BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS9f07.yg.2.1
(394 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF770757.1|CF770757 DSBF1_9_C11.g1_A010 Drought-stressed... 638 0.0
gb|CW249386.1|CW249386 104_711_11222816_116_35044_030 Sorgh... 285 1e-075
gb|CW088299.1|CW088299 104_433_10948100_116_32576_076 Sorgh... 278 4e-073
gb|CF770670.1|CF770670 DSBF1_9_C11.b1_A010 Drought-stressed... 278 4e-073
gb|CL187618.1|CL187618 104_403_10901012_116_32464_074 Sorgh... 72 4e-011
gb|CW476677.1|CW476677 fsbb001f233k08f0 Sorghum methylation... 72 4e-011
gb|CW476678.1|CW476678 fsbb001f233k08k0 Sorghum methylation... 72 4e-011
gb|CW162907.1|CW162907 104_570_11151185_116_36445_073 Sorgh... 38 0.58
gb|CW327415.1|CW327415 104_823_11478735_148_35976_062 Sorgh... 38 0.58
gb|CW357993.1|CW357993 fsbb001f024o08k0 Sorghum methylation... 38 0.58
gb|CW485896.1|CW485896 fsbb001f248n21k0 Sorghum methylation... 38 0.58
gb|CL149435.1|CL149435 104_330_10777831_114_31353_151 Sorgh... 36 2.3
gb|CL177601.1|CL177601 104_385_10893948_116_31914_012 Sorgh... 36 2.3
gb|CL177602.1|CL177602 104_385_10893948_148_31913_012 Sorgh... 36 2.3
gb|CW022578.1|CW022578 104_162_10431929_5_30000 Sorghum met... 36 2.3
gb|CW103575.1|CW103575 104_472_11011960_148_34437_060 Sorgh... 36 2.3
gb|BG240639.1|BG240639 OV1_32_D05.b1_A002 Ovary 1 (OV1) Sor... 36 2.3
gb|BG933607.1|BG933607 OV1_32_D05.g1_A002 Ovary 1 (OV1) Sor... 36 2.3
gb|BM326030.1|BM326030 PIC1_64_H09.b1_A002 Pathogen-infecte... 36 2.3
gb|BZ421872.1|BZ421872 id46h03.b1 WGS-SbicolorF (DH5a methy... 34 9.1
gb|BZ423225.1|BZ423225 id46h03.g1 WGS-SbicolorF (DH5a methy... 34 9.1
gb|CW136748.1|CW136748 104_521_11118545_116_34844_065 Sorgh... 34 9.1
gb|CW200513.1|CW200513 104_626_11184098_116_36868_013 Sorgh... 34 9.1
gb|CW200514.1|CW200514 104_626_11184098_148_36867_013 Sorgh... 34 9.1
gb|CW366829.1|CW366829 fsbb001f039p23k0 Sorghum methylation... 34 9.1
gb|CW452818.1|CW452818 fsbb001f193i17f0 Sorghum methylation... 34 9.1
gb|CW467285.1|CW467285 fsbb001f218o15f0 Sorghum methylation... 34 9.1
gb|CW467286.1|CW467286 fsbb001f218o15k0 Sorghum methylation... 34 9.1
gb|CW477261.1|CW477261 fsbb001f234i09f0 Sorghum methylation... 34 9.1
gb|CW477262.1|CW477262 fsbb001f234i09k0 Sorghum methylation... 34 9.1
gb|CW491934.1|CW491934 fsbb001f282a05k0 Sorghum methylation... 34 9.1
gb|AW745697.1|AW745697 WS1_36_F09.g1_A002 Water-stressed 1 ... 34 9.1
gb|BF657661.1|BF657661 OV2_20_B08.b1_A002 Ovary 2 (OV2) Sor... 34 9.1
gb|BG410713.1|BG410713 EM1_25_A08.g1_A002 Embryo 1 (EM1) So... 34 9.1
gb|CD205956.1|CD205956 HS1_19_C01.g1_A012 Heat-shocked seed... 34 9.1
gb|CD229119.1|CD229119 CCC1_13_E07.b1_A007 Callus culture/c... 34 9.1
gb|AC169375.3| Sorghum bicolor clone SB_BBc0020O07, WORKING... 34 9.1
>gb|CF770757.1|CF770757 DSBF1_9_C11.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_C11_A010 3', mRNA sequence
Length = 729
Score = 638 bits (322), Expect = 0.0
Identities = 376/394 (95%)
Strand = Plus / Minus
Query: 1 acaaagcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccc 60
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 505 acaaagcctgacgttgtgttagaccgaccgggtaaattctgtatactttcaggtcatccc 446
Query: 61 cacctctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaa 120
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 cacctctaatactcggtggtctttcatccttccatacaggaacgtgattgagggacctaa 386
Query: 121 atttaccgagcactgcagattccaaggctcccagtgttaactggcccgatctcatataaa 180
|||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 385 atttactgagcactgcagattccaaggctcccagagttaaccggcccgatctcatataaa 326
Query: 181 tgctctctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccctttt 240
