BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440450.2.1
(1291 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG605030.1|BG605030 WHE2326_D09_G18ZS Wheat pre-anthesis... 119 5e-025
gb|BJ314974.1|BJ314974 BJ314974 Y. Ogihara unpublished cDNA... 119 5e-025
gb|CD893667.1|CD893667 G118.124D20F010828 G118 Triticum aes... 119 5e-025
gb|BJ259331.1|BJ259331 BJ259331 Y. Ogihara unpublished cDNA... 111 1e-022
gb|BJ303918.1|BJ303918 BJ303918 Y. Ogihara unpublished cDNA... 111 1e-022
gb|BJ315073.1|BJ315073 BJ315073 Y. Ogihara unpublished cDNA... 111 1e-022
gb|BJ315840.1|BJ315840 BJ315840 Y. Ogihara unpublished cDNA... 111 1e-022
gb|AL818350.1|AL818350 AL818350 j:223 Triticum aestivum cDN... 92 1e-016
gb|BJ316692.1|BJ316692 BJ316692 Y. Ogihara unpublished cDNA... 76 7e-012
gb|BE446097.1|BE446097 WHE1141_C11_E21ZS Wheat etiolated se... 68 2e-009
gb|BJ320553.1|BJ320553 BJ320553 Y. Ogihara unpublished cDNA... 66 6e-009
gb|BJ320774.1|BJ320774 BJ320774 Y. Ogihara unpublished cDNA... 66 6e-009
gb|AJ613008.1|AJ613008 AJ613008 Triticum turgidum subsp. du... 56 6e-006
gb|CA684662.1|CA684662 wlm96.pk027.m19 wlm96 Triticum aesti... 40 0.37
gb|BT009366.1| Triticum aestivum clone wlm96.pk027.m19:fis,... 40 0.37
>gb|BG605030.1|BG605030 WHE2326_D09_G18ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2326_D09_G18, mRNA sequence
Length = 599
Score = 119 bits (60), Expect = 5e-025
Identities = 174/212 (82%)
Strand = Plus / Minus
Query: 835 ctcattttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaac 894
||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||| ||
Sbjct: 442 ctcattttcccagcgattcacttctatcctgcctgtaccatcatcaagaatgaattgtac 383
Query: 895 atctgtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctc 954
|||||| | ||||| ||||| | ||||||||| |||||||||| ||| ||||||||
Sbjct: 382 atctgtcatccgctctgccttattcatcatgcgtcctacaagcctaaccgtggacacctc 323
Query: 955 aacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctg 1014
||| |||| |||||| | ||| |||| || |||| || | ||||||||| ||||
Sbjct: 322 ggtgccattgacagcgaaactggacttgtcgtcgttggtctgggacgcgtccataatctg 263
Query: 1015 tttcacggtgagcgggagcagcgtctgcgcgc 1046
|| ||||||||||||||||||||||||||||
Sbjct: 262 cttgacggtgagcgggagcagcgtctgcgcgc 231
>gb|BJ314974.1|BJ314974 BJ314974 Y. Ogihara unpublished cDNA library, Wh_yf Triticum aestivum
cDNA clone whyf15e06 5', mRNA sequence
Length = 646
Score = 119 bits (60), Expect = 5e-025
Identities = 174/212 (82%)
Strand = Plus / Minus
Query: 835 ctcattttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaac 894
||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||| ||
Sbjct: 414 ctcattttcccagcgattcacttctatcctgcctgtaccatcatcaagaatgaattgtac 355
Query: 895 atctgtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctc 954
|||||| | ||||| ||||| | ||||||||| |||||||||| ||| ||||||||
Sbjct: 354 atctgtcatccgctctgccttattcatcatgcgtcctacaagcctaaccgtggacacctc 295
Query: 955 aacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctg 1014
||| |||| |||||| | ||| |||| || |||| || | ||||||||| ||||
Sbjct: 294 ggtgccattgacagcgaaactggacttgtcgtcgttggtctgggacgcgtccataatctg 235
Query: 1015 tttcacggtgagcgggagcagcgtctgcgcgc 1046
|| ||||||||||||||||||||||||||||
Sbjct: 234 cttgacggtgagcgggagcagcgtctgcgcgc 203
>gb|CD893667.1|CD893667 G118.124D20F010828 G118 Triticum aestivum cDNA clone G118124D20, mRNA
sequence
Length = 657
Score = 119 bits (60), Expect = 5e-025
Identities = 174/212 (82%)
Strand = Plus / Minus
Query: 835 ctcattttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaac 894
