BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.2
(910 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE498386.1|BE498386 WHE0952_C04_E08ZS Wheat pre-anthesis... 254 9e-066
gb|BJ252455.1|BJ252455 BJ252455 Y. Ogihara unpublished cDNA... 254 9e-066
emb|AJ577380.1|TAE577380 Triticum aestivum partial mRNA for... 254 9e-066
gb|BJ263952.1|BJ263952 BJ263952 Y. Ogihara unpublished cDNA... 246 2e-063
gb|BJ254491.1|BJ254491 BJ254491 Y. Ogihara unpublished cDNA... 135 6e-030
gb|BJ257358.1|BJ257358 BJ257358 Y. Ogihara unpublished cDNA... 111 9e-023
gb|BJ262940.1|BJ262940 BJ262940 Y. Ogihara unpublished cDNA... 111 9e-023
gb|CA593599.1|CA593599 wpa1c.pk002.n10 wpa1c Triticum aesti... 90 3e-016
gb|BQ903982.1|BQ903982 Ta03_21e08_R Ta03_AAFC_ECORC_Fusariu... 82 8e-014
gb|BI751763.1|BI751763 Ta01_12e06_R Ta01_AAFC_ECORC_Fusariu... 78 1e-012
gb|BJ255233.1|BJ255233 BJ255233 Y. Ogihara unpublished cDNA... 46 0.004
gb|BJ322623.1|BJ322623 BJ322623 Y. Ogihara unpublished cDNA... 46 0.004
gb|CA640817.1|CA640817 wre1n.pk0020.f8 wre1n Triticum aesti... 46 0.004
gb|CK200779.1|CK200779 FGAS009296 Triticum aestivum FGAS: L... 46 0.004
gb|CA597345.1|CA597345 wpa1c.pk016.e13 wpa1c Triticum aesti... 42 0.066
>gb|BE498386.1|BE498386 WHE0952_C04_E08ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0952_C04_E08, mRNA sequence
Length = 526
Score = 254 bits (128), Expect = 9e-066
Identities = 221/252 (87%)
Strand = Plus / Minus
Query: 380 gtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggcat 439
||||| ||| |||| ||||| ||||||||||||||||||||||||| | | || |||||
Sbjct: 463 gtagggcggcggcagcggcatgccgacgaccttgccgcagcggagggagttgtcgggcat 404
Query: 440 gttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgcc 499
||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||
Sbjct: 403 gttgtactcgtccctgagcgacctggccggcgaggtgcagctcacgtacagctgctcccc 344
Query: 500 gaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacgt 559
||||| | ||||||||| | ||||| | | | ||||||| || ||||||||||||||
Sbjct: 343 caggtagtacctctcccacagattggacctcaagttccacatcccggcgttgtcgaacgt 284
Query: 560 catcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgtc 619
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 283 cagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgtc 224
Query: 620 caggaggttgta 631
||||||||||||
Sbjct: 223 caggaggttgta 212
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctcgaag 737
|||||||||||||||||||||||||||
Sbjct: 132 tcgatgctcttctcggggttctcgaag 106
>gb|BJ252455.1|BJ252455 BJ252455 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf24h01 3', mRNA sequence
Length = 732
Score = 254 bits (128), Expect = 9e-066
Identities = 221/252 (87%)
Strand = Plus / Plus
Query: 380 gtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggcat 439
||||| ||| |||| ||||| ||||||||||||||||||||||||| | | || |||||
Sbjct: 392 gtagggcggcggcagcggcatgccgacgaccttgccgcagcggagggagttgtcgggcat 451
Query: 440 gttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgcc 499
||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||
Sbjct: 452 gttgtactcgtccctgagcgacctggccggcgaggtgcagctcacgtacagctgctcccc 511
Query: 500 gaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacgt 559
||||| | ||||||||| | ||||| | | | ||||||| || ||||||||||||||
Sbjct: 512 caggtagtacctctcccacagattggacctcaagttccacatcccggcgttgtcgaacgt 571
Query: 560 catcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgtc 619
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 572 cagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgtc 631
Query: 620 caggaggttgta 631
||||||||||||
Sbjct: 632 caggaggttgta 643
>emb|AJ577380.1|TAE577380 Triticum aestivum partial mRNA for putative L-ascorbate oxidase
homolog
Length = 506
Score = 254 bits (128), Expect = 9e-066
Identities = 221/252 (87%)
Strand = Plus / Minus
Query: 380 gtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggcat 439
||||| ||| |||| ||||| ||||||||||||||||||||||||| | | || |||||
Sbjct: 459 gtagggcggcggcagcggcatgccgacgaccttgccgcagcggagggcgttgtcgggcat 400
Query: 440 gttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgcc 499
||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||
Sbjct: 399 gttgtactcgtccctgagcgacctggccggcgaggtgcagctcacgtatagctgctcgcc 340
Query: 500 gaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacgt 559
||||| | ||||||||| | ||||| | | | ||||||| || ||||||||||||||
Sbjct: 339 caggtagtacctctcccacagattggacctcaagttccacatcccggcgttgtcgaacgt 280
Query: 560 catcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgtc 619
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 279 cagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgtc 220
Query: 620 caggaggttgta 631
||||||||||||
Sbjct: 219 caggaggttgta 208
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctc 733
|||||||||||||||||||||||
Sbjct: 128 tcgatgctcttctcggggttctc 106
>gb|BJ263952.1|BJ263952 BJ263952 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh7d03 3', mRNA sequence
Length = 694
Score = 246 bits (124), Expect = 2e-063
Identities = 220/252 (87%)
Strand = Plus / Plus
Query: 380 gtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggcat 439
||||| ||| |||| ||||| ||||||||||||||||||||||||| | || |||||
Sbjct: 390 gtagggcggcggcagcggcatgccgacgaccttgccgcagcggagggaattgtcgggcat 449
Query: 440 gttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgcc 499
||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||
Sbjct: 450 gttgtactcgtccctgagcgacctggccggcgaggtgcagctcacgtacagctgctcccc 509
Query: 500 gaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacgt 559
||||| | ||||||||| | ||||| | | | ||||||| || ||||||||||||||
Sbjct: 510 caggtagtacctctcccacagattggacctcaagttccacatcccggcgttgtcgaacgt 569
Query: 560 catcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgtc 619
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 570 cagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgtc 629
Query: 620 caggaggttgta 631
||||||||||||
Sbjct: 630 caggaggttgta 641
>gb|BJ254491.1|BJ254491 BJ254491 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf5n08 3', mRNA sequence
Length = 592
Score = 135 bits (68), Expect = 6e-030
Identities = 161/192 (83%)
Strand = Plus / Plus
Query: 380 gtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggcat 439
||||| ||| |||| ||||| ||||||||||||||||||||||||| | || |||||
Sbjct: 401 gtagggcggcggcagcggcatgccgacgaccttgccgcagcggagggaattgtcgggcat 460
Query: 440 gttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgcc 499
||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||
Sbjct: 461 gttgtactcgtccctgagcgacctggccggcgaggtgcagctcacgtacagctgctcccc 520
Query: 500 gaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacgt 559
||||| | ||||||||| | ||||| | | | ||||||| || ||||||||||||||
Sbjct: 521 caggtagtacctctcccacagattggacctcaagttccacatcccggcgttgtcgaacgt 580
Query: 560 catcatcaccgc 571
|| |||||||||
Sbjct: 581 cagcatcaccgc 592
>gb|BJ257358.1|BJ257358 BJ257358 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh10b24 5', mRNA sequence
Length = 684
Score = 111 bits (56), Expect = 9e-023
Identities = 116/136 (85%)
Strand = Plus / Minus
Query: 380 gtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggcat 439
||||| ||| |||| ||||| ||||||||||||||||||||||||| | || |||||
Sbjct: 374 gtagggcggcggcagcggcatgccgacgaccttgccgcagcggagggaattgtcgggcat 315
Query: 440 gttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgcc 499
||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||
Sbjct: 314 gttgtactcgtccctgagcgacctggccggcgaggtgcagctcacgtacagctgctcccc 255
Query: 500 gaggtactgcctctcc 515
||||| | |||||||
Sbjct: 254 caggtagtacctctcc 239
>gb|BJ262940.1|BJ262940 BJ262940 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh10b24 3', mRNA sequence
Length = 657
Score = 111 bits (56), Expect = 9e-023
Identities = 116/136 (85%)
Strand = Plus / Plus
Query: 380 gtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggcat 439
||||| ||| |||| ||||| ||||||||||||||||||||||||| | || |||||
Sbjct: 417 gtagggcggcggcagcggcatgccgacgaccttgccgcagcggagggaattgtcgggcat 476
Query: 440 gttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgcc 499
||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||
