BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192420.2.1
(738 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK208629.1|CK208629 FGAS020343 Triticum aestivum FGAS: L... 355 3e-096
gb|BJ270333.1|BJ270333 BJ270333 Y. Ogihara unpublished cDNA... 335 3e-090
gb|BJ307953.1|BJ307953 BJ307953 Y. Ogihara unpublished cDNA... 311 4e-083
gb|CD869677.1|CD869677 AZO2.112E19R010402 AZO2 Triticum aes... 280 1e-073
gb|BJ273118.1|BJ273118 BJ273118 Y. Ogihara unpublished cDNA... 276 2e-072
gb|BJ270319.1|BJ270319 BJ270319 Y. Ogihara unpublished cDNA... 224 7e-057
gb|BJ286204.1|BJ286204 BJ286204 Y. Ogihara unpublished cDNA... 210 1e-052
gb|CD886188.1|CD886188 G118.101J11R010921 G118 Triticum aes... 188 4e-046
gb|BJ275319.1|BJ275319 BJ275319 Y. Ogihara unpublished cDNA... 143 2e-032
gb|CA500424.1|CA500424 WHE4019_D02_H03ZT Wheat meiotic anth... 42 0.053
>gb|CK208629.1|CK208629 FGAS020343 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1141
Score = 355 bits (179), Expect = 3e-096
Identities = 359/419 (85%)
Strand = Plus / Plus
Query: 10 aaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgagg 69
|||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||
Sbjct: 139 aaaattgttatggttctggcagctaccaactttccatgggatattgatgaagcactcagg 198
Query: 70 cgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcactt 129
|| |||||||| |||||||| ||||||||||||||| ||||||||| |||||| ||||
Sbjct: 199 cggaggctggaaaagcgtatctatattccacttccaagttttgaaagcagaaagtcactc 258
Query: 130 atcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgct 189
|||| ||| ||||||||||| ||| || |||| | ||||||||||||||||| |||||
Sbjct: 259 atcagcataaatcttagaacggttgaggtagctactgatgttaacatcgacgaagttgca 318
Query: 190 cggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaatg 249
|| ||||||||||| |||||||| ||||| |||||||| || || || ||||| ||||||
Sbjct: 319 cgaaggacagaagggtatagtggggatgacctgacaaatgtctgtcgtgatgcttcaatg 378
Query: 250 aatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaag 309
||||| |||||||| ||||| |||||||||||||| || |||||||||||||||||||||
Sbjct: 379 aatggtatgaggcgaaagattgcaggcaagacccgtgatgagatcaagaacatgtcaaag 438
Query: 310 gacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaaggtt 369
|| || || | ||||||||||| |||||||| ||||||| || ||| |||| |||||
Sbjct: 439 gatgatatctcaaaggacccggtagccatgtgtgactttgaagaagctttggtcaaggtc 498
Query: 370 cagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagtttgg 428
||||||||||| ||||| || || || || ||| |||||||||||||| ||||||||
Sbjct: 499 cagaagagtgtgtcgccctctgatatcgaacggcacgagaagtggatggccgagtttgg 557
>gb|BJ270333.1|BJ270333 BJ270333 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh7b13 5', mRNA sequence
Length = 657
Score = 335 bits (169), Expect = 3e-090
Identities = 361/425 (84%)
Strand = Plus / Plus
Query: 10 aaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgagg 69
|||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||
Sbjct: 149 aaaattgttatggttctggcagctaccaactttccatgggatattgatgaagcactcagg 208
Query: 70 cgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcactt 129
|| |||||||| |||||||| || |||||||||||| ||||||||| ||||| ||||
Sbjct: 209 cggaggctggaaaagcgtatctacattccacttccaagttttgaaagcagaaaatcactc 268
Query: 130 atcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgct 189
|||| ||| ||||||||||| ||| || |||| | || |||||||||||||| || ||
Sbjct: 269 atcagcataaatcttagaacggttgaggtagctactgacgttaacatcgacgaagtcgca 328
Query: 190 cggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaatg 249
|| ||||||||||| |||||||| ||||| |||||||| |||||||| ||||| || |||
Sbjct: 329 cgaaggacagaagggtatagtggggatgacctgacaaatgtttgccgtgatgcttcgatg 388
Query: 250 aatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaag 309