||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||| ||
Sbjct: 427 ctcattttcccagcgattcacttctatcctgcctgtaccatcatcaagaatgaatcgtac 368
Query: 895 atctgtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctc 954
|||||| | ||||| ||||| | ||||||||| |||||||||| ||| ||||||||
Sbjct: 367 atctgtcatccgctctgccttattcatcatgcgtcctacaagcctaaccgtggacacctc 308
Query: 955 aacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctg 1014
||| |||| |||||| | ||| |||| || |||| || | ||||||||| ||||
Sbjct: 307 ggtgccattgacagcgaaactggacttgtcgtcgttggtctgggacgcgtccataatctg 248
Query: 1015 tttcacggtgagcgggagcagcgtctgcgcgc 1046
|| ||||||||||||||||||||||||||||
Sbjct: 247 cttgacggtgagcgggagcagcgtctgcgcgc 216
>gb|BJ259331.1|BJ259331 BJ259331 Y. Ogihara unpublished cDNA library, Wh_h Triticum aestivum
cDNA clone whh12i01 5', mRNA sequence
Length = 556
Score = 111 bits (56), Expect = 1e-022
Identities = 173/212 (81%)
Strand = Plus / Minus
Query: 835 ctcattttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaac 894
||||||| ||||||||||||| |||||| |||| ||||||||||||||| ||||| ||
Sbjct: 443 ctcatttgcccagcgattcacttctatcctgcctgtaccatcatcaagaatgaatcgtac 384
Query: 895 atctgtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctc 954
|||||||| ||||| ||||| | ||||||||| |||||||||| ||| ||||||||
Sbjct: 383 atctgtgatccgctctgccttattcatcatgcgtcctacaagcctaaccgtggacacctc 324
Query: 955 aacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctg 1014
||| |||| ||||| | ||| |||| || |||| || | ||||||||| ||||
Sbjct: 323 ggtgccattgacaacgaaactggacttgtcgtcgttggtctgggacgcgtccataatctg 264
Query: 1015 tttcacggtgagcgggagcagcgtctgcgcgc 1046
|| ||||||||||||||||||||||||||||
Sbjct: 263 cttgacggtgagcgggagcagcgtctgcgcgc 232
>gb|BJ303918.1|BJ303918 BJ303918 Y. Ogihara unpublished cDNA library, Wh_yd Triticum aestivum
cDNA clone whyd21l10 5', mRNA sequence
Length = 598
Score = 111 bits (56), Expect = 1e-022
Identities = 173/212 (81%)
Strand = Plus / Minus
Query: 835 ctcattttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaac 894
||||||| ||||||||||||| |||||| |||| ||||||||||||||| ||||| ||
Sbjct: 425 ctcatttgcccagcgattcacttctatcctgcctgtaccatcatcaagaatgaatcgtac 366
Query: 895 atctgtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctc 954
|||||||| ||||| ||||| | ||||||||| |||||||||| ||| ||||||||
Sbjct: 365 atctgtgatccgctctgccttattcatcatgcgtcctacaagcctaaccgtggacacctc 306
Query: 955 aacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctg 1014
||| |||| ||||| | ||| |||| || |||| || | ||||||||| ||||
Sbjct: 305 ggtgccattgacaacgaaactggacttgtcgtcgttggtctgggacgcgtccataatctg 246
Query: 1015 tttcacggtgagcgggagcagcgtctgcgcgc 1046
|| ||||||||||||||||||||||||||||
Sbjct: 245 cttgacggtgagcgggagcagcgtctgcgcgc 214
>gb|BJ315073.1|BJ315073 BJ315073 Y. Ogihara unpublished cDNA library, Wh_yf Triticum aestivum
cDNA clone whyf15k21 5', mRNA sequence
Length = 665
Score = 111 bits (56), Expect = 1e-022
Identities = 173/212 (81%)
Strand = Plus / Minus
Query: 835 ctcattttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaac 894
||||||| ||||||||||||| |||||| |||| ||||||||||||||| ||||| ||
Sbjct: 410 ctcatttgcccagcgattcacttctatcctgcctgtaccatcatcaagaatgaatcgtac 351
Query: 895 atctgtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctc 954
|||||||| ||||| ||||| | ||||||||| |||||||||| ||| ||||||||
Sbjct: 350 atctgtgatccgctctgccttattcatcatgcgtcctacaagcctaaccgtggacacctc 291
Query: 955 aacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctg 1014
