BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716352.2.1
(990 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA624569.1|CA624569 wl1n.pk0120.f2 wl1n Triticum aestivu... 519 e-145
gb|CA484663.1|CA484663 WHE4309_C02_E03ZS Wheat meiotic anth... 379 e-103
gb|BF474509.1|BF474509 WHE0844_H06_P12ZS Wheat vernalized c... 52 7e-005
gb|AL819328.1|AL819328 AL819328 n:129 Triticum aestivum cDN... 52 7e-005
gb|AL820030.1|AL820030 AL820030 N:130 Triticum aestivum cDN... 52 7e-005
gb|BQ837997.1|BQ837997 WHE2905_D04_G07ZS Wheat aluminum-str... 52 7e-005
gb|BJ220682.1|BJ220682 BJ220682 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ224020.1|BJ224020 BJ224020 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ225623.1|BJ225623 BJ225623 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ226247.1|BJ226247 BJ226247 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ226784.1|BJ226784 BJ226784 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ230518.1|BJ230518 BJ230518 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ231156.1|BJ231156 BJ231156 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ231711.1|BJ231711 BJ231711 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ233264.1|BJ233264 BJ233264 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ238912.1|BJ238912 BJ238912 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ269248.1|BJ269248 BJ269248 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ274195.1|BJ274195 BJ274195 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ294093.1|BJ294093 BJ294093 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ304232.1|BJ304232 BJ304232 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ304793.1|BJ304793 BJ304793 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ310635.1|BJ310635 BJ310635 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ317091.1|BJ317091 BJ317091 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ320107.1|BJ320107 BJ320107 Y. Ogihara unpublished cDNA... 52 7e-005
gb|BJ322632.1|BJ322632 BJ322632 Y. Ogihara unpublished cDNA... 52 7e-005
gb|CA740180.1|CA740180 wet2s.pk001.d5 wet2s Triticum aestiv... 52 7e-005
gb|CA740723.1|CA740723 wet2s.pk004.c16 wet2s Triticum aesti... 52 7e-005
gb|CA740846.1|CA740846 wet2s.pk004.b13 wet2s Triticum aesti... 52 7e-005
gb|CA740908.1|CA740908 wet2s.pk004.p24 wet2s Triticum aesti... 52 7e-005
gb|CD926703.1|CD926703 GR45.001N04F001020 GR45 Triticum aes... 52 7e-005
gb|CK166046.1|CK166046 FGAS050097 Triticum aestivum FGAS: T... 52 7e-005
gb|CK210715.1|CK210715 FGAS022541 Triticum aestivum FGAS: L... 52 7e-005
gb|CK213012.1|CK213012 FGAS024911 Triticum aestivum FGAS: L... 52 7e-005
gb|AJ613925.1|AJ613925 AJ613925 Triticum turgidum subsp. du... 52 7e-005
gb|CV771540.1|CV771540 FGAS065933 Triticum aestivum FGAS: L... 52 7e-005
gb|DR741657.1|DR741657 FGAS030709 Triticum aestivum FGAS: L... 52 7e-005
gb|DR741917.1|DR741917 FGAS030959 Triticum aestivum FGAS: L... 52 7e-005
gb|BE418343.1|BE418343 SCL031.C03R990601 ITEC SCL Wheat Lea... 46 0.005
gb|BJ228742.1|BJ228742 BJ228742 Y. Ogihara unpublished cDNA... 46 0.005
gb|BJ231175.1|BJ231175 BJ231175 Y. Ogihara unpublished cDNA... 44 0.018
gb|BJ273049.1|BJ273049 BJ273049 Y. Ogihara unpublished cDNA... 44 0.018
gb|CA622418.1|CA622418 wl1n.pk0095.h1 wl1n Triticum aestivu... 44 0.018
gb|CA725166.1|CA725166 wds3f.pk003.c14 wds3f Triticum aesti... 44 0.018
gb|BJ212592.1|BJ212592 BJ212592 Y. Ogihara unpublished cDNA... 40 0.28
gb|AL819608.1|AL819608 AL819608 n:129 Triticum aestivum cDN... 40 0.28
>gb|CA624569.1|CA624569 wl1n.pk0120.f2 wl1n Triticum aestivum cDNA clone wl1n.pk0120.f2 5'
end, mRNA sequence
Length = 299
Score = 519 bits (262), Expect = e-145
Identities = 262/262 (100%)
Strand = Plus / Minus
Query: 39 caagcaaatacttcatgtggtagtcctgtattcactcaatgggaatagatgcgtcttgca 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 caagcaaatacttcatgtggtagtcctgtattcactcaatgggaatagatgcgtcttgca 228
Query: 99 tttgcacttctcgaaggaaccaaaaccaatacgtaatattctgcatctaggagttccaac 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tttgcacttctcgaaggaaccaaaaccaatacgtaatattctgcatctaggagttccaac 168
Query: 159 aattcagcataacacgaatagcaaaacctgacaatgcttaacataaaacgtcataccaag 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aattcagcataacacgaatagcaaaacctgacaatgcttaacataaaacgtcataccaag 108
Query: 219 tcctaaagttcattatttcaaatatcttggttgataatgcacttaataggatcctgcccc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tcctaaagttcattatttcaaatatcttggttgataatgcacttaataggatcctgcccc 48