||||| |||||||| ||||| |||||||||||||| || |||||||||||||||||||||
Sbjct: 389 aatggtatgaggcgaaagattgcaggcaagacccgtgatgagatcaagaacatgtcaaag 448
Query: 310 gacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaaggtt 369
|| || || | ||||||||||| |||||||| ||||||| || ||| |||| |||||
Sbjct: 449 gatgatatctcaaaggacccggtagccatgtgtgactttgaagaagctttggtcaaggtc 508
Query: 370 cagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagtttggg 429
||||||||||| ||||| || || || || ||| |||||||||||||| ||||||||
Sbjct: 509 cagaagagtgtgtcgccctctgatatcgaacggcacgagaagtggatggccgagtttgga 568
Query: 430 tctgc 434
|||||
Sbjct: 569 tctgc 573
>gb|BJ307953.1|BJ307953 BJ307953 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd13m08 3', mRNA sequence
Length = 703
Score = 311 bits (157), Expect = 4e-083
Identities = 358/425 (84%)
Strand = Plus / Minus
Query: 10 aaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgagg 69
|||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||
Sbjct: 659 aaaattgttatggttctggcagctacgaactttccatgggatattgatgaagcactcagg 600
Query: 70 cgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcactt 129
|| ||| |||| |||||||| |||||||||||||| ||||||||| |||||| ||||
Sbjct: 599 cggaggttggaaaagcgtatctatattccacttcctagttttgaaagcagaaagtcactc 540
Query: 130 atcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgct 189
|||| ||| ||||||||||| ||| || |||| | || ||||| |||||||| || ||
Sbjct: 539 atcagcataaatcttagaacggttgaggtagctactgacgttaatatcgacgaagtcgca 480
Query: 190 cggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaatg 249
|| ||||||||||| |||||||| ||||| |||||||| ||||| || ||||| || |||
Sbjct: 479 cgaaggacagaagggtatagtggggatgacctgacaaatgtttgtcgtgatgcttcgatg 420
Query: 250 aatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaag 309
||||| |||||||| ||||| |||||||||||||| || |||||||||||||||||||||
Sbjct: 419 aatggtatgaggcgaaagattgcaggcaagacccgtgatgagatcaagaacatgtcaaag 360
Query: 310 gacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaaggtt 369
|| || || | ||||||||||| |||||||| ||||||| || ||| |||| |||||
Sbjct: 359 gatgatatctcaaaggacccggtagccatgtgtgactttgaagaagctttggtcaaggtc 300
Query: 370 cagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagtttggg 429
||||||||||| ||||| || || || || || |||||||||||||| ||||||||
Sbjct: 299 cagaagagtgtgtcgccctctgatattgaacgtcacgagaagtggatggccgagtttgga 240
Query: 430 tctgc 434
|||||
Sbjct: 239 tctgc 235
>gb|CD869677.1|CD869677 AZO2.112E19R010402 AZO2 Triticum aestivum cDNA clone AZO2112E19,
mRNA sequence
Length = 613
Score = 280 bits (141), Expect = 1e-073
Identities = 318/377 (84%)
Strand = Plus / Minus
Query: 52 attgatgaggcactgaggcgaaggctggagaagcgtatttatattccacttccagatttt 111
|||||||| ||||| ||||| |||||||| |||||||| ||||||||||||||| ||||
Sbjct: 613 attgatgaagcactcaggcggaggctggaaaagcgtatctatattccacttccaagtttt 554
Query: 112 gaaagtagaaaggcacttatcaacattaatcttagaacagttcagatagccgcagatgtt 171
||||| |||||| |||| |||| ||| ||||||||||| || || |||| | ||||||
Sbjct: 553 gaaagcagaaagtcactgatcagcataaatcttagaacgcttgaggtagctactgatgtt 494
Query: 172 aacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgacaaacgtt 231
||||||||||| |||| || ||||||||||| |||||||| ||||| |||||||| ||
Sbjct: 493 aacatcgacgaatttgcacgaaggacagaagggtatagtggggatgacctgacaaatgtc 434
Query: 232 tgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgcgacgag 291
|| || ||||| ||||||||||| |||||||| ||||| |||||||||||||| || |||
Sbjct: 433 tgtcgtgatgcttcaatgaatggtatgaggcgaaagattgcaggcaagacccgtgatgag 374
Query: 292 atcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgactttgtg 351
|||||||||||||||||||| || || | ||||||||||| |||||||| |||||||
Sbjct: 373 atcaagaacatgtcaaaggatgatatctcaaaggacccggtagccatgtgtgactttgaa 314
