BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440958.2.1
(791 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE406468.1|BE406468 WHE0416_g08_n16zB Wheat etiolated se... 119 3e-025
gb|CD866826.1|CD866826 AZO2.104I16R010327 AZO2 Triticum aes... 119 3e-025
gb|BE404218.1|BE404218 WHE1203_F02_L03ZS Wheat etiolated se... 78 1e-012
gb|AL826125.1|AL826125 AL826125 p:436 Triticum aestivum cDN... 78 1e-012
gb|BQ161211.1|BQ161211 WHE0366_H10_P20ZT Wheat cold-stresse... 64 2e-008
gb|CK193296.1|CK193296 FGAS001710 Triticum aestivum FGAS: L... 56 4e-006
gb|U76384.1|TAU76384 Triticum aestivum o-methyltransferase ... 56 4e-006
gb|BJ284394.1|BJ284394 BJ284394 Y. Ogihara unpublished cDNA... 54 2e-005
gb|CA734489.1|CA734489 wpi1s.pk001.e17 wpi1s Triticum aesti... 54 2e-005
gb|BE414761.1|BE414761 MWL002.C06F990504 ITEC MWL Wheat Roo... 52 6e-005
gb|BE430047.1|BE430047 TAS006.E04R990622 ITEC TAS Wheat cDN... 52 6e-005
gb|BE517070.1|BE517070 WHE623_B09_D17ZA Wheat ABA-treated e... 52 6e-005
gb|BM137250.1|BM137250 WHE2631_D12_H23ZS Wheat Fusarium gra... 52 6e-005
gb|BQ744370.1|BQ744370 WHE4114_G10_M20ZS Wheat salt-stresse... 52 6e-005
gb|BJ319379.1|BJ319379 BJ319379 Y. Ogihara unpublished cDNA... 52 6e-005
gb|CA650026.1|CA650026 wre1n.pk0148.b1 wre1n Triticum aesti... 52 6e-005
gb|AJ611580.1|AJ611580 AJ611580 Triticum turgidum subsp. du... 52 6e-005
gb|BQ162433.1|BQ162433 WHE0416_g08_n16zT Wheat etiolated se... 50 2e-004
gb|BM138318.1|BM138318 WHE0491_B11_C21ZS Wheat Fusarium gra... 46 0.004
gb|CA642361.1|CA642361 wre1n.pk0054.d1 wre1n Triticum aesti... 46 0.004
gb|BU100113.1|BU100113 WHE3315_C12_F23ZS Chinese Spring whe... 44 0.014
gb|CA691512.1|CA691512 wlm96.pk053.j18 wlm96 Triticum aesti... 44 0.014
gb|CK162825.1|CK162825 FGAS015425 Triticum aestivum FGAS: L... 44 0.014
gb|CK206856.1|CK206856 FGAS018467 Triticum aestivum FGAS: L... 44 0.014
gb|CV769800.1|CV769800 FGAS064192 Triticum aestivum FGAS: L... 44 0.014
gb|CA622402.1|CA622402 wl1n.pk0091.h2 wl1n Triticum aestivu... 42 0.057
gb|CK204735.1|CK204735 FGAS013271 Triticum aestivum FGAS: L... 42 0.057
gb|CK205087.1|CK205087 FGAS013624 Triticum aestivum FGAS: L... 42 0.057
gb|BJ229068.1|BJ229068 BJ229068 Y. Ogihara unpublished cDNA... 40 0.23
gb|BJ295598.1|BJ295598 BJ295598 Y. Ogihara unpublished cDNA... 40 0.23
gb|AL821746.1|AL821746 AL821746 N:130 Triticum aestivum cDN... 40 0.23
gb|BQ801256.1|BQ801256 WHE2812_B08_D16ZS Triticum monococcu... 40 0.23
gb|CA611655.1|CA611655 wr1.pk0128.c8 wr1 Triticum aestivum ... 40 0.23
gb|CA720498.1|CA720498 wkm2n.pk007.k14 wkm2n Triticum aesti... 40 0.23
gb|CD903630.1|CD903630 G356.110O04R011024 G356 Triticum aes... 40 0.23
gb|CD903647.1|CD903647 G356.110P03F010919 G356 Triticum aes... 40 0.23
gb|CD934893.1|CD934893 OV.002E03R010412 OV Triticum aestivu... 40 0.23
gb|CD939689.1|CD939689 OV.114J05F010312 OV Triticum aestivu... 40 0.23
>gb|BE406468.1|BE406468 WHE0416_g08_n16zB Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0416_g08_n16, mRNA
sequence
Length = 363
Score = 119 bits (60), Expect = 3e-025
Identities = 111/128 (86%)
Strand = Plus / Plus
Query: 174 accgccgtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtc 233
|||| ||||||||| |||| ||| |||||||||||||||||| || ||||||||||||||
Sbjct: 106 accgacgtgaagtacgtcgtcggcgacatgttcgagagcgttccgccggcagacgctgtc 165
Query: 234 ttcctcaagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaagaac 293
|| ||||||| | | ||||||||||||| | | ||||||||||||||||| ||||||
Sbjct: 166 tttctcaagtgggtactacatgactggggacacgaggactgtgtcaagatactaaagaac 225
Query: 294 tgcaagaa 301
||||||||
Sbjct: 226 tgcaagaa 233
>gb|CD866826.1|CD866826 AZO2.104I16R010327 AZO2 Triticum aestivum cDNA clone AZO2104I16,
mRNA sequence
Length = 675
Score = 119 bits (60), Expect = 3e-025
Identities = 111/128 (86%)
Strand = Plus / Minus
Query: 174 accgccgtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtc 233
|||| |||||| || |||| ||| |||||||||||||||||| || ||||||||||||||
