BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441100.2.1
(646 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ263797.1|BJ263797 BJ263797 Y. Ogihara unpublished cDNA... 46 0.003
gb|BJ263800.1|BJ263800 BJ263800 Y. Ogihara unpublished cDNA... 46 0.003
gb|AL819342.1|AL819342 AL819342 n:129 Triticum aestivum cDN... 46 0.003
gb|CD373870.1|CD373870 WHE2608_F05_L10ZT Sumai3 Wheat Fusar... 46 0.003
gb|CK163158.1|CK163158 FGAS015776 Triticum aestivum FGAS: L... 46 0.003
gb|CK205445.1|CK205445 FGAS016931 Triticum aestivum FGAS: L... 46 0.003
gb|CN010939.1|CN010939 WHE3878_A03_B06ZS Wheat Fusarium gra... 46 0.003
gb|BE405383.1|BE405383 WHE1213_G01_M01ZS Wheat etiolated se... 42 0.047
gb|BJ225322.1|BJ225322 BJ225322 Y. Ogihara unpublished cDNA... 42 0.047
gb|BJ230132.1|BJ230132 BJ230132 Y. Ogihara unpublished cDNA... 42 0.047
gb|BJ234201.1|BJ234201 BJ234201 Y. Ogihara unpublished cDNA... 42 0.047
gb|BJ240059.1|BJ240059 BJ240059 Y. Ogihara unpublished cDNA... 42 0.047
gb|BJ306878.1|BJ306878 BJ306878 Y. Ogihara unpublished cDNA... 42 0.047
gb|CD886828.1|CD886828 G118.103G17F010605 G118 Triticum aes... 42 0.047
gb|CD903043.1|CD903043 G356.108O24F010919 G356 Triticum aes... 42 0.047
gb|DR740128.1|DR740128 FGAS085056 Triticum aestivum FGAS: L... 42 0.047
gb|BJ265019.1|BJ265019 BJ265019 Y. Ogihara unpublished cDNA... 40 0.18
gb|CA653002.1|CA653002 wre1n.pk172.c7 wre1n Triticum aestiv... 40 0.18
gb|CA712279.1|CA712279 wdk3c.pk005.g4 wdk3c Triticum aestiv... 40 0.18
gb|CD886829.1|CD886829 G118.103G17R010921 G118 Triticum aes... 40 0.18
gb|CD914666.1|CD914666 G550.123J10R010920 G550 Triticum aes... 40 0.18
gb|CD938338.1|CD938338 OV.109M02R010406 OV Triticum aestivu... 40 0.18
gb|CK199059.1|CK199059 FGAS007550 Triticum aestivum FGAS: L... 40 0.18
>gb|BJ263797.1|BJ263797 BJ263797 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh6e17 3', mRNA sequence
Length = 649
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 9 gtagaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtaga 68
|||||||| ||||||||||| || ||||| | |||||||| || || || | || |||
Sbjct: 519 gtagaagcgtgcaagaaggcgaccggagcgaccatcaaggttgactacctcgaccggaga 460
Query: 69 cccggagattatgccgaggtatacagc 95
||||| ||||| ||||| |||||||||
Sbjct: 459 cccggggattacgccgaagtatacagc 433
>gb|BJ263800.1|BJ263800 BJ263800 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh6f02 3', mRNA sequence
Length = 569
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 9 gtagaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtaga 68
|||||||| ||||||||||| || ||||| | |||||||| || || || | || |||
Sbjct: 528 gtagaagcgtgcaagaaggcgaccggagcgaccatcaaggttgactacctcgaccggaga 469
Query: 69 cccggagattatgccgaggtatacagc 95
||||| ||||| ||||| |||||||||
Sbjct: 468 cccggggattacgccgaagtatacagc 442
>gb|AL819342.1|AL819342 AL819342 n:129 Triticum aestivum cDNA clone A04_n129_plate_19, mRNA
sequence
Length = 568
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 9 gtagaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtaga 68
|||||||| ||||||||||| || ||||| | |||||||| || || || | || |||
Sbjct: 178 gtagaagcgtgcaagaaggcgaccggagcgaccatcaaggttgactacctcgaccggaga 237
Query: 69 cccggagattatgccgaggtatacagc 95
||||| ||||| ||||| |||||||||
Sbjct: 238 cccggggattacgccgaagtatacagc 264
>gb|CD373870.1|CD373870 WHE2608_F05_L10ZT Sumai3 Wheat Fusarium graminearum infected spike
cDNA library Triticum aestivum cDNA clone
WHE2608_F05_L10, mRNA sequence
Length = 707
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 9 gtagaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtaga 68