Query: 352 gaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcatgagaag 411
|| ||| |||| ||||| ||||||||||| ||||| || || || || ||| ||||||
Sbjct: 313 gaagctttggtcaaggtccagaagagtgtgtcgccctctgatatcgaacggcacgagaag 254
Query: 412 tggatggctgagtttgg 428
|||||||| ||||||||
Sbjct: 253 tggatggccgagtttgg 237
>gb|BJ273118.1|BJ273118 BJ273118 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh15k13 3', mRNA sequence
Length = 608
Score = 276 bits (139), Expect = 2e-072
Identities = 331/395 (83%)
Strand = Plus / Minus
Query: 40 tttccatgggatattgatgaggcactgaggcgaaggctggagaagcgtatttatattcca 99
|||||||||||||||||||| ||||| ||||| ||| |||| |||||||| |||||||||
Sbjct: 605 tttccatgggatattgatgaagcactcaggcggaggttggaaaagcgtatctatattcca 546
Query: 100 cttccagattttgaaagtagaaaggcacttatcaacattaatcttagaacagttcagata 159
||||| ||||||||| |||||| |||| |||| ||| ||||||||||| ||| || ||
Sbjct: 545 cttcctagttttgaaagcagaaagtcactcatcagcataaatcttagaacggttgaggta 486
Query: 160 gccgcagatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgat 219
|| | || ||||| |||||||| || || || ||||||||||| |||||||| |||||
Sbjct: 485 gctactgacgttaatatcgacgaagtcgcacgaaggacagaagggtatagtggggatgac 426
Query: 220 ctgacaaacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaag 279
|||||||| ||||| || ||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 425 ctgacaaatgtttgtcgtgatgcttcgatgaatggtatgaggcgaaagattgcaggcaag 366
Query: 280 acccgcgacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatg 339
||||| || ||||||||||||||||||||||| || || | ||||||||||| ||||||
Sbjct: 365 acccgtgatgagatcaagaacatgtcaaaggatgatatctcaaaggacccggtagccatg 306
Query: 340 tgcgactttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagag 399
|| ||||||| || ||| |||| ||||| ||||||||||| ||||| || || || ||
Sbjct: 305 tgtgactttgaagaagctttggtcaaggtccagaagagtgtgtcgccctctgatattgaa 246
Query: 400 aagcatgagaagtggatggctgagtttgggtctgc 434
|| |||||||||||||| |||||||| |||||
Sbjct: 245 cgtcacgagaagtggatggccgagtttggatctgc 211
>gb|BJ270319.1|BJ270319 BJ270319 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh7a13 5', mRNA sequence
Length = 424
Score = 224 bits (113), Expect = 7e-057
Identities = 243/287 (84%), Gaps = 1/287 (0%)
Strand = Plus / Plus
Query: 10 aaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgagg 69
|||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||
Sbjct: 138 aaaattgttatggttctggcagctaccaactttccatgggatattgatgaagcactcagg 197
Query: 70 cgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcactt 129
|| |||||||| |||||||| || |||||||||||| ||||||||| ||||| ||||
Sbjct: 198 cggaggctggaaaagcgtatctacattccacttccaagttttgaaagcagaaaatcactc 257
Query: 130 atcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgct 189
|||| ||| ||||||||||| | | || |||| | || |||||||||||||| || ||
Sbjct: 258 atcagcataaatcttagaacggntgaggtagctactgacgttaacatcgacgaagtcgca 317
Query: 190 cggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaatg 249
|| ||||||||||| ||||| || ||||| |||||||| |||||||| ||||| || |||
Sbjct: 318 cgaaggacagaagggtatagnggggatgacctgacaaatgtttgccgtgatgcttcnatg 377
Query: 250 aat-ggcatgaggcgcaagatagcaggcaagacccgcgacgagatca 295
||| || |||||||| ||||| |||||| ||||||| || |||||||
Sbjct: 378 aatgggnatgaggcgaaagattgcaggcnagacccgngatgagatca 424
>gb|BJ286204.1|BJ286204 BJ286204 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr19l10 3', mRNA sequence
Length = 473
Score = 210 bits (106), Expect = 1e-052
Identities = 223/262 (85%)
Strand = Plus / Minus
Query: 167 atgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgacaa 226
|||||||||||||||| ||||| || ||||||||||| |||||||| ||||| |||||||
Sbjct: 473 atgttaacatcgacgaagttgcacgaaggacagaagggtatagtggggatgacctgacaa 414
