BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448753.2.1
(537 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA620672.1|CA620672 wl1n.pk0058.h8 wl1n Triticum aestivu... 262 2e-068
gb|BQ244576.1|BQ244576 TaE15040G02R TaE15 Triticum aestivum... 86 3e-015
gb|BQ295323.1|BQ295323 WHE2868_F10_K20ZS Wheat unstressed r... 86 3e-015
gb|BQ800910.1|BQ800910 WHE2804_B03_D06ZS Triticum monococcu... 86 3e-015
gb|CD890301.1|CD890301 G118.114F06F010718 G118 Triticum aes... 86 3e-015
gb|CD900557.1|CD900557 G356.001P10F010705 G356 Triticum aes... 78 7e-013
gb|BF485118.1|BF485118 WHE1793_F06_L11ZS Wheat pre-anthesis... 74 1e-011
gb|BJ223377.1|BJ223377 BJ223377 Y. Ogihara unpublished cDNA... 62 4e-008
gb|BE637648.1|BE637648 WHE0983-0986_E13_E13ZS Wheat pre-ant... 46 0.002
gb|DR735918.1|DR735918 FGAS081458 Triticum aestivum FGAS: L... 46 0.002
gb|DR737651.1|DR737651 FGAS082869 Triticum aestivum FGAS: L... 44 0.010
gb|CK166772.1|CK166772 FGAS050986 Triticum aestivum FGAS: T... 40 0.15
>gb|CA620672.1|CA620672 wl1n.pk0058.h8 wl1n Triticum aestivum cDNA clone wl1n.pk0058.h8 5'
end, mRNA sequence
Length = 440
Score = 262 bits (132), Expect = 2e-068
Identities = 249/289 (86%), Gaps = 5/289 (1%)
Strand = Plus / Plus
Query: 98 agttcaaatatgtctgtctaccaagcaatcagatgcatgtcatcatccaagctttttgtt 157
||||||||| |||||||| ||||||||||||||| |||||||| |||| || ||||||
Sbjct: 102 agttcaaatctgtctgtcnaccaagcaatcagattcatgtcat---ccaanctctttgtt 158
Query: 158 ggagggctttcttatggaaccgatgatcacagtctcagagacgagtttgccaaatatgga 217
|||||| |||||||| ||| || ||||||| ||||| ||||| ||||||||||||||
Sbjct: 159 ggagggatttcttatcaaactgangatcacantctcanggacgantttgccaaatatggg 218
Query: 218 caagttattgaagctaagattatccttgatcgtgagtctgggaggtccagaggttttggc 277
||||| ||||||| || ||||||| |||| ||||| ||||||| ||| |||||||| |
Sbjct: 219 caagtcattgaagntangattatcattgaccgtgaatctgggangtctagaggtttgngn 278
Query: 278 tttataacttacacgtcttctgaggaggcttcggctgccatcactgccatggatggaaag 337
||| |||||||||| ||||||||||||||||| |||||||| |||||| ||||| |||||
Sbjct: 279 tttgtaacttacacntcttctgaggaggcttcagctgccattactgccttggatngaaag 338
Query: 338 actctggatggacggaacatacgggttaatcatgctaacgagaggacag 386
|| || ||||||||| ||||||| ||||||||||||||||||| |||||
Sbjct: 339 ac-ctcgatggacgg-acatacgtgttaatcatgctaacgagaagacag 385
>gb|BQ244576.1|BQ244576 TaE15040G02R TaE15 Triticum aestivum cDNA clone TaE15040G02R, mRNA
sequence
Length = 441
Score = 85.7 bits (43), Expect = 3e-015
Identities = 142/175 (81%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagggctttcttatg 173
||||||| || || ||||||||||||||||| |||||||| |||| ||||||||| | |
Sbjct: 191 tctaccaggcgataagatgcatgtcatcatcgaagcttttcgttgcagggctttccttta 250
Query: 174 gaaccgatgatcacagtctcagagacgagtttgccaaatatggacaagttattgaagcta 233
|| || || |||||| ||||| | ||| || | |||||| || ||||||| ||||
Sbjct: 251 acacagacgagggcagtctgagagatgccttttcccattatggagaaattattgatgcta 310
Query: 234 agattatccttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
|||||||| | || ||||| |||||||||| | |||||||||||||||||||||
Sbjct: 311 agattatcgtagaccgtgacactgggaggtctacaggttttggctttataactta 365
>gb|BQ295323.1|BQ295323 WHE2868_F10_K20ZS Wheat unstressed root tip cDNA library Triticum