Sbjct: 620 accgacgtgaactacgtcgtcggcgacatgttcgagagcgttccgccggcagacgctgtc 561
Query: 234 ttcctcaagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaagaac 293
|| ||||||| | | ||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 560 tttctcaagtgggtactacatgactggggacacgaggactgtgtcaagatactgaagaac 501
Query: 294 tgcaagaa 301
||||||||
Sbjct: 500 tgcaagaa 493
Score = 48.1 bits (24), Expect = 0.001
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 400 tgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaaga 459
|||||||||||||||| |||| | || | || | ||||||||||||| ||||||| | |
Sbjct: 394 tgtttgatctctacatgatgattgtcgatggcattgagcgagatgagcaagagtgggaaa 335
Query: 460 agatcatctttgaagccgggttta 483
||||| || | ||||| |||||||
Sbjct: 334 agatcttcctcgaagctgggttta 311
>gb|BE404218.1|BE404218 WHE1203_F02_L03ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE1203_F02_L03, mRNA
sequence
Length = 628
Score = 77.8 bits (39), Expect = 1e-012
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 183 aagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||| |||||||| ||||||||||||||||| | |||||||||| ||||||||||||
Sbjct: 263 aagtacgtcgccggcgacatgttcgagagcgtgccaccggcagacgccgtcttcctcaag 322
Query: 243 tcgattatacatgactggg 261
||| || | ||||||||||
Sbjct: 323 tcggttcttcatgactggg 341
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 405 gatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatc 464
||||||||||| ||| |||||| || || ||||||||||||| |||||||| ||||||
Sbjct: 476 gatctctacataatgtttatcaatggcgttgagcgagatgagcaagagtggagcaagatc 535
Query: 465 atctttgaagccgggttta 483
|| | ||||| |||||||
Sbjct: 536 ttcctagaagctgggttta 554
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 108 gcgttcccgcacctggagtgcagcgtgct 136
|||||||||||| ||||||||||||||||
Sbjct: 188 gcgttcccgcacgtggagtgcagcgtgct 216
>gb|AL826125.1|AL826125 AL826125 p:436 Triticum aestivum cDNA clone G05_p436_plate_3, mRNA
sequence
Length = 501
Score = 77.8 bits (39), Expect = 1e-012
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 183 aagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||| || ||||| |||||||||||||||||| | |||||||||| ||||||||||||
Sbjct: 175 aagtacgttgccggcgacatgttcgagagcgttccaccggcagacgccgtcttcctcaag 234
Query: 243 tcgattatacatgactggg 261
||| || | ||||||||||
Sbjct: 235 tcggttcttcatgactggg 253
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 108 gcgttcccgcacctggagtgcagcgtgct 136
||||||||||||||| |||||||||||||
Sbjct: 100 gcgttcccgcacctgcagtgcagcgtgct 128
>gb|BQ161211.1|BQ161211 WHE0366_H10_P20ZT Wheat cold-stressed seedling cDNA library
Triticum aestivum cDNA clone WHE0366_H10_P20, mRNA
sequence
Length = 581
Score = 63.9 bits (32), Expect = 2e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 250 tacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaa 301
||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 570 tacatgactggggacacgaggactgtgtcaagatactgaagaactgcaagaa 519
Score = 48.1 bits (24), Expect = 0.001
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 400 tgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaaga 459
|||||||||||||||| |||| | || | || | ||||||||||||| ||||||| | |
Sbjct: 421 tgtttgatctctacatgatgattgtcgatggcattgagcgagatgagcaagagtgggaaa 362
Query: 460 agatcatctttgaagccgggttta 483
||||| || | ||||| |||||||
Sbjct: 361 agatcttcctcgaagctgggttta 338
>gb|CK193296.1|CK193296 FGAS001710 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 795
Score = 56.0 bits (28), Expect = 4e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 94 aggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcg 153
||||||||||| ||| ||||||||| | ||||||||||| || |||||||| ||||||
Sbjct: 172 aggccatcgcggcagctttcccgcacgttgagtgcagcgtcctggatctcccacacgtcg 231
Query: 154 tcgc 157
||||
Sbjct: 232 tcgc 235
>gb|U76384.1|TAU76384 Triticum aestivum o-methyltransferase mRNA, complete cds
Length = 1458