Query: 279 cctcaagcatcatagctttggc 300
||||||||||||||||||||||
Sbjct: 47 cctcaagcatcatagctttggc 26
>gb|CA484663.1|CA484663 WHE4309_C02_E03ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4309_C02_E03, mRNA sequence
Length = 729
Score = 379 bits (191), Expect = e-103
Identities = 336/383 (87%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 391 ggttcccagcaggtctctcattagccatgttgacacgtacctgccgcccatcaatttcct 450
||||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||||
Sbjct: 427 ggttccctgcaggtctgtcgttagcaatgttgacacgtacgggccgcccatcaatttcct 368
Query: 451 tgccatccattgcagaaatagcttccttggcagcatcactgtcggagtagttcacaaagc 510
||||||||||| |||| |||||| | ||||||||||||||| || |||||| |||||||
Sbjct: 367 tgccatccattccagatatagctgcattggcagcatcactgctggtgtagttaacaaagc 308
Query: 511 caaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagtaacctctc 570
|||| ||||||||| ||||||| |||||||| |||||||| | |||||||||||| ||||
Sbjct: 307 caaatcctcttgacttcccagtgtccctgtccgtgatcactcgcgcttcagtaacatctc 248
Query: 571 caaagctgctaaatgcttctcttagtttcacgtcatcaacaccccagtcaagaccaccaa 630
|||||| ||||| || ||||| ||||||| ||||||||||||||| |||||||||||
Sbjct: 247 caaagccactaaacgcctctctcagtttcatgtcatcaacaccccatgaaagaccaccaa 188
Query: 631 taaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaagagccaccag 690
||||||||||| ||||||||||| |||||||||||||| |||||||| |||| | |||
Sbjct: 187 cgaatagcttggtggacatgagccgagcagcattgaacacagcaggagacgagctagcag 128
Query: 691 tgataccgctcaccagagcactgtgccttagaaggccaccaagcttgttgaaggccgcca 750
|| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 127 cgacaccgctcgccagagcactgtgccttagaaggctgccaagcttgttgaaggccgcca 68
Query: 751 ttgcg-aacactaaacctgaggg 772
|| |||||||||||||||||
Sbjct: 67 ttttttaacactaaacctgaggg 45
Score = 73.8 bits (37), Expect = 2e-011
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 626 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 568
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 567 aagccc-catgccaggtcctaaagttcattatttcaaatatcttg 524
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 65 tgtattcactcaatgggaatagatgcgtcttgcatttgcacttctcgaaggaaccaaaac 124
||||| ||||||| | |||| ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 720 tgtatccactcaacagaaatacatgcgacttgcatttgcacttaacgaagcaaccaaaac 661
Query: 125 caata 129
|||||
Sbjct: 660 caata 656
>gb|BF474509.1|BF474509 WHE0844_H06_P12ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0844_H06_P12, mRNA sequence
Length = 410
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 229 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 184
>gb|AL819328.1|AL819328 AL819328 n:129 Triticum aestivum cDNA clone G08_n129_plate_18, mRNA
sequence
Length = 437
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 322 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 277
>gb|AL820030.1|AL820030 AL820030 N:130 Triticum aestivum cDNA clone E12_N130_plate_15, mRNA
sequence
Length = 663
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 320 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 275
>gb|BQ837997.1|BQ837997 WHE2905_D04_G07ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2905_D04_G07, mRNA
sequence
Length = 730
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 323 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 278
>gb|BJ220682.1|BJ220682 BJ220682 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh21e19 3', mRNA sequence
Length = 470
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 364 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 409
>gb|BJ224020.1|BJ224020 BJ224020 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl7o14 5', mRNA sequence
Length = 499
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 344 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 299
>gb|BJ225623.1|BJ225623 BJ225623 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl23a21 5', mRNA sequence
Length = 553
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 327 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 282
>gb|BJ226247.1|BJ226247 BJ226247 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl25k23 5', mRNA sequence
Length = 546
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 314 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 269
>gb|BJ226784.1|BJ226784 BJ226784 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl18o22 5', mRNA sequence
Length = 646
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 322 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 277