||| |||| ||||| | ||| |||| || |||| || | ||||||||| ||||
Sbjct: 290 ggtgccattgacaacgaaactggacttgtcgtcgttggtctgggacgcgtccataatctg 231
Query: 1015 tttcacggtgagcgggagcagcgtctgcgcgc 1046
|| ||||||||||||||||||||||||||||
Sbjct: 230 cttgacggtgagcgggagcagcgtctgcgcgc 199
Score = 65.9 bits (33), Expect = 6e-009
Identities = 108/133 (81%)
Strand = Plus / Minus
Query: 662 tccatatgcacctgaatgcagtgcagaaagtgacaggttatttcattgaagtttgtcaca 721
|||| |||||| | |||||||| |||||||||| ||||| |||||| |||| || |||
Sbjct: 583 tccaaatgcacataaatgcagtacagaaagtgatgtgttatatcattgtagttggttaca 524
Query: 722 cgccgcacagcataggcaactacatggcgctttccttgaaaacctttcaaaccgccaatg 781
||||||| | ||| ||||| | || ||||| |||||||||||||||| ||| ||| ||
Sbjct: 523 agccgcacggaataagcaacaatgtgacgcttcccttgaaaacctttcagaccaccattg 464
Query: 782 actatgacatagt 794
|| || |||||||
Sbjct: 463 acaataacatagt 451
>gb|BJ315840.1|BJ315840 BJ315840 Y. Ogihara unpublished cDNA library, Wh_yf Triticum aestivum
cDNA clone whyf20g05 5', mRNA sequence
Length = 596
Score = 111 bits (56), Expect = 1e-022
Identities = 173/212 (81%)
Strand = Plus / Minus
Query: 835 ctcattttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaac 894
||||||| ||||||||||||| |||||| |||| ||||||||||||||| ||||| ||
Sbjct: 483 ctcatttgcccagcgattcacttctatcctgcctgtaccatcatcaagaatgaatcgtac 424
Query: 895 atctgtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctc 954
|||||||| ||||| ||||| | ||||||||| |||||||||| ||| ||||||||
Sbjct: 423 atctgtgatccgctctgccttattcatcatgcgtcctacaagcctaaccgtggacacctc 364
Query: 955 aacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctg 1014
||| |||| ||||| | ||| |||| || |||| || | ||||||||| ||||
Sbjct: 363 ggtgccattgacaacgaaactggacttgtcgtcgttggtctgggacgcgtccataatctg 304
Query: 1015 tttcacggtgagcgggagcagcgtctgcgcgc 1046
|| ||||||||||||||||||||||||||||
Sbjct: 303 cttgacggtgagcgggagcagcgtctgcgcgc 272
>gb|AL818350.1|AL818350 AL818350 j:223 Triticum aestivum cDNA clone F04_j223_plate_15, mRNA
sequence
Length = 543
Score = 91.7 bits (46), Expect = 1e-016
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 835 ctcattttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaac 894
||||||| ||||||||||||| |||||| |||| |||| |||||||||| ||||| ||
Sbjct: 432 ctcatttgcccagcgattcacttctatcctgcctgtacnatcatcaagaatgaatcgtac 373
Query: 895 atctgtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctc 954
|||||||| ||||| ||||| | ||||||||| |||||||||| ||| ||||||||
Sbjct: 372 atctgtgatccgctctgccttattcatcatgcgtcctacaagcctaaccgtggacacctc 313
Query: 955 aacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctg 1014
||| |||| ||||| | ||| ||| || |||| || | ||||||||| ||||
Sbjct: 312 ggtgccattgacaacgaaactggactagtcgtcgttggtctgggacgcgtccataatctg 253
Query: 1015 tttcacggtgagcgggagcagcgtctgcg 1043
|| |||||||||||||||||||||||||
Sbjct: 252 cttgacggtgagcgggagcagcgtctgcg 224
>gb|BJ316692.1|BJ316692 BJ316692 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf24f12 5', mRNA sequence
Length = 200
Score = 75.8 bits (38), Expect = 7e-012
Identities = 89/106 (83%)
Strand = Plus / Minus
Query: 835 ctcattttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaac 894
||||||| ||||||||||||| |||||| |||| ||||||||||||||| ||||| ||
Sbjct: 131 ctcatttgcccagcgattcacttctatcctgcctgtaccatcatcaagaatgaatcgtac 72
Query: 895 atctgtgacacgctcaaccttacctagcatgcgtccaacaagccta 940
|||||||| ||||| ||||| | ||||||||| |||||||||
Sbjct: 71 atctgtgatccgctctgccttattcatcatgcgtcctacaagccta 26
>gb|BE446097.1|BE446097 WHE1141_C11_E21ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1141_C11_E21,