Score = 56.0 bits (28), Expect = 4e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 94 aggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcg 153
||||||||||| ||| ||||||||| | ||||||||||| || |||||||| ||||||
Sbjct: 713 aggccatcgcggcagctttcccgcacgttgagtgcagcgtcctggatctcccacacgtcg 772
Query: 154 tcgc 157
||||
Sbjct: 773 tcgc 776
>gb|BJ284394.1|BJ284394 BJ284394 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr2m04 3', mRNA sequence
Length = 375
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 405 gatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatc 464
||||||||||| ||| |||||| || || ||||||||||||| |||||||| ||||||
Sbjct: 211 gatctctacataatgtttatcaatggcgttgagcgagatgagcaagagtggagcaagatc 152
Query: 465 atctttgaagccgggttta 483
|| | ||||| |||||||
Sbjct: 151 ttcctagaagctgggttta 133
>gb|CA734489.1|CA734489 wpi1s.pk001.e17 wpi1s Triticum aestivum cDNA clone wpi1s.pk001.e17
5' end, mRNA sequence
Length = 531
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 423 atcaacggtgtcgagcgagatgagcgagagtggaagaagatcatctt 469
||||| || |||||||||||||||| |||||||||||||| |||||
Sbjct: 145 atcaatggcgtcgagcgagatgagcaggagtggaagaagataatctt 99
>gb|BE414761.1|BE414761 MWL002.C06F990504 ITEC MWL Wheat Root Library Triticum aestivum
cDNA clone MWL002.C06, mRNA sequence
Length = 410
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 102 gcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgtcgccg 159
|||| ||||||||||||||| |||||||||| || || ||||| ||||||||||||
Sbjct: 83 gcgagagcgttcccgcacctcaagtgcagcgttctggacctcccacacgtcgtcgccg 140
>gb|BE430047.1|BE430047 TAS006.E04R990622 ITEC TAS Wheat cDNA Library Triticum aestivum
cDNA clone TAS006.E04, mRNA sequence
Length = 403
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 102 gcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgtcgccg 159
|||| ||||||||||||||| |||||||||| || || ||||| ||||||||||||
Sbjct: 48 gcgagagcgttcccgcacctcaagtgcagcgttctggacctcccacacgtcgtcgccg 105
>gb|BE517070.1|BE517070 WHE623_B09_D17ZA Wheat ABA-treated embryo cDNA library Triticum
aestivum cDNA clone WHE623_B09_D17, mRNA sequence
Length = 510
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 102 gcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgtcgccg 159
|||| ||||||||||||||| |||||||||| || || ||||| ||||||||||||
Sbjct: 285 gcgagagcgttcccgcacctcaagtgcagcgttctggacctcccacacgtcgtcgccg 228
>gb|BM137250.1|BM137250 WHE2631_D12_H23ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2631_D12_H23,
mRNA sequence
Length = 547
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 102 gcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgtcgccg 159
|||| ||||||||||||||| |||||||||| || || ||||| ||||||||||||
Sbjct: 55 gcgagagcgttcccgcacctcaagtgcagcgttctggacctcccacacgtcgtcgccg 112
>gb|BQ744370.1|BQ744370 WHE4114_G10_M20ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4114_G10_M20, mRNA sequence
Length = 775
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 102 gcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgtcgccg 159
|||| ||||||||||||||| |||||||||| || || ||||| ||||||||||||
Sbjct: 715 gcgagagcgttcccgcacctcaagtgcagcgttctggacctcccacacgtcgtcgccg 772
>gb|BJ319379.1|BJ319379 BJ319379 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf8d06 3', mRNA sequence
Length = 728
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 102 gcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgtcgccg 159
|||| ||||||||||||||| |||||||||| || || ||||| ||||||||||||
Sbjct: 613 gcgagagcgttcccgcacctcaagtgcagcgttctggacctcccacacgtcgtcgccg 556
>gb|CA650026.1|CA650026 wre1n.pk0148.b1 wre1n Triticum aestivum cDNA clone wre1n.pk0148.b1
5' end, mRNA sequence
Length = 466
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 102 gcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgtcgccg 159
|||| ||||||||||||||| |||||||||| || || ||||| ||||||||||||
Sbjct: 18 gcgagagcgttcccgcacctcaagtgcagcgttctggacctcccacacgtcgtcgccg 75
>gb|AJ611580.1|AJ611580 AJ611580 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 04994R, mRNA