>gb|BJ230518.1|BJ230518 BJ230518 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl23a21 3', mRNA sequence
Length = 708
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 498 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 543
>gb|BJ231156.1|BJ231156 BJ231156 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl25k23 3', mRNA sequence
Length = 650
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 533 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 578
>gb|BJ231711.1|BJ231711 BJ231711 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl18o22 3', mRNA sequence
Length = 636
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 521 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 566
>gb|BJ233264.1|BJ233264 BJ233264 Y. Ogihara unpublished cDNA library, Wh_e Triticum
aestivum cDNA clone whe3o21 5', mRNA sequence
Length = 659
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 304 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 259
>gb|BJ238912.1|BJ238912 BJ238912 Y. Ogihara unpublished cDNA library, Wh_e Triticum
aestivum cDNA clone whe3o21 3', mRNA sequence
Length = 717
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 483 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 528
>gb|BJ269248.1|BJ269248 BJ269248 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh21b24 5', mRNA sequence
Length = 502
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 271 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 226
>gb|BJ274195.1|BJ274195 BJ274195 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh21b24 3', mRNA sequence
Length = 740
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 520 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 565
>gb|BJ294093.1|BJ294093 BJ294093 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl10o16 3', mRNA sequence
Length = 719
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 518 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 563
>gb|BJ304232.1|BJ304232 BJ304232 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd23c07 5', mRNA sequence
Length = 453
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 354 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 309
>gb|BJ304793.1|BJ304793 BJ304793 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd8c11 5', mRNA sequence
Length = 670
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 314 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 269
>gb|BJ310635.1|BJ310635 BJ310635 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd8c11 3', mRNA sequence
Length = 703
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 481 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 526
>gb|BJ317091.1|BJ317091 BJ317091 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf26e15 5', mRNA sequence
Length = 571
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 319 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 274
>gb|BJ320107.1|BJ320107 BJ320107 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf13i05 3', mRNA sequence
Length = 281
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 95 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 140
>gb|BJ322632.1|BJ322632 BJ322632 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf26e15 3', mRNA sequence
Length = 663
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 598 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 643
>gb|CA740180.1|CA740180 wet2s.pk001.d5 wet2s Triticum aestivum cDNA clone wet2s.pk001.d5 5'
end, mRNA sequence
Length = 275
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 205 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 250
>gb|CA740723.1|CA740723 wet2s.pk004.c16 wet2s Triticum aestivum cDNA clone wet2s.pk004.c16
5' end, mRNA sequence
Length = 275
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 205 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 250
>gb|CA740846.1|CA740846 wet2s.pk004.b13 wet2s Triticum aestivum cDNA clone wet2s.pk004.b13
5' end, mRNA sequence
Length = 275
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 205 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 250
>gb|CA740908.1|CA740908 wet2s.pk004.p24 wet2s Triticum aestivum cDNA clone wet2s.pk004.p24
5' end, mRNA sequence
Length = 275
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 205 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 250