|||||||| ||||||||||| || ||||| | |||||||| || || || | || |||
Sbjct: 595 gtagaagcgtgcaagaaggcgaccggagcgaccatcaaggttgactacctcgaccggaga 536
Query: 69 cccggagattatgccgaggtatacagc 95
||||| ||||| ||||| |||||||||
Sbjct: 535 cccggggattacgccgaagtatacagc 509
>gb|CK163158.1|CK163158 FGAS015776 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1073
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 9 gtagaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtaga 68
|||||||| ||||||||||| || ||||| | |||||||| || || || | || |||
Sbjct: 524 gtagaagcgtgcaagaaggcgaccggagcgaccatcaaggttgactacctcgaccggaga 583
Query: 69 cccggagattatgccgaggtatacagc 95
||||| ||||| ||||| |||||||||
Sbjct: 584 cccggggattacgccgaagtatacagc 610
>gb|CK205445.1|CK205445 FGAS016931 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1077
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 9 gtagaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtaga 68
|||||||| ||||||||||| || ||||| | |||||||| || || || | || |||
Sbjct: 586 gtagaagcgtgcaagaaggcgaccggagcgaccatcaaggttgactacctcgaccggaga 527
Query: 69 cccggagattatgccgaggtatacagc 95
||||| ||||| ||||| |||||||||
Sbjct: 526 cccggggattacgccgaagtatacagc 500
>gb|CN010939.1|CN010939 WHE3878_A03_B06ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3878_A03_B06,
mRNA sequence
Length = 676
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 9 gtagaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtaga 68
|||||||| ||||||||||| || ||||| | |||||||| || || || | || |||
Sbjct: 169 gtagaagcgtgcaagaaggcgaccggagcgaccatcaaggttgactacctcgaccggaga 228
Query: 69 cccggagattatgccgaggtatacagc 95
||||| ||||| ||||| |||||||||
Sbjct: 229 cccggggattacgccgaagtatacagc 255
>gb|BE405383.1|BE405383 WHE1213_G01_M01ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE1213_G01_M01, mRNA
sequence
Length = 572
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 gtagaagcttgcaagaaggcaacaggagc 37
|||||||| |||||||||||||| |||||
Sbjct: 536 gtagaagcgtgcaagaaggcaaccggagc 564
>gb|BJ225322.1|BJ225322 BJ225322 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl21i11 5', mRNA sequence
Length = 625
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 gtagaagcttgcaagaaggcaacaggagc 37
|||||||| |||||||||||||| |||||
Sbjct: 242 gtagaagcgtgcaagaaggcaaccggagc 270
>gb|BJ230132.1|BJ230132 BJ230132 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl21i11 3', mRNA sequence
Length = 704
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 9 gtagaagcttgcaagaaggcaacaggagc 37
|||||||| |||||||||||||| |||||
Sbjct: 634 gtagaagcgtgcaagaaggcaaccggagc 606
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccg 194
|||||||||||||| |||||||||
Sbjct: 472 tggaaatggcagaaggcgcacccg 449
>gb|BJ234201.1|BJ234201 BJ234201 Y. Ogihara unpublished cDNA library, Wh_e Triticum
aestivum cDNA clone whe9b07 5', mRNA sequence
Length = 648
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 gtagaagcttgcaagaaggcaacaggagc 37
|||||||| |||||||||||||| |||||
Sbjct: 397 gtagaagcgtgcaagaaggcaaccggagc 425
>gb|BJ240059.1|BJ240059 BJ240059 Y. Ogihara unpublished cDNA library, Wh_e Triticum
aestivum cDNA clone whe9b07 3', mRNA sequence
Length = 608
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 9 gtagaagcttgcaagaaggcaacaggagc 37
|||||||| |||||||||||||| |||||
Sbjct: 563 gtagaagcgtgcaagaaggcaaccggagc 535
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccg 194
|||||||||||||| |||||||||
Sbjct: 401 tggaaatggcagaaggcgcacccg 378
>gb|BJ306878.1|BJ306878 BJ306878 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd5n11 3', mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 9 gtagaagcttgcaagaaggcaacaggagc 37