sequence
Length = 674
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 102 gcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgtcgccg 159
|||| ||||||||||||||| |||||||||| || || ||||| ||||||||||||
Sbjct: 378 gcgagagcgttcccgcacctcaagtgcagcgttctggacctcccacacgtcgtcgccg 435
>gb|BQ162433.1|BQ162433 WHE0416_g08_n16zT Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0416_g08_n16, mRNA
sequence
Length = 501
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 435 gagcgagatgagcgagagtggaagaagatcatctttgaagccgggttta 483
||||||||||||| ||||||||| |||||| || | ||||| |||||||
Sbjct: 393 gagcgagatgagcaagagtggaaaaagatcttcctcgaagctgggttta 345
>gb|BM138318.1|BM138318 WHE0491_B11_C21ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE0491_B11_C21,
mRNA sequence
Length = 561
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 95 ggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgt 154
||||||||| || || ||||||||| | |||||| |||||| || ||||| ||||||
Sbjct: 386 ggccatcgccaaggcattcccgcacataaagtgcaccgtgctggacctccctgtcgtcgt 445
Query: 155 cgccggcgctcctgc 169
|||||| ||||||||
Sbjct: 446 cgccggggctcctgc 460
>gb|CA642361.1|CA642361 wre1n.pk0054.d1 wre1n Triticum aestivum cDNA clone wre1n.pk0054.d1
5' end, mRNA sequence
Length = 376
Score = 46.1 bits (23), Expect = 0.004
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 405 gatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatc 464
||||| ||||||||| ||||| || || ||||||||||||| |||||||| ||||||
Sbjct: 5 gatctgtacatcatgttcatcaatggcgttgagcgagatgagcaagagtggagcaagatc 64
Query: 465 atctttgaagccgggttta 483
|| | ||||| |||||||
Sbjct: 65 ttcctggaagctgggttta 83
>gb|BU100113.1|BU100113 WHE3315_C12_F23ZS Chinese Spring wheat drought stressed root cDNA
library Triticum aestivum cDNA clone WHE3315_C12_F23,
mRNA sequence
Length = 695
Score = 44.1 bits (22), Expect = 0.014
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 108 gcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgtcgccggcgctcct 167
|||||||||||| | |||||||||| || || ||||| |||||||||||| ||||||
Sbjct: 147 gcgttcccgcacgtcaagtgcagcgtactggacctccctctcgtcgtcgccggggctcct 206
Query: 168 gc 169
||
Sbjct: 207 gc 208
>gb|CA691512.1|CA691512 wlm96.pk053.j18 wlm96 Triticum aestivum cDNA clone wlm96.pk053.j18
5' end, mRNA sequence
Length = 488
Score = 44.1 bits (22), Expect = 0.014
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 270 gactgtgtcaagatactgaagaactgcaag 299
|||||||||||| |||||||||| ||||||
Sbjct: 273 gactgtgtcaagctactgaagaattgcaag 302
>gb|CK162825.1|CK162825 FGAS015425 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1032
Score = 44.1 bits (22), Expect = 0.014
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 270 gactgtgtcaagatactgaagaactgcaag 299
|||||||||||| |||||||||| ||||||
Sbjct: 375 gactgtgtcaagctactgaagaattgcaag 404
>gb|CK206856.1|CK206856 FGAS018467 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1017
Score = 44.1 bits (22), Expect = 0.014
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 270 gactgtgtcaagatactgaagaactgcaag 299
|||||||||||| |||||||||| ||||||
Sbjct: 420 gactgtgtcaagctactgaagaattgcaag 449
>gb|CV769800.1|CV769800 FGAS064192 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 893
Score = 44.1 bits (22), Expect = 0.014
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 agctccctcgtcgacgtcggcg 72
||||||||||||||||||||||
Sbjct: 290 agctccctcgtcgacgtcggcg 311
>gb|CA622402.1|CA622402 wl1n.pk0091.h2 wl1n Triticum aestivum cDNA clone wl1n.pk0091.h2 5'
end, mRNA sequence
Length = 442
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 gcggcagcggcaccgtcttcc 42
|||||||||||||||||||||
Sbjct: 257 gcggcagcggcaccgtcttcc 277
>gb|CK204735.1|CK204735 FGAS013271 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 863
Score = 42.1 bits (21), Expect = 0.057
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 35 cgtcttccaggggatcagctccctcgtcgacgt 67
||||||||||||||| ||||||| ||||||||
