BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11001390.3.1
(588 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA729109.1|CA729109 wdi1c.pk007.e22 wdi1c Triticum aesti... 353 9e-096
gb|CK208561.1|CK208561 FGAS020275 Triticum aestivum FGAS: L... 100 2e-019
gb|CF134287.1|CF134287 WHE4370_C01_F02ZT Wheat meiotic flor... 74 1e-011
gb|BJ302232.1|BJ302232 BJ302232 Y. Ogihara unpublished cDNA... 42 0.042
gb|CA499586.1|CA499586 WHE4009_B10_C19ZT Wheat meiotic anth... 38 0.66
gb|CN012178.1|CN012178 WHE3893_E06_J11ZS Wheat Fusarium gra... 38 0.66
>gb|CA729109.1|CA729109 wdi1c.pk007.e22 wdi1c Triticum aestivum cDNA clone wdi1c.pk007.e22
5' end, mRNA sequence
Length = 617
Score = 353 bits (178), Expect = 9e-096
Identities = 425/507 (83%), Gaps = 1/507 (0%)
Strand = Plus / Plus
Query: 71 ggaagcttacaaaattattacatgtattttggtggaaccaattttgagcggacagctggt 130
||||| ||||| |||||||| ||||||||||||||||| ||||||| || |||||||||
Sbjct: 12 ggaagtttacagaattattatatgtattttggtggaacaaattttgcccgaacagctggt 71
Query: 131 ggtccacttcagataactagctatgattatgatgcaccaattgacgaatatggtatctta 190
||||||||||||||||| || |||||||||||||| ||| || |||| |||||| |||||
Sbjct: 72 ggtccacttcagataacaagttatgattatgatgctccagttaacgagtatggtttctta 131
Query: 191 agacaacctaagtgggggcatttgaaagacctacatgcagctattaaactttgtgaatca 250
| || ||||||||||| ||| ||||||| ||||| ||||||| |||||||||||| ||
Sbjct: 132 aagcagcctaagtggggacatctgaaagatctacacacagctatcaaactttgtgaacca 191
Query: 251 gctcttactgcagtagatggttcacctcattatgtaaaattagggcccatgcaggaggca 310
||||| | |||||| ||||| |||||||| |||||||| ||||| | ||||| ||||||
Sbjct: 192 gctctcattgcagtggatggctcacctcaatatgtaaagttaggatcaatgcaagaggca 251
Query: 311 catgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcacagttt 370
||||| ||||||| || ||| || || ||||| ||||||| |||||||| || | ||
Sbjct: 252 catgtatattccaatggaaaagttcaaacaaacagaagcatgacaggaaatggactgatt 311
Query: 371 tgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggatttttgga 430
||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| |||||
Sbjct: 312 tgctccgcttttcttgccaatattgatgagcataaatatgcatcagtctggatctttggt 371
Query: 431 aaatcttatagtctaccaccat-ggtctgtgagcatactaccagactgtgaaactgtggc 489
|||||||||| ||| ||||||| |||||||||||||||||||||||||| | ||| ||
Sbjct: 372 aaatcttataatctgccaccatnnntctgtgagcatactaccagactgtgagaatgtagc 431
Query: 490 ttttaatacagccagggttggtacacaaacatcgnttttcaatgtcgaatctgggtcccc 549
||| ||||| || |||||| ||||||| || |||| | | ||||||||||||||
Sbjct: 432 tttcaatactgctcacgttggtgcacaaacttctgtttttacgtttgaatctgggtcccc 491
Query: 550 cagctattcaagtaggcataaacctag 576
|| |||||||||| ||||| |||||
Sbjct: 492 aagtcattcaagtagacataagcctag 518
>gb|CK208561.1|CK208561 FGAS020275 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1147
Score = 99.6 bits (50), Expect = 2e-019
Identities = 142/171 (83%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 408 atgcttcagtctggatttttggaaaatct-tatagtctacc-accatggtctgtgagcat 465
||||| ||| |||||| ||||| |||||| |||| ||| || ||||||||||||||||||
Sbjct: 21 atgctncagnctggatctttggtaaatctctataatctgcctaccatggtctgtgagcat 80
Query: 466 actaccagactgtgaaactgtggcttttaatacagccagggttggtacacaaacatcgnt 525
||||||||| ||||| | ||||||||| ||||| || | |||||| ||||||| ||| |
Sbjct: 81 actaccagattgtgagaatgtggctttcaatactgctcgcgttggtgcacaaacttcgat 140
Query: 526 tttcaatgtcgaatctgggtcccccagctattcaagtaggcataaacctag 576
||| | | |||||||||||||| || |||||||||| ||||| |||||
Sbjct: 141 ttttacgtttgaatctgggtccccaagtcattcaagtagacataagcctag 191
>gb|CF134287.1|CF134287 WHE4370_C01_F02ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4370_C01_F02, mRNA sequence
Length = 705
Score = 73.8 bits (37), Expect = 1e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 10 cattgccacataggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtg 69
||||||| ||||||||||| |||||||||||||||||||||| ||||| || |||||||
Sbjct: 587 cattgcctcataggcctgccgaagacagtgcttttgctgttgcacgtttctaccaacgtg 646
Query: 70 g 70
|
Sbjct: 647 g 647
>gb|BJ302232.1|BJ302232 BJ302232 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd14e01 5', mRNA sequence
Length = 561
Score = 42.1 bits (21), Expect = 0.042
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 536 gaatctgggtcccccagctattcaagtaggcataaacctag 576
|||||||||||||| || |||||||||| ||||| |||||
Sbjct: 79 gaatctgggtccccaagtcattcaagtagacataagcctag 119
>gb|CA499586.1|CA499586 WHE4009_B10_C19ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4009_B10_C19, mRNA sequence
Length = 646
Score = 38.2 bits (19), Expect = 0.66
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
|||||||||||||| || ||| |||| ||||||||
Sbjct: 59 agctatgattatgacgctccacttgatgaatatgg 93
>gb|CN012178.1|CN012178 WHE3893_E06_J11ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3893_E06_J11,
mRNA sequence
Length = 784
Score = 38.2 bits (19), Expect = 0.66
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 349 catttcaggaaattcacag 367
|||||||||||||||||||
Sbjct: 591 catttcaggaaattcacag 609
Database: Triticum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:43 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,662
Number of Sequences: 636343
Number of extensions: 84662
Number of successful extensions: 21369
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21356
Number of HSP's gapped (non-prelim): 11
length of query: 588
length of database: 367,240,239
effective HSP length: 19
effective length of query: 569
effective length of database: 355,149,722
effective search space: 202080191818
effective search space used: 202080191818
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)