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 325 tgctctctgacttaaaccgccctctttctcggataaataagtggtaaactgttccctttt 266
Query: 241 tgctggaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaatgaa 300
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| || |
Sbjct: 265 tgctggaacagctacaaggacgatttgtaaattttggagtcatttcctcctttaactgga 206
Query: 301 tcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcgataa 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 205 tcttggtagcaatatgtatacaaagacgacaagatgaatgaactgctgccatgtcaataa 146
Query: 361 gagctttgaaagaatcagatggaccatcatactt 394
| ||||||||||||||||| ||||||||||||||
Sbjct: 145 gggctttgaaagaatcagagggaccatcatactt 112
>gb|CW249386.1|CW249386 104_711_11222816_116_35044_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222816, DNA
sequence
Length = 668
Score = 285 bits (144), Expect = 1e-075
Identities = 165/172 (95%)
Strand = Plus / Minus
Query: 1 acaaagcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccc 60
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 306 acaaagcctgacgttgtgttagaccgaccgggtaaattctgtatactttcaggtcatccc 247
Query: 61 cacctctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaa 120
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 246 cacctctaatactcggtggtctttcatccttccatacaggaacgtgattgagggacctaa 187
Query: 121 atttaccgagcactgcagattccaaggctcccagtgttaactggcccgatct 172
|||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 186 atttactgagcactgcagattccaaggctcccagagttaaccggcccgatct 135
>gb|CW088299.1|CW088299 104_433_10948100_116_32576_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948100, DNA
sequence
Length = 599
Score = 278 bits (140), Expect = 4e-073
Identities = 164/172 (95%)
Strand = Plus / Minus
Query: 1 acaaagcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccc 60
|||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 568 acaaagcctgacgttgtgttagaccgaccgggtaaattctgtatacttacaggtcatccc 509
Query: 61 cacctctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaa 120
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 508 cacctctaatactcggtggtctttcatccttccatacaggaacgtgattgagggacctaa 449
Query: 121 atttaccgagcactgcagattccaaggctcccagtgttaactggcccgatct 172
|||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 448 atttactgagcactgcagattccaaggctcccagagttaaccggcccgatct 397
Score = 87.7 bits (44), Expect = 7e-016
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 171 ctcatataaatgctctctgacttaaaccgccctctctctcggataaacaagt 222
||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 52 ctcatataaatgctctctgacttaaaccgccctctttctcggataaataagt 1
>gb|CF770670.1|CF770670 DSBF1_9_C11.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_C11_A010 5', mRNA sequence
Length = 641
Score = 278 bits (140), Expect = 4e-073
Identities = 167/176 (94%)
Strand = Plus / Minus
Query: 219 aagtggtaaactgtcccctttttgctggaacagctacaaggtcgatttgtaaattttgga 278
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 637 aagtggtaaactgttccctttttgctggaacagctacaaggacgatttgtaaattttgga 578
Query: 279 gtcctttcctcctttaaatgaatcttggtagcaatatgtatacaaagacgacaagatgaa 338
||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtcatttcctcctttaactggatcttggtagcaatatgtatacaaagacgacaagatgaa 518
Query: 339 tgaaccgctgccatgtcgataagagctttgaaagaatcagatggaccatcatactt 394
||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 517 tgaactgctgccatgtcaataagggctttgaaagaatcagagggaccatcatactt 462
>gb|CL187618.1|CL187618 104_403_10901012_116_32464_074 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901012, DNA
sequence
Length = 593
Score = 71.9 bits (36), Expect = 4e-011
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 8 ctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacctct 67
|||||| