BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440806.2.2
(1155 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL810355.1|AL810355 AL810355 e:29 Triticum aestivum cDNA... 505 e-141
gb|BQ903526.1|BQ903526 Ta03_15d09_R Ta03_AAFC_ECORC_Fusariu... 159 5e-037
gb|CV769347.1|CV769347 FGAS063738 Triticum aestivum FGAS: L... 155 8e-036
gb|CV769371.1|CV769371 FGAS063762 Triticum aestivum FGAS: L... 155 8e-036
gb|CK161286.1|CK161286 FGAS013852 Triticum aestivum FGAS: L... 151 1e-034
gb|BJ245701.1|BJ245701 BJ245701 Y. Ogihara unpublished cDNA... 145 8e-033
gb|BJ247566.1|BJ247566 BJ247566 Y. Ogihara unpublished cDNA... 133 3e-029
gb|AL812363.1|AL812363 AL812363 e:310 Triticum aestivum cDN... 62 9e-008
gb|BJ208137.1|BJ208137 BJ208137 Y. Ogihara unpublished cDNA... 54 2e-005
gb|BJ267963.1|BJ267963 BJ267963 Y. Ogihara unpublished cDNA... 54 2e-005
gb|CA728781.1|CA728781 wdi1c.pk005.m2 wdi1c Triticum aestiv... 54 2e-005
gb|CD898293.1|CD898293 G174.108K23F010821 G174 Triticum aes... 54 2e-005
gb|CD938589.1|CD938589 OV.110G14F010312 OV Triticum aestivu... 54 2e-005
gb|AL812716.1|AL812716 AL812716 e:310 Triticum aestivum cDN... 54 2e-005
gb|BF484839.1|BF484839 WHE2320_C04_F08ZS Wheat pre-anthesis... 46 0.005
gb|AL809287.1|AL809287 AL809287 a:11 Triticum aestivum cDNA... 46 0.005
gb|CV778342.1|CV778342 FGAS072750 Triticum aestivum FGAS: L... 46 0.005
gb|CA500791.1|CA500791 WHE4024_G02_N04ZT Wheat meiotic anth... 42 0.084
gb|CA741910.1|CA741910 wia1c.pk002.i8 wia1c Triticum aestiv... 42 0.084
gb|CA679978.1|CA679978 wlm4.pk0022.b3 wlm4 Triticum aestivu... 40 0.33
>gb|AL810355.1|AL810355 AL810355 e:29 Triticum aestivum cDNA clone D07_e29_plate_1, mRNA
sequence
Length = 688
Score = 505 bits (255), Expect = e-141
Identities = 483/558 (86%), Gaps = 2/558 (0%)
Strand = Plus / Plus
Query: 56 caggagctgatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatc 115
|||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 128 caggagctcatcgtgaacagcaacaagacgatcgacgggcgcggcgcgcaggtgcacatc 187
Query: 116 atgttcgcgcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatc 175
| | || ||||| ||||||||| |||| | ||| | | |||||| | ||||||
Sbjct: 188 acgggggcacagatgacgctgcagggcgtgaggcacgtgatcatccacaacgtccacatc 247
Query: 176 cacgactccaaggcgcactcgggcggcatgatccgcgactcgaagcggcactacgggctg 235
||| ||||| | |||||||||||||||||||||| ||||| |||| |||||||||| |
Sbjct: 248 caccactccgtgccgcactcgggcggcatgatccgggactccaagcaccactacgggcgg 307
Query: 236 cgcacgcggagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgac 295
||||| |||||||||||||||||||||||| | || || ||||||| |||||||||||||
Sbjct: 308 cgcacccggagcgacggcgacggcgtctccatcctctcctccagcagcgtgtggatcgac 367
Query: 296 cacgtgtccatgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggcc 355
||||||||||||||||||||| ||||||| || ||||||||||| | ||| || || |||
Sbjct: 368 cacgtgtccatgtccagctgcgccgacggcctcatcgacgtggtcagcggctccaccgcc 427
Query: 356 atcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagc 415
||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||
Sbjct: 428 atcaccgtgtccaacagccacttcaccaagcatgaccacgtgatgctgttcggcgctngc 487
Query: 416 aacgacag-cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggccg 474
||| || | ||||||| | ||||||||||||| |||||||||||||||||||||
Sbjct: 488 aac-acggaggagcaggacaggatgatgcaggtcaccgtggcgttcaaccacttcggcaa 546
Query: 475 cgggctggtgcagcggatgccgcgctgccgctacggcttcttccacgtggtgaacaacga 534
|||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct: 547 ggggctggtgcagcggatgccccgctgccgcttcggcttcttccaggtggtgaacaacga 606
Query: 535 ctacacgcactggatcatgtacgccatcggcggcaacatgaaccccaccatcatcagcca 594
||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 607 ctacacgcactggcagatgtacgccatcggcggcaaccgggaccccaccatcatcagcca 666
Query: 595 gggcaaccgcttcatcgc 612
||| ||||| ||||||||
Sbjct: 667 ggggaaccggttcatcgc 684
Score = 44.1 bits (22), Expect = 0.021
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 ggaccggccgctgtggatcgtgttcg 29
||||||||||||||||||||| ||||
Sbjct: 75 ggaccggccgctgtggatcgtcttcg 100
>gb|BQ903526.1|BQ903526 Ta03_15d09_R
Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta03_15d09, mRNA
sequence
Length = 367
Score = 159 bits (80), Expect = 5e-037
Identities = 190/228 (83%)
Strand = Plus / Minus
Query: 327 tgatcgacgtggtgaacgggtcgacggccatcaccgtgtccaacagccacttcaccgacc 386
|||||||||||||| | ||| |||||| ||||||| ||||||| |||| | || |||
Sbjct: 228 tgatcgacgtggtggccatgtccacggccgtcaccgtctccaacacccacctggcccacc 169
Query: 387 acgaccacgtgatgctgttcggcgccagcaacgacagcccgcaggacgcggtgatgcagg 446
|| || |||||||||| |||||||||||| || ||| ||| ||||| |||||||||||
Sbjct: 168 acaacgacgtgatgctcttcggcgccagcgaccacaagccggaggacaaggtgatgcagg 109
Query: 447 tcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgctgccgct 506
|||| || || |||||||||||||| | || ||||||||| ||||||| |||||||||
Sbjct: 108 tcaccgtcgccttcaaccacttcgggaggggcctggtgcagaggatgccwygctgccgct 49
Query: 507 acggcttcttccacgtggtgaacaacgactacacgcactggatcatgt 554
|||||||||||||||| || ||||||| |||||| ||||| ||||||
Sbjct: 48 acggcttcttccacgtcgtcaacaacgrctacaccractggctcatgt 1
>gb|CV769347.1|CV769347 FGAS063738 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 864
Score = 155 bits (78), Expect = 8e-036
Identities = 147/170 (86%)
Strand = Plus / Plus
Query: 436 ggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgcc 495
||||||||||||||| || || |||||||||||||| | || ||||||||| |||||||
Sbjct: 125 ggtgatgcaggtcaccgtcgccttcaaccacttcgggagaggcctggtgcagaggatgcc 184
Query: 496 gcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgta 555
|||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||
Sbjct: 185 tcgctgccgctacggcttcttccacgtcgtcaacaacgactacaccaactggctcatgta 244
Query: 556 cgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgct 605
||||||||| |||| || ||||||||| |||||||||| |||||||
Sbjct: 245 cgccatcggaggcagcagcgcgcccaccatcctcagccaggggaaccgct 294
>gb|CV769371.1|CV769371 FGAS063762 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 852
Score = 155 bits (78), Expect = 8e-036
Identities = 147/170 (86%)
Strand = Plus / Plus
Query: 436 ggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgcc 495
||||||||||||||| || || |||||||||||||| | || ||||||||| |||||||
Sbjct: 123 ggtgatgcaggtcaccgtcgccttcaaccacttcgggagaggcctggtgcagaggatgcc 182
Query: 496 gcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgta 555
|||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||
Sbjct: 183 tcgctgccgctacggcttcttccacgtcgtcaacaacgactacaccaactggctcatgta 242
Query: 556 cgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgct 605
||||||||| |||| || ||||||||| |||||||||| |||||||
Sbjct: 243 cgccatcggaggcagcagcgcgcccaccatcctcagccaggggaaccgct 292
>gb|CK161286.1|CK161286 FGAS013852 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 899
Score = 151 bits (76), Expect = 1e-034
Identities = 145/168 (86%)
Strand = Plus / Plus
Query: 436 ggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgcc 495
||||||||||||||| || || |||||||||||||| | || ||||||||| |||||||
Sbjct: 119 ggtgatgcaggtcaccgtcgccttcaaccacttcgggagaggcctggtgcagaggatgcc 178
Query: 496 gcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgta 555
|||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||
Sbjct: 179 tcgctgccgctacggcttcttccacgtcgtcaacaacgactacaccaactggctcatgta 238
Query: 556 cgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccg 603
||||||||| |||| || ||||||||| |||||||||| |||||
Sbjct: 239 cgccatcggaggcagcagcgcgcccaccatcgtcagccaggggaaccg 286
>gb|BJ245701.1|BJ245701 BJ245701 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf1m10 5', mRNA sequence
Length = 614
Score = 145 bits (73), Expect = 8e-033
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
Sbjct: 125 ttcttccacgtggtgaacaacgactacacccactggctcatgtacgccatcggcggcagc 184
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgc 612
| |||||| ||||||||||||||||| ||||||| ||||||
Sbjct: 185 aagaacccgaccatcatcagccaggggaaccgctacatcgc 225
>gb|BJ247566.1|BJ247566 BJ247566 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2m10 5', mRNA sequence
Length = 453
Score = 133 bits (67), Expect = 3e-029
Identities = 92/101 (91%)
Strand = Plus / Plus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
Sbjct: 101 ttcttccacgtggtgaacaacgactacacccactggctcatgtacgccatcggcggcagc 160
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgc 612
| |||||| |||||||| |||||||| ||||| | ||||||
Sbjct: 161 aagaacccgaccatcatnagccaggggaaccgntacatcgc 201
>gb|AL812363.1|AL812363 AL812363 e:310 Triticum aestivum cDNA clone A04_e310_plate_3, mRNA
sequence
Length = 529
Score = 61.9 bits (31), Expect = 9e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 323 cttccacgtggtgaacaatgactacacccactgggagatgtacgccatcgg 373
>gb|BJ208137.1|BJ208137 BJ208137 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh6p12 5', mRNA sequence
Length = 585
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| ||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 326 cttccatgtggtgaacaatgactacacccactgggagatgtacgccatcgg 376
>gb|BJ267963.1|BJ267963 BJ267963 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh14e12 5', mRNA sequence
Length = 654
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| ||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 30 cttccatgtggtgaacaatgactacacccactgggagatgtacgccatcgg 80
>gb|CA728781.1|CA728781 wdi1c.pk005.m2 wdi1c Triticum aestivum cDNA clone wdi1c.pk005.m2 5'
end, mRNA sequence
Length = 589
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| ||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 28 cttccatgtggtgaacaatgactacacccactgggagatgtacgccatcgg 78
>gb|CD898293.1|CD898293 G174.108K23F010821 G174 Triticum aestivum cDNA clone G174108K23,
mRNA sequence
Length = 734
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| ||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 204 cttccatgtggtgaacaatgactacacccactgggagatgtacgccatcgg 254
>gb|CD938589.1|CD938589 OV.110G14F010312 OV Triticum aestivum cDNA clone OV110G14, mRNA
sequence
Length = 708
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| ||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 394 cttccatgtggtgaacaatgactacacccactgggagatgtacgccatcgg 444
>gb|AL812716.1|AL812716 AL812716 e:310 Triticum aestivum cDNA clone H11_e310_plate_7, mRNA
sequence
Length = 540
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||||||| ||||||| |||||||| |||||| ||||||||||||||
Sbjct: 329 cttccacgtgctgaacaatgactacacccactgggagatgtacgccatcgg 379
>gb|BF484839.1|BF484839 WHE2320_C04_F08ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2320_C04_F08, mRNA sequence
Length = 368
Score = 46.1 bits (23), Expect = 0.005
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcac 112
||||||| ||||||||||| || ||||||||||||
Sbjct: 38 acaagaccatcgacgggcgcggggcgcaggtgcac 72
Score = 40.1 bits (20), Expect = 0.33
Identities = 62/76 (81%)
Strand = Plus / Plus
Query: 327 tgatcgacgtggtgaacgggtcgacggccatcaccgtgtccaacagccacttcaccgacc 386
|||||||||||||| | ||| |||||| ||||||| ||||||| |||| | || |||
Sbjct: 290 tgatcgacgtggtggccatgtccacggccgtcaccgtctccaacacccacctggcccacc 349
Query: 387 acgaccacgtgatgct 402
|| || ||||||||||
Sbjct: 350 acaacgacgtgatgct 365
>gb|AL809287.1|AL809287 AL809287 a:11 Triticum aestivum cDNA clone B01_a11_plate_16, mRNA
sequence
Length = 240
Score = 46.1 bits (23), Expect = 0.005
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagctgatcgt 69
||||||||||||||| ||| |||||||||||| ||| || | |||||||| |||||
Sbjct: 151 gccgctgtggatcgtcttcaagcgcgacatggtcatcacactcagccaggagctcatcgt 210
Query: 70 gaaccacaacaagacgatcgacgggcg 96
|||| | |||||| |||||||||||
Sbjct: 211 gaacagcttcaagaccatcgacgggcg 237
>gb|CV778342.1|CV778342 FGAS072750 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 829
Score = 46.1 bits (23), Expect = 0.005
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcac 112
||||||| ||||||||||| || ||||||||||||
Sbjct: 682 acaagaccatcgacgggcgcggggcgcaggtgcac 716
>gb|CA500791.1|CA500791 WHE4024_G02_N04ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4024_G02_N04, mRNA sequence
Length = 594
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 627 acgccaaggaggtgaccaagc 647
|||||||||||||||||||||
Sbjct: 489 acgccaaggaggtgaccaagc 509
>gb|CA741910.1|CA741910 wia1c.pk002.i8 wia1c Triticum aestivum cDNA clone wia1c.pk002.i8 5'
end, mRNA sequence
Length = 560
Score = 42.1 bits (21), Expect = 0.084
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatggtgatc 46
||||||||||||| | |||||| | ||||||||||||
Sbjct: 467 gccgctgtggatcatcttcgcgagggacatggtgatc 503
>gb|CA679978.1|CA679978 wlm4.pk0022.b3 wlm4 Triticum aestivum cDNA clone wlm4.pk0022.b3 5'
end, mRNA sequence
Length = 602
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 629 gccaaggaggtgaccaagcg 648
||||||||||||||||||||
Sbjct: 43 gccaaggaggtgaccaagcg 62
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 264,742
Number of Sequences: 636343
Number of extensions: 264742
Number of successful extensions: 73433
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73368
Number of HSP's gapped (non-prelim): 64
length of query: 1155
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1135
effective length of database: 354,513,379
effective search space: 402372685165
effective search space used: 402372685165
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)