Query: 227 acgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgcg 286
| || || || ||||| ||||||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 413 atgtctgtcgtgatgcttcaatgaatggtatgaggcgaaagattgcaggcaagacccgtg 354
Query: 287 acgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgact 346
| ||||||||||||||||||||||| || || | ||||||||||| |||||||| ||||
Sbjct: 353 atgagatcaagaacatgtcaaaggatgatatctcaaaggacccggtagccatgtgtgact 294
Query: 347 ttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcatg 406
||| || ||| |||| ||||| ||||||||||| ||||| || || || || ||| |
Sbjct: 293 ttgaagaagctttggtcaaggtccagaagagtgtgtcgccctctgatatcgaacggcacg 234
Query: 407 agaagtggatggctgagtttgg 428
||||||||||||| ||||||||
Sbjct: 233 agaagtggatggccgagtttgg 212
>gb|CD886188.1|CD886188 G118.101J11R010921 G118 Triticum aestivum cDNA clone G118101J11,
mRNA sequence
Length = 518
Score = 188 bits (95), Expect = 4e-046
Identities = 221/263 (84%)
Strand = Plus / Minus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
||||||||||||||||| ||||| || ||||||||||| |||||||| ||||| |||||
Sbjct: 517 gatgttaacatcgacgaagttgcccgaaggacagaagggtatagtggggatgacctgacc 458
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
|| || || || ||||| ||||||||||| |||||||| ||||| |||||| |||||||
Sbjct: 457 aatgtctgtcgtgatgcttcaatgaatggtatgaggcgaaagattgcaggccagacccgt 398
Query: 286 gacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgac 345
|| ||||||||||||||||||||||| || || | ||||||||||| |||||||| |||
Sbjct: 397 gatgagatcaagaacatgtcaaaggatgatatctcaaaggacccggtagccatgtgtgac 338
Query: 346 tttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcat 405
|||| || ||| |||| |||| ||||||||||| ||||| || || || || |||
Sbjct: 337 tttgaagaagctttggtccaggtccagaagagtgtgtcgccctctgatatcgaacggcac 278
Query: 406 gagaagtggatggctgagtttgg 428
|||||||||||||| ||||||||
Sbjct: 277 gagaagtggatggccgagtttgg 255
>gb|BJ275319.1|BJ275319 BJ275319 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh7a13 3', mRNA sequence
Length = 469
Score = 143 bits (72), Expect = 2e-032
Identities = 159/188 (84%)
Strand = Plus / Minus
Query: 247 atgaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtca 306
|||||||| |||||||| ||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 467 atgaatggtatgaggcgaaagattgcaggcaagacccgtgatgagatcaagaacatgtca 408
Query: 307 aaggacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaag 366
||||| || || | ||||||||||| |||||||| ||||||| || ||| |||| |||
Sbjct: 407 aaggatgatatctcaaaggacccggtagccatgtgtgactttgaagaagctttggtcaag 348
Query: 367 gttcagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagttt 426
|| ||||||||||| ||||| || || || || ||| |||||||||||||| ||||||
Sbjct: 347 gtccagaagagtgtgtcgccctctgatatcgaacggcacgagaagtggatggccgagttt 288
Query: 427 gggtctgc 434
|| |||||
Sbjct: 287 ggatctgc 280
>gb|CA500424.1|CA500424 WHE4019_D02_H03ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4019_D02_H03, mRNA sequence
Length = 416
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 406 gagaagtggatggctgagtttgggtctgc 434
|||||||||||||| |||||||| |||||
Sbjct: 375 gagaagtggatggccgagtttggatctgc 347
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 129,205
Number of Sequences: 636343
Number of extensions: 129205
Number of successful extensions: 34934
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34909
Number of HSP's gapped (non-prelim): 16
length of query: 738
length of database: 367,240,239
effective HSP length: 19
effective length of query: 719
effective length of database: 355,149,722
effective search space: 255352650118
effective search space used: 255352650118
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)