BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2253513.2.1
(746 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD894062.1|CD894062 G118.125E16F010828 G118 Triticum aes... 349 2e-094
gb|BU101055.1|BU101055 WHE3363_E07_I13ZS Chinese Spring alu... 307 6e-082
gb|CA631988.1|CA631988 wle1n.pk0050.d12 wle1n Triticum aest... 135 5e-030
gb|BJ291955.1|BJ291955 BJ291955 Y. Ogihara unpublished cDNA... 46 0.003
gb|BJ298566.1|BJ298566 BJ298566 Y. Ogihara unpublished cDNA... 46 0.003
gb|BQ161554.1|BQ161554 WHE1455_D11_G21ZT Wheat etiolated se... 46 0.003
gb|CD879801.1|CD879801 AZO4.106G09F011012 AZO4 Triticum aes... 46 0.003
gb|BE419385.1|BE419385 WWS01.D6R000101 ITEC WWS Wheat Scute... 42 0.054
gb|BJ215342.1|BJ215342 BJ215342 Y. Ogihara unpublished cDNA... 42 0.054
gb|BJ321656.1|BJ321656 BJ321656 Y. Ogihara unpublished cDNA... 42 0.054
gb|BQ171061.1|BQ171061 WHE2322_C04_E08ZT Wheat pre-anthesis... 42 0.054
gb|CK194696.1|CK194696 FGAS003127 Triticum aestivum FGAS: L... 42 0.054
gb|CK196137.1|CK196137 FGAS004584 Triticum aestivum FGAS: L... 42 0.054
gb|CA498138.1|CA498138 WHE3239_C01_F01ZT Wheat meiotic anth... 40 0.21
>gb|CD894062.1|CD894062 G118.125E16F010828 G118 Triticum aestivum cDNA clone G118125E16,
mRNA sequence
Length = 663
Score = 349 bits (176), Expect = 2e-094
Identities = 329/380 (86%)
Strand = Plus / Plus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| ||||| ||||| || || ||||| ||||| |||||| |||||||||||||||
Sbjct: 172 ctaatgcatgtggctgggcttatggcatgaacttctttgatcttaattcttggaggaggg 231
Query: 61 agaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatgga 120
|||||| ||| |||||||||||||| ||||||| ||||||||||||| || | ||||||
Sbjct: 232 agaaatctaccgagcagtaccattactggcagactcagaatgagaaccggctactatgga 291
Query: 121 agctaggaacgctgccccctggcttgatcactttctactcgacaacaaaacctctggaga 180
|| | ||||| ||||||| || || ||||| ||||||||||| ||||| |||||||| |
Sbjct: 292 agttgggaacattgcccccgggtttaatcacattctactcgaccacaaagcctctggaca 351
Query: 181 aatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattagaa 240
||||||||||||| || || || || ||||| || |||||||||||||||||||||||||
Sbjct: 352 aatcttggcatgtcctcggtctcgggtacaacccaagcatcagcatggaggagattagaa 411
Query: 241 atgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaacc 300
| |||||||||||||||||||| || ||||||||||| |||||||||| ||||||||||
Sbjct: 412 acgctgctgttgtgcatttcaatgggaacatgaagcctgggctggacattggtatgaacc 471
Query: 301 agttcaggcacctttggacaaagtatgtggactatgatgactcatatattcgtcaatgca 360
|||||||||| || |||||||| || ||||| || || ||||| | |||||||||||||
Sbjct: 472 agttcaggcaactctggacaaaatacgtggattacgacgactcgttcattcgtcaatgca 531
Query: 361 attttgcaccgccatagaag 380
|||||||||| |||||||||
Sbjct: 532 attttgcaccaccatagaag 551
>gb|BU101055.1|BU101055 WHE3363_E07_I13ZS Chinese Spring aluminum-stressed root tip cDNA
library Triticum aestivum cDNA clone WHE3363_E07_I13,
mRNA sequence
Length = 671
Score = 307 bits (155), Expect = 6e-082
Identities = 278/319 (87%)
Strand = Plus / Plus
Query: 62 gaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatggaa 121
||||| ||| |||||||||||||| ||||||| ||||||||||||| || |||||||||
Sbjct: 11 gaaatctaccgagcagtaccattactggcagactcagaatgagaaccggttattatggaa 70
Query: 122 gctaggaacgctgccccctggcttgatcactttctactcgacaacaaaacctctggagaa 181
| | ||||| ||||||| || || ||||| ||||||||||| ||||| ||||| | ||
Sbjct: 71 gttgggaacattgcccccaggtttaatcacattctactcgacgacaaagcctcttgccaa 130
Query: 182 atcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattagaaa 241
|||||||||||| ||||| || || || ||||| ||||||||||||||||||||||||||
Sbjct: 131 atcttggcatgtccttgggctcgggtataatccaagcatcagcatggaggagattagaaa 190
Query: 242 tgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaacca 301
|||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct: 191 cgctgctgttgtgcatttcaatgggaacatgaagccttggctggacattggtatgaacca 250
Query: 302 gttcaggcacctttggacaaagtatgtggactatgatgactcatatattcgtcaatgcaa 361
||||||||| || |||||||| || ||||| || || ||||| | ||||||||||||||
Sbjct: 251 gttcaggcagctctggacaaaatacgtggattacgacgactcgttcattcgtcaatgcaa 310
Query: 362 ttttgcaccgccatagaag 380
|||||||||||||||||||
Sbjct: 311 ttttgcaccgccatagaag 329
>gb|CA631988.1|CA631988 wle1n.pk0050.d12 wle1n Triticum aestivum cDNA clone
wle1n.pk0050.d12 5' end, mRNA sequence
Length = 591
Score = 135 bits (68), Expect = 5e-030
Identities = 136/157 (86%), Gaps = 2/157 (1%)
Strand = Plus / Minus
Query: 226 tggaggagattagaaatgct-gctgttgtgcattt-caacggcaacatgaagccctggct 283
||||||||||| |||| ||| |||||||||||||| ||| || ||||||||||| |||||