|||||||| |||||||||||||| |||||
Sbjct: 567 gtagaagcgtgcaagaaggcaaccggagc 539
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccg 194
|||||||||||||| |||||||||
Sbjct: 405 tggaaatggcagaaggcgcacccg 382
>gb|CD886828.1|CD886828 G118.103G17F010605 G118 Triticum aestivum cDNA clone G118103G17,
mRNA sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 gtagaagcttgcaagaaggcaacaggagc 37
|||||||| |||||||||||||| |||||
Sbjct: 466 gtagaagcgtgcaagaaggcaaccggagc 494
>gb|CD903043.1|CD903043 G356.108O24F010919 G356 Triticum aestivum cDNA clone G356108O24,
mRNA sequence
Length = 732
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 gtagaagcttgcaagaaggcaacaggagc 37
|||||||| |||||||||||||| |||||
Sbjct: 389 gtagaagcgtgcaagaaggcaaccggagc 417
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccg 194
|||||||||||||| |||||||||
Sbjct: 551 tggaaatggcagaaggcgcacccg 574
>gb|DR740128.1|DR740128 FGAS085056 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1114
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 gtagaagcttgcaagaaggcaacaggagc 37
|||||||| |||||||||||||| |||||
Sbjct: 405 gtagaagcgtgcaagaaggcaaccggagc 433
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccg 194
|||||||||||||| |||||||||
Sbjct: 567 tggaaatggcagaaggcgcacccg 590
>gb|BJ265019.1|BJ265019 BJ265019 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh11d20 3', mRNA sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccg 194
|||||||||||||| |||||||||
Sbjct: 308 tggaaatggcagaaggcgcacccg 285
>gb|CA653002.1|CA653002 wre1n.pk172.c7 wre1n Triticum aestivum cDNA clone wre1n.pk172.c7 5'
end, mRNA sequence
Length = 559
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccg 194
|||||||||||||| |||||||||
Sbjct: 412 tggaaatggcagaaggcgcacccg 389
>gb|CA712279.1|CA712279 wdk3c.pk005.g4 wdk3c Triticum aestivum cDNA clone wdk3c.pk005.g4 5'
end, mRNA sequence
Length = 555
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccg 194
|||||||||||||| |||||||||
Sbjct: 437 tggaaatggcagaaggcgcacccg 414
>gb|CD886829.1|CD886829 G118.103G17R010921 G118 Triticum aestivum cDNA clone G118103G17,
mRNA sequence
Length = 487
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccg 194
|||||||||||||| |||||||||
Sbjct: 459 tggaaatggcagaaggcgcacccg 436
>gb|CD914666.1|CD914666 G550.123J10R010920 G550 Triticum aestivum cDNA clone G550123J10,
mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccg 194
|||||||||||||| |||||||||
Sbjct: 415 tggaaatggcagaaggcgcacccg 392
>gb|CD938338.1|CD938338 OV.109M02R010406 OV Triticum aestivum cDNA clone OV109M02, mRNA
sequence
Length = 556
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccg 194
|||||||||||||| |||||||||
Sbjct: 414 tggaaatggcagaaggcgcacccg 391
>gb|CK199059.1|CK199059 FGAS007550 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 852
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccg 194
|||||||||||||| |||||||||
Sbjct: 484 tggaaatggcagaaggcgcacccg 461
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91,679
Number of Sequences: 636343
Number of extensions: 91679
Number of successful extensions: 23618
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23517
Number of HSP's gapped (non-prelim): 101
length of query: 646
length of database: 367,240,239
effective HSP length: 19
effective length of query: 627
effective length of database: 355,149,722
effective search space: 222678875694
effective search space used: 222678875694
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)