BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430991.2.1
(515 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN829533.1|DN829533 KUCD01_11_E11_T3 WSWR cDNA library T... 490 e-137
gb|CF133702.1|CF133702 WHE4362_C07_F14ZT Wheat meiotic flor... 240 8e-062
gb|DR740515.1|DR740515 FGAS000462 Triticum aestivum FGAS: L... 159 2e-037
>gb|DN829533.1|DN829533 KUCD01_11_E11_T3 WSWR cDNA library Triticum aestivum cDNA, mRNA
sequence
Length = 943
Score = 490 bits (247), Expect = e-137
Identities = 399/450 (88%)
Strand = Plus / Minus
Query: 12 ctgaatttaattggtgttccacgactaccactgccagagaagtagaacttctgtgtagca 71
||||| || ||||||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct: 507 ctgaacttgattggtgttccacgattaccacttccagagaagtagaaattctgtgtagca 448
Query: 72 gcattctgtagctgtttaagaacgggaacatacgatgcattgagccaggtaaagtcctcc 131
|||| ||| |||||||||||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 447 gcatcctggagctgtttaagaacaggaacatacgaagcatttagccaggtgaagtcctcc 388
Query: 132 accttttgtatctccacagtgacccctctgtagtcattcatgccaaaccatgccttcatc 191
|||||||||||||||||| || |||||||||| ||||||| | ||||||| ||| ||||
Sbjct: 387 accttttgtatctccacaatggcccctctgtaatcattcaaggcaaaccacgccctcatt 328
Query: 192 ggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcagggtgcctcgag 251
||| ||||||||| ||| || ||||| || || ||||||| ||| ||||||||| | ||
Sbjct: 327 ggatcatagttcacctcgtcggtcaccaaatggaaaacaatcttttcagggtgctttgaa 268
Query: 252 tttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctgagaagacacaa 311
|| | || |||||||| || ||||| || || || | ||||||||| ||||| ||||||
Sbjct: 267 ttcagagttgtagaattgaccacaacagagaccgcgatgatgttgtccgagaaaacacaa 208
Query: 312 aaatgatagaggctgttatccctcagattgctctgcactgctgggctcctatccgaaaac 371
| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 207 tagtgatagaggctgttatccctcagattgctctgcactgctgggctcctatccaagaac 148
Query: 372 ttcctctgaagctcgggactcttgaaccantccatggttaaccggacaccaaggcaataa 431
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 147 ttcctctgaagctcggcactcttgaaccattccatggttaaccggacaccaaggcaataa 88
Query: 432 agtccctttgggagctcctcagcagcaatc 461
|| |||||||||||||||||||||||||||
Sbjct: 87 agcccctttgggagctcctcagcagcaatc 58
>gb|CF133702.1|CF133702 WHE4362_C07_F14ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4362_C07_F14, mRNA sequence
Length = 747
Score = 240 bits (121), Expect = 8e-062
Identities = 202/229 (88%)
Strand = Plus / Minus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
||||||| || ||||| || ||||||||||| ||| ||||||| |||||||||||||| |
Sbjct: 240 actttggatttctgaacttgattggtgttccgcgattaccacttccagagaagtagaaat 181
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 180 tctgtgtagcagcatcctggagctgtttaagaacaggaacatacgaagcatttagccagg 121
Query: 121 taaagtcctccaccttttgtatctccacagtgacccctctgtagtcattcatgccaaacc 180
| ||||||||||||||||||||||||||| || |||||||||||||||||| | ||||||
Sbjct: 120 tgaagtcctccaccttttgtatctccacaatggcccctctgtagtcattcaaggcaaacc 61
Query: 181 atgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaac 229
| ||| |||| ||| ||||||| | |||||| ||||| || ||||||||
Sbjct: 60 aagccctcattggatcatagttgacctcatcggtcaccaaatgaaaaac 12
>gb|DR740515.1|DR740515 FGAS000462 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1160
Score = 159 bits (80), Expect = 2e-037
Identities = 120/134 (89%)
Strand = Plus / Minus
Query: 12 ctgaatttaattggtgttccacgactaccactgccagagaagtagaacttctgtgtagca 71
||||| || ||||||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct: 149 ctgaacttgattggtgttccacgattaccacttccagagaagtagaaattctgtgtagca 90
Query: 72 gcattctgtagctgtttaagaacgggaacatacgatgcattgagccaggtaaagtcctcc 131
|||| ||| |||||||||||||| ||||||||||| ||||| |||||||| | ||||||
Sbjct: 89 gcatcctggagctgtttaagaacaggaacatacgaagcatttagccaggtganatcctcc 30
Query: 132 accttttgtatctc 145
||||||||| ||||
Sbjct: 29 accttttgtntctc 16
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,649
Number of Sequences: 636343
Number of extensions: 81649
Number of successful extensions: 21770
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21766
Number of HSP's gapped (non-prelim): 3
length of query: 515
length of database: 367,240,239
effective HSP length: 19
effective length of query: 496
effective length of database: 355,149,722
effective search space: 176154262112
effective search space used: 176154262112
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)