Sbjct: 446 tggaggagattngaaacgcttgctgttgtgcattttcaatgggaacatgaagccttggct 387
Query: 284 ggacatcggtatgaaccagttcaggcacctttggacaaagtatgtggactatgatgactc 343
|||| | ||| |||||||||||||||| || |||||||| || ||||| || || |||||
Sbjct: 386 ggacnttggtntgaaccagttcaggcaactctggacaaaatacgtggattacgacgactc 327
Query: 344 atatattcgtcaatgcaattttgcaccgccatagaag 380
| ||||||||||||||||||||||| |||||||||
Sbjct: 326 gttcattcgtcaatgcaattttgcaccaccatagaag 290
>gb|BJ291955.1|BJ291955 BJ291955 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl25k04 5', mRNA sequence
Length = 681
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 242 tgctgctgttgtgcatttcaacggcaacatgaagccctggctg 284
||||||||||||||||| || || |||||||| |||||||||
Sbjct: 396 tgctgctgttgtgcattataatgggaacatgaaaccctggctg 438
>gb|BJ298566.1|BJ298566 BJ298566 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl25k04 3', mRNA sequence
Length = 671
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 242 tgctgctgttgtgcatttcaacggcaacatgaagccctggctg 284
||||||||||||||||| || || |||||||| |||||||||
Sbjct: 631 tgctgctgttgtgcattataatgggaacatgaaaccctggctg 589
>gb|BQ161554.1|BQ161554 WHE1455_D11_G21ZT Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1455_D11_G21,
mRNA sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 242 tgctgctgttgtgcatttcaacggcaacatgaagccctggctg 284
||||||||||||||||| || || |||||||| |||||||||
Sbjct: 520 tgctgctgttgtgcattataatgggaacatgaaaccctggctg 478
>gb|CD879801.1|CD879801 AZO4.106G09F011012 AZO4 Triticum aestivum cDNA clone AZO4106G09,
mRNA sequence
Length = 757
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 242 tgctgctgttgtgcatttcaacggcaacatgaagccctggctg 284
||||||||||||||||| || || |||||||| |||||||||
Sbjct: 594 tgctgctgttgtgcattataatgggaacatgaaaccctggctg 636
>gb|BE419385.1|BE419385 WWS01.D6R000101 ITEC WWS Wheat Scutellum Library Triticum aestivum
cDNA clone WWS01.D6, mRNA sequence
Length = 331
Score = 42.1 bits (21), Expect = 0.054
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 255 catttcaacggcaacatgaagccctggct 283
|||| ||| ||||||||||||||||||||
Sbjct: 19 cattacaatggcaacatgaagccctggct 47
>gb|BJ215342.1|BJ215342 BJ215342 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh6k21 3', mRNA sequence
Length = 625
Score = 42.1 bits (21), Expect = 0.054
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 255 catttcaacggcaacatgaagccctggct 283
|||| ||| ||||||||||||||||||||
Sbjct: 260 cattacaatggcaacatgaagccctggct 232
>gb|BJ321656.1|BJ321656 BJ321656 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf21m18 3', mRNA sequence
Length = 636
Score = 42.1 bits (21), Expect = 0.054
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 255 catttcaacggcaacatgaagccctggct 283
|||| ||| ||||||||||||||||||||
Sbjct: 440 cattacaatggcaacatgaagccctggct 412
>gb|BQ171061.1|BQ171061 WHE2322_C04_E08ZT Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2322_C04_E08, mRNA sequence
Length = 516
Score = 42.1 bits (21), Expect = 0.054
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 255 catttcaacggcaacatgaagccctggct 283
|||| ||| ||||||||||||||||||||
Sbjct: 466 cattacaatggcaacatgaagccctggct 438
>gb|CK194696.1|CK194696 FGAS003127 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 804
Score = 42.1 bits (21), Expect = 0.054
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 255 catttcaacggcaacatgaagccctggct 283
|||| ||| ||||||||||||||||||||
Sbjct: 610 cattacaatggcaacatgaagccctggct 638
>gb|CK196137.1|CK196137 FGAS004584 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 868
Score = 42.1 bits (21), Expect = 0.054
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 255 catttcaacggcaacatgaagccctggct 283
|||| ||| ||||||||||||||||||||
Sbjct: 538 cattacaatggcaacatgaagccctggct 566
>gb|CA498138.1|CA498138 WHE3239_C01_F01ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3239_C01_F01, mRNA sequence
Length = 710
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1 ctaatgcctgtggatgggcatacggaatgaat 32
||||||| ||||||||||| || |||||||||
Sbjct: 129 ctaatgcatgtggatgggcttatggaatgaat 160
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112,988
Number of Sequences: 636343
Number of extensions: 112988
Number of successful extensions: 29452
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29431
Number of HSP's gapped (non-prelim): 19
length of query: 746
length of database: 367,240,239
effective HSP length: 19
effective length of query: 727
effective length of database: 355,149,722
effective search space: 258193847894
effective search space used: 258193847894
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)