Sbjct: 477 gttgtactcgtccctgagcgacctggccggcgaggtgcagctcacgtacagctgctcccc 536
Query: 500 gaggtactgcctctcc 515
||||| | |||||||
Sbjct: 537 caggtagtacctctcc 552
>gb|CA593599.1|CA593599 wpa1c.pk002.n10 wpa1c Triticum aestivum cDNA clone wpa1c.pk002.n10
5' end, mRNA sequence
Length = 545
Score = 89.7 bits (45), Expect = 3e-016
Identities = 61/65 (93%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 567 accgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgtccaggagg 626
||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||
Sbjct: 301 accgccgtccacgacctcgg-tacacttgaatcgtgtgccggctcaccgtgtccaggagg 243
Query: 627 ttgta 631
|||||
Sbjct: 242 ttgta 238
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctc 733
|||||||||||||||||||||||
Sbjct: 158 tcgatgctcttctcggggttctc 136
>gb|BQ903982.1|BQ903982 Ta03_21e08_R
Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta03_21e08, mRNA
sequence
Length = 203
Score = 81.8 bits (41), Expect = 8e-014
Identities = 108/134 (80%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 648 gccgtccatttgccgggccccatgccgacggcgaaaaaggcntnnncntcgatgnngatg 707
|||||||| || || |||||||| ||||||||||| ||||| | | ||||| |||
Sbjct: 18 gccgtccacttccccggccccatcccgacggcgaagaaggcgtackcc-cgatgtgcatg 76
Query: 708 nnntcgatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcg 767
|| |||||||||||||||||||||||| | ||| ||||||| ||||||||||||
Sbjct: 77 gactccatgctcttctcggggttctcgaagacgacctcgatgaaggtgcggaactcggcg 136
Query: 768 ctgatgacgttggg 781
|||||||||||||
Sbjct: 137 gtgatgacgttggg 150
>gb|BI751763.1|BI751763 Ta01_12e06_R
Ta01_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta01_12e06, mRNA
sequence
Length = 246
Score = 77.8 bits (39), Expect = 1e-012
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 589 acacctggatcgtgtgccggctcaccgtgtccaggaggttgta 631
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 246 acacctggatggtgtgccggctcaccgtgtccaggaggttgta 204
Score = 50.1 bits (25), Expect = 3e-004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctcgaag 737
|||||||||||||||| ||||||||||
Sbjct: 124 tcgatgctcttctcggsgttctcgaag 98
>gb|BJ255233.1|BJ255233 BJ255233 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf8o07 3', mRNA sequence
Length = 614
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 480 ctcacgtacagctgctcgccgaggtactgcc 510
|||| ||||||||||| ||||||||||||||
Sbjct: 233 ctcaggtacagctgctggccgaggtactgcc 263
>gb|BJ322623.1|BJ322623 BJ322623 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf26e02 3', mRNA sequence
Length = 626
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 480 ctcacgtacagctgctcgccgaggtactgcc 510
|||| ||||||||||| ||||||||||||||
Sbjct: 300 ctcaggtacagctgctggccgaggtactgcc 330
>gb|CA640817.1|CA640817 wre1n.pk0020.f8 wre1n Triticum aestivum cDNA clone wre1n.pk0020.f8
5' end, mRNA sequence
Length = 431
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 480 ctcacgtacagctgctcgccgaggtactgcc 510
|||| ||||||||||| ||||||||||||||
Sbjct: 167 ctcaggtacagctgctggccgaggtactgcc 137
>gb|CK200779.1|CK200779 FGAS009296 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 847
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 480 ctcacgtacagctgctcgccgaggtactgcc 510
|||| ||||||||||| ||||||||||||||
Sbjct: 543 ctcaggtacagctgctggccgaggtactgcc 573
>gb|CA597345.1|CA597345 wpa1c.pk016.e13 wpa1c Triticum aestivum cDNA clone wpa1c.pk016.e13
5' end, mRNA sequence
Length = 533
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 435 ggcatgttgtactcgtccctg 455
|||||||||||||||||||||
Sbjct: 462 ggcatgttgtactcgtccctg 482
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 174,272
Number of Sequences: 636343
Number of extensions: 174272
Number of successful extensions: 50300
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50260
Number of HSP's gapped (non-prelim): 30
length of query: 910
length of database: 367,240,239
effective HSP length: 19
effective length of query: 891
effective length of database: 355,149,722
effective search space: 316438402302
effective search space used: 316438402302
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)