aestivum cDNA clone WHE2868_F10_K20, mRNA sequence
Length = 717
Score = 85.7 bits (43), Expect = 3e-015
Identities = 136/167 (81%)
Strand = Plus / Plus
Query: 122 gcaatcagatgcatgtcatcatccaagctttttgttggagggctttcttatggaaccgat 181
||||| ||||||||||||||||| ||||| || |||||||||||||| | | || ||
Sbjct: 206 gcaataagatgcatgtcatcatcgaagctcttcgttggagggctttcctttaacacagac 265
Query: 182 gatcacagtctcagagacgagtttgccaaatatggacaagttattgaagctaagattatc 241
|| |||||| ||||| | ||| || | |||||| || ||||||| ||||||||||||
Sbjct: 266 gagggcagtctgagagatgccttttcccattatggagaaattattgatgctaagattatc 325
Query: 242 cttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
| ||||| || |||| ||||| |||||||||||||||||||||||
Sbjct: 326 gtagatcgcgacactggaaggtctagaggttttggctttataactta 372
>gb|BQ800910.1|BQ800910 WHE2804_B03_D06ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2804_B03_D06, mRNA
sequence
Length = 604
Score = 85.7 bits (43), Expect = 3e-015
Identities = 142/175 (81%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagggctttcttatg 173
||||||| || || |||||||||||||| || ||||| || |||||||||||||| | |
Sbjct: 171 tctaccaggcgataagatgcatgtcatcctcgaagctcttcgttggagggctttccttta 230
Query: 174 gaaccgatgatcacagtctcagagacgagtttgccaaatatggacaagttattgaagcta 233
|| || || |||||| ||||| | ||| || | |||||| || ||||||| ||||
Sbjct: 231 acacagacgagggcagtctgagagatgccttttcccattatggagaaattattgatgcta 290
Query: 234 agattatccttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
|||||||| | ||||| || |||||||||| |||||||||||||||||||||||
Sbjct: 291 agattatcgtagatcgcgacactgggaggtctagaggttttggctttataactta 345
>gb|CD890301.1|CD890301 G118.114F06F010718 G118 Triticum aestivum cDNA clone G118114F06,
mRNA sequence
Length = 585
Score = 85.7 bits (43), Expect = 3e-015
Identities = 136/167 (81%)
Strand = Plus / Plus
Query: 122 gcaatcagatgcatgtcatcatccaagctttttgttggagggctttcttatggaaccgat 181
||||| ||||||||||||||||| ||||| || |||||||||||||| | | || ||
Sbjct: 213 gcaataagatgcatgtcatcatcgaagctcttcgttggagggctttcctttaacacagac 272
Query: 182 gatcacagtctcagagacgagtttgccaaatatggacaagttattgaagctaagattatc 241
|| |||||| ||||| | ||| || | |||||| || ||||||| ||||||||||||
Sbjct: 273 gagggcagtctgagagatgccttttcccattatggagaaattattgatgctaagattatc 332
Query: 242 cttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
| ||||| || |||| ||||| |||||||||||||||||||||||
Sbjct: 333 gtagatcgcgacactggaaggtctagaggttttggctttataactta 379
>gb|CD900557.1|CD900557 G356.001P10F010705 G356 Triticum aestivum cDNA clone G356001P10,
mRNA sequence
Length = 553
Score = 77.8 bits (39), Expect = 7e-013
Identities = 141/175 (80%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagggctttcttatg 173
||||||| || || ||||||||||||||||| |||||||| |||||||||||||| | |
Sbjct: 192 tctaccaggcgataagatgcatgtcatcatcgaagcttttcgttggagggctttccttta 251
Query: 174 gaaccgatgatcacagtctcagagacgagtttgccaaatatggacaagttattgaagcta 233
|| || || |||||| ||||| | ||| || | |||||| || |||| || ||||
Sbjct: 252 acacagacgagggcagtctgagagatgccttttcccattatggagaaattatggatgcta 311
Query: 234 agattatccttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
|||||||| | || || || |||||||||| |||||||| ||||||||||||||
Sbjct: 312 agattatcgtagaccgcgacactgggaggtctagaggtttgggctttataactta 366