Sbjct: 765 cgtcttccaggggataggctccctggtcgacgt 797
>gb|CK205087.1|CK205087 FGAS013624 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 865
Score = 42.1 bits (21), Expect = 0.057
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 35 cgtcttccaggggatcagctccctcgtcgacgt 67
||||||||||||||| ||||||| ||||||||
Sbjct: 761 cgtcttccaggggataggctccctggtcgacgt 793
>gb|BJ229068.1|BJ229068 BJ229068 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl9j17 3', mRNA sequence
Length = 682
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 55 ccctcgtcgacgtcggcggc 74
||||||||||||||||||||
Sbjct: 599 ccctcgtcgacgtcggcggc 580
>gb|BJ295598.1|BJ295598 BJ295598 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl4g06 3', mRNA sequence
Length = 676
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 515 tcgatccataattgaagtct 534
||||||||||||||||||||
Sbjct: 149 tcgatccataattgaagtct 130
>gb|AL821746.1|AL821746 AL821746 N:130 Triticum aestivum cDNA clone B01_N130_plate_31, mRNA
sequence
Length = 621
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 ccctcgtcgacgtcggcggc 74
||||||||||||||||||||
Sbjct: 152 ccctcgtcgacgtcggcggc 171
>gb|BQ801256.1|BQ801256 WHE2812_B08_D16ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2812_B08_D16, mRNA
sequence
Length = 585
Score = 40.1 bits (20), Expect = 0.23
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 252 catgactggggtgatgccgactgtgtcaagatactgaagaactgcaag 299
||||| |||||||||| |||||||||||| || |||| || ||||||
Sbjct: 267 catgattggggtgatgaagactgtgtcaagttattgaaaaattgcaag 314
>gb|CA611655.1|CA611655 wr1.pk0128.c8 wr1 Triticum aestivum cDNA clone wr1.pk0128.c8 5'
end, mRNA sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 405 gatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtgga 456
||||| ||||||||| ||||| || || ||||||||||||| ||||||||
Sbjct: 144 gatctgtacatcatgttcatcaatggcgttgagcgagatgagcaagagtgga 195
>gb|CA720498.1|CA720498 wkm2n.pk007.k14 wkm2n Triticum aestivum cDNA clone
wkm2n.pk007.k14 5' end, mRNA sequence
Length = 405
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 ccctcgtcgacgtcggcggc 74
||||||||||||||||||||
Sbjct: 70 ccctcgtcgacgtcggcggc 89
>gb|CD903630.1|CD903630 G356.110O04R011024 G356 Triticum aestivum cDNA clone G356110O04,
mRNA sequence
Length = 452
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 515 tcgatccataattgaagtct 534
||||||||||||||||||||
Sbjct: 132 tcgatccataattgaagtct 113
>gb|CD903647.1|CD903647 G356.110P03F010919 G356 Triticum aestivum cDNA clone G356110P03,
mRNA sequence
Length = 453
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 515 tcgatccataattgaagtct 534
||||||||||||||||||||
Sbjct: 322 tcgatccataattgaagtct 341
>gb|CD934893.1|CD934893 OV.002E03R010412 OV Triticum aestivum cDNA clone OV002E03, mRNA
sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.23
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 252 catgactggggtgatgccgactgtgtcaagatactgaagaactgcaag 299
||||| |||||||||| |||||||||||| || |||| || ||||||
Sbjct: 441 catgattggggtgatgaagactgtgtcaagttattgaaaaattgcaag 394
>gb|CD939689.1|CD939689 OV.114J05F010312 OV Triticum aestivum cDNA clone OV114J05, mRNA
sequence
Length = 712
Score = 40.1 bits (20), Expect = 0.23
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 252 catgactggggtgatgccgactgtgtcaagatactgaagaactgcaag 299
||||| |||||||||| |||||||||||| || |||| || ||||||
Sbjct: 523 catgattggggtgatgaagactgtgtcaagttattgaaaaattgcaag 570
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 172,511
Number of Sequences: 636343
Number of extensions: 172511
Number of successful extensions: 48895
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48810
Number of HSP's gapped (non-prelim): 81
length of query: 791
length of database: 367,240,239
effective HSP length: 19
effective length of query: 772
effective length of database: 355,149,722
effective search space: 274175585384
effective search space used: 274175585384
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)