgtgc 73
>gb|BF474053.1|BF474053 WHE0840_E04_J08ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0840_E04_J08, mRNA sequence
Length = 450
Score = 44.1 bits (22), Expect = 0.014
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 436 gcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgcgcc 495
||||||||| | || ||||| |||| |||||| |||| | ||||||||||||||||||
Sbjct: 65 gcctccaccgtcgagttccagccgctgtgcgtgaagaaggcgcccaccgccgggtgcgcc 6
Query: 496 ag 497
||
Sbjct: 5 ag 4
>gb|BJ275225.1|BJ275225 BJ275225 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh6j21 3', mRNA sequence
Length = 665
Score = 44.1 bits (22), Expect = 0.014
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
||||| |||||||||||| ||||| || ||||| ||||||||| || |||| ||||
Sbjct: 465 ttccatccgcagtgcgtcacaaacccgccgaccgcgccgtgcgccagcacgtcccgctgc 524
Query: 511 ggtgcccacg 520
||||||||||
Sbjct: 525 ggtgcccacg 534
>gb|CA604775.1|CA604775 wr1.pk0039.h4 wr1 Triticum aestivum cDNA clone wr1.pk0039.h4 5'
end, mRNA sequence
Length = 566
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaaccc 476
|||||||||| |||||||||||||||
Sbjct: 175 ttccacccgccgtgcgtccagaaccc 150
>gb|BE428405.1|BE428405 MTD006.F09F990616 ITEC MTD Durum Wheat Root Library Triticum
turgidum subsp. durum cDNA clone MTD006.F09, mRNA
sequence
Length = 397
Score = 42.1 bits (21), Expect = 0.057
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacc 479
||||| |||||||||||| ||||||||||
Sbjct: 162 ttccaaccgcagtgcgtcaagaacccacc 134
>gb|BG314280.1|BG314280 WHE2461_E03_J05ZS Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2461_E03_J05,
mRNA sequence
Length = 599
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 401 acggctgcacgagcatgggca 421
|||||||||||||||||||||
Sbjct: 529 acggctgcacgagcatgggca 509
>gb|BJ295748.1|BJ295748 BJ295748 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl5e11 3', mRNA sequence
Length = 729
Score = 42.1 bits (21), Expect = 0.057
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 436 gcctccaccatggatttccacccgcagtgcgtc 468
||||||| | |||| ||||||||||||||||||
Sbjct: 608 gcctccagcgtggagttccacccgcagtgcgtc 640
>gb|BE445412.1|BE445412 WHE1136_C06_F12ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1136_C06_F12,
mRNA sequence
Length = 531
Score = 40.1 bits (20), Expect = 0.22
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 484 gccgggtgcgccaggacctccctctgcggtgcccac 519
|||||||||||||||| |||| |||||| ||||||
Sbjct: 49 gccgggtgcgccaggatctccagctgcggcgcccac 14
>gb|BM137436.1|BM137436 WHE0475_B01_C01ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE0475_B01_C01,
mRNA sequence
Length = 522
Score = 40.1 bits (20), Expect = 0.22
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 437 cctccaccatggatttccacccgcagtgcgtc 468
|||||| || ||| ||||||||||||||||||
Sbjct: 474 cctccagcacggagttccacccgcagtgcgtc 443
>gb|BQ838262.1|BQ838262 WHE2908_D04_H08ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2908_D04_H08, mRNA
sequence
Length = 697
Score = 40.1 bits (20), Expect = 0.22
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 484 gccgggtgcgccaggacctccctctgcggtgcccac 519
|||||||||||||||| |||| |||||| ||||||
Sbjct: 581 gccgggtgcgccaggatctccagctgcggcgcccac 546
>gb|BU100256.1|BU100256 WHE3351_B05_C09ZS Chinese Spring aluminum-stressed root tip cDNA
library Triticum aestivum cDNA clone WHE3351_B05_C09,
mRNA sequence
Length = 546
Score = 40.1 bits (20), Expect = 0.22
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 484 gccgggtgcgccaggacctccctctgcggtgcccac 519
|||||||||||||||| |||| |||||| ||||||
Sbjct: 191 gccgggtgcgccaggatctccagctgcggcgcccac 156
>gb|CD452897.1|CD452897 WHE1136_C06_F12ZT CS wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1136_C06_F12,
mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.22
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 484 gccgggtgcgccaggacctccctctgcggtgcccac 519
|||||||||||||||| |||| |||||| ||||||
Sbjct: 482 gccgggtgcgccaggatctccagctgcggcgcccac 517
>gb|CD885680.1|CD885680 G118.100B15R010921 G118 Triticum aestivum cDNA clone G118100B15,
mRNA sequence
Length = 597
Score = 40.1 bits (20), Expect = 0.22
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||||||| |||| | || || ||||||||| |||| | || |||||
Sbjct: 509 ttccacccgcagtgcgtcacgaacgcgccgacggccgggtgccccagtatggccgtctgc 568
Query: 511 ggtgcccacgcc 522
|| |||||||||
Sbjct: 569 ggggcccacgcc 580
>gb|CD935556.1|CD935556 OV.101N04R010424 OV Triticum aestivum cDNA clone OV101N04, mRNA
sequence
Length = 714
Score = 40.1 bits (20), Expect = 0.22
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 714 gacgtacagaacggagcgcggcgggcgcgcgtccagccac 753
|||||| || ||||||| |||||| ||||||||||||||
Sbjct: 148 gacgtagagcacggagcccggcggctgcgcgtccagccac 187
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 228,874
Number of Sequences: 636343
Number of extensions: 228874
Number of successful extensions: 67711
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 67646
Number of HSP's gapped (non-prelim): 64
length of query: 785
length of database: 367,240,239
effective HSP length: 19
effective length of query: 766
effective length of database: 355,149,722
effective search space: 272044687052
effective search space used: 272044687052
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)