mRNA sequence
Length = 437
Score = 67.9 bits (34), Expect = 2e-009
Identities = 142/178 (79%)
Strand = Plus / Minus
Query: 869 gtaccatcatcaagagtgaatacaacatctgtgacacgctcaaccttacctagcatgcgt 928
||||||||||| ||| ||||| |||||||||| ||||| ||||| | |||||||
Sbjct: 436 gtaccatcatcgagaatgaatcgtacatctgtgatccgctctgccttattcatcatgcgt 377
Query: 929 ccaacaagcctaatcgtagacacctcaacgccgttgatggcgaaattagacctgtcaccg 988
|| |||||||||| ||| |||||||| ||| |||| ||||| | ||| |||| ||
Sbjct: 376 cctacaagcctaaccgtggacacctcggtgccattgacaacgaaactggacttgtcgtcg 317
Query: 989 ctggtttgcgccgcgtccatggtctgtttcacggtgagcgggagcagcgtctgcgcgc 1046
|||| || | ||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct: 316 ttggtctgggacgcgtccataatctgcttgacggtgagcgggagcagcgtctgcgcgc 259
>gb|BJ320553.1|BJ320553 BJ320553 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf15k21 3', mRNA sequence
Length = 726
Score = 65.9 bits (33), Expect = 6e-009
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 662 tccatatgcacctgaatgcagtgcagaaagtgacaggttatttcattgaagtttgtcaca 721
|||| |||||| | |||||||| |||||||||| ||||| |||||| |||| || |||
Sbjct: 541 tccaaatgcacataaatgcagtacagaaagtgatgtgttatatcattgtagttggttaca 600
Query: 722 cgccgcacagcataggcaactacatggcgctttccttgaaaacctttcaaaccgccaatg 781
||||||| | ||| ||||| | || ||||| |||||||||||||||| ||| ||| ||
Sbjct: 601 agccgcacggaataagcaacaatgtgacgcttcccttgaaaacctttcagaccaccattg 660
Query: 782 actatgacatagt 794
|| || |||||||
Sbjct: 661 acaataacatagt 673
>gb|BJ320774.1|BJ320774 BJ320774 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf16k21 3', mRNA sequence
Length = 133
Score = 65.9 bits (33), Expect = 6e-009
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 667 atgcacctgaatgcagtgcagaaagtgacaggttatttcattgaagtttgtcacacgccg 726
|||||| | |||||||| |||||||||| ||||| |||||| |||| || ||| ||||
Sbjct: 3 atgcacataaatgcagtacagaaagtgatgtgttatatcattgtagttggttacaagccg 62
Query: 727 cacagcataggcaactacatggcgctttccttgaaaacctttcaaaccgccaatgactat 786
||| | ||| ||||| | || ||||| |||||||||||||||| ||| ||| |||| ||
Sbjct: 63 cacggaataagcaacaatgtgacgcttnccttgaaaacctttcagaccaccattgacaat 122
Query: 787 gacatagt 794
|||||||
Sbjct: 123 aacatagt 130
>gb|AJ613008.1|AJ613008 AJ613008 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 08114R, mRNA
sequence
Length = 263
Score = 56.0 bits (28), Expect = 6e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1019 acggtgagcgggagcagcgtctgcgcgc 1046
||||||||||||||||||||||||||||
Sbjct: 250 acggtgagcgggagcagcgtctgcgcgc 223
>gb|CA684662.1|CA684662 wlm96.pk027.m19 wlm96 Triticum aestivum cDNA clone wlm96.pk027.m19
5' end, mRNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 752 tttccttgaaaacctttcaa 771
||||||||||||||||||||
Sbjct: 57 tttccttgaaaacctttcaa 38
>gb|BT009366.1| Triticum aestivum clone wlm96.pk027.m19:fis, full insert mRNA
sequence
Length = 1968
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 752 tttccttgaaaacctttcaa 771
||||||||||||||||||||
Sbjct: 57 tttccttgaaaacctttcaa 38
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 238,934
Number of Sequences: 636343
Number of extensions: 238934
Number of successful extensions: 69436
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69401
Number of HSP's gapped (non-prelim): 35
length of query: 1291
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1271
effective length of database: 354,513,379
effective search space: 450586504709
effective search space used: 450586504709
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)