>gb|CD926703.1|CD926703 GR45.001N04F001020 GR45 Triticum aestivum cDNA clone GR45001N04,
mRNA sequence
Length = 523
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 318 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 273
>gb|CK166046.1|CK166046 FGAS050097 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
mRNA sequence
Length = 1155
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 552 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 597
>gb|CK210715.1|CK210715 FGAS022541 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1105
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 348 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 303
>gb|CK213012.1|CK213012 FGAS024911 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1043
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 424 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 469
>gb|AJ613925.1|AJ613925 AJ613925 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 09487R, mRNA
sequence
Length = 350
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 101 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 56
>gb|CV771540.1|CV771540 FGAS065933 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 871
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 414 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 369
>gb|DR741657.1|DR741657 FGAS030709 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1048
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 331 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 286
>gb|DR741917.1|DR741917 FGAS030959 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1013
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 332 tcacaaaaccaaaccctctagaccttccagtctccctgtcagtgat 287
>gb|BE418343.1|BE418343 SCL031.C03R990601 ITEC SCL Wheat Leaf Library Triticum aestivum
cDNA clone SCL031.C03, mRNA sequence
Length = 427
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 505 caaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
|||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 323 caaaaccaaaccctctagaccttccagtctccctgtcagtgat 281
>gb|BJ228742.1|BJ228742 BJ228742 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl7o14 3', mRNA sequence
Length = 628
Score = 46.1 bits (23), Expect = 0.005
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttgacctcccagtctccctgtctgtgat 547
||||||| ||||| ||||| ||||| ||||||||||||| |||||
Sbjct: 542 tcacaaaaccaaaccctctagaccttncagtctccctgtcagtgat 587
>gb|BJ231175.1|BJ231175 BJ231175 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl25m06 3', mRNA sequence
Length = 674
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 304 acaaaaccaaatccccttgacctcccactctccctgtc 341
>gb|BJ273049.1|BJ273049 BJ273049 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh15e20 3', mRNA sequence
Length = 661
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 324 acaaaaccaaatccccttgacctcccactctccctgtc 361
>gb|CA622418.1|CA622418 wl1n.pk0095.h1 wl1n Triticum aestivum cDNA clone wl1n.pk0095.h1 5'
end, mRNA sequence
Length = 651
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 199 acaaaaccaaatccccttgacctcccactctccctgtc 162
>gb|CA725166.1|CA725166 wds3f.pk003.c14 wds3f Triticum aestivum cDNA clone wds3f.pk003.c14
5' end, mRNA sequence
Length = 436
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 152 acaaaaccaaatccccttgacctcccactctccctgtc 115
>gb|BJ212592.1|BJ212592 BJ212592 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh18c18 5', mRNA sequence
Length = 452
Score = 40.1 bits (20), Expect = 0.28
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccag 531
||||| ||||||||||||||||| ||||
Sbjct: 258 acaaaaccaaagcctcttgaccttccag 231
>gb|AL819608.1|AL819608 AL819608 n:129 Triticum aestivum cDNA clone F03_n129_plate_12, mRNA
sequence
Length = 311
Score = 40.1 bits (20), Expect = 0.28
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccag 531
||||| ||||||||||||||||| ||||
Sbjct: 162 acaaaaccaaagcctcttgaccttccag 135
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 165,043
Number of Sequences: 636343
Number of extensions: 165043
Number of successful extensions: 49436
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49375
Number of HSP's gapped (non-prelim): 61
length of query: 990
length of database: 367,240,239
effective HSP length: 20
effective length of query: 970
effective length of database: 354,513,379
effective search space: 343877977630
effective search space used: 343877977630
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)