>gb|BF485118.1|BF485118 WHE1793_F06_L11ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1793_F06_L11, mRNA sequence
Length = 497
Score = 73.8 bits (37), Expect = 1e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 212 tatggacaagttattgaagctaagattatccttgatcgtgagtctgggaggtccagaggt 271
|||||| || ||||||| |||||||||||| | || || || |||||||||| ||||||
Sbjct: 273 tatggagaaattattgatgctaagattatcgtagaccgcgacactgggaggtctagaggt 332
Query: 272 tttggctttataactta 288
|||||||||||||||||
Sbjct: 333 tttggctttataactta 349
>gb|BJ223377.1|BJ223377 BJ223377 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl4h13 5', mRNA sequence
Length = 396
Score = 61.9 bits (31), Expect = 4e-008
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 222 ttattgaagctaagattatccttgatcgtgagtctgggaggtccagaggttttggcttta 281
||||||| |||||||||||| | || || || |||| ||||| ||||||||||||||||
Sbjct: 275 ttattgatgctaagattatcgtagaccgcgacactggcaggtctagaggttttggcttta 334
Query: 282 taactta 288
|||||||
Sbjct: 335 taactta 341
Score = 42.1 bits (21), Expect = 0.038
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 128 agatgcatgtcatcatccaagctttttgttggagggctttc 168
|||||||||||||| || ||||| || || |||||||||||
Sbjct: 181 agatgcatgtcatcctcgaagctcttcgtaggagggctttc 221
>gb|BE637648.1|BE637648 WHE0983-0986_E13_E13ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE0983-0986_E13_E13, mRNA
sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 222 ttattgaagctaagattatccttgatcgtgagtctgggaggtccagaggttttggcttta 281
||||||| |||||||||||| | | || || |||| ||||| | ||||||||||||||
Sbjct: 271 ttattgatgctaagattatcgtaaaccgcgacactggcaggtctaaaggttttggcttta 330
Query: 282 taactta 288
|||||||
Sbjct: 331 taactta 337
>gb|DR735918.1|DR735918 FGAS081458 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1074
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 222 ttattgaagctaagattatccttgatcgtgagtctgggaggtccagaggttttggcttta 281
||||||| |||||||||||| | || |||| |||||||| ||||||| ||||||||
Sbjct: 732 ttattgatgctaagattatcgtagacagtgacattgggaggtatagaggttctggcttta 673
Query: 282 taactta 288
|||||||
Sbjct: 672 taactta 666
>gb|DR737651.1|DR737651 FGAS082869 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1060
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 255 ctgggaggtccagaggttttggctttataactta 288
||||||||| | |||||||||||||||||||||
Sbjct: 418 ctgggaggttaaaaggttttggctttataactta 451
>gb|CK166772.1|CK166772 FGAS050986 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
mRNA sequence
Length = 1149
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 92 tcaaagagttcaaatatgtc 111
||||||||||||||||||||
Sbjct: 996 tcaaagagttcaaatatgtc 977
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,650
Number of Sequences: 636343
Number of extensions: 72650
Number of successful extensions: 20311
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20273
Number of HSP's gapped (non-prelim): 33
length of query: 537
length of database: 367,240,239
effective HSP length: 19
effective length of query: 518
effective length of database: 355,149,722
effective search space: 183967555996
effective search space used: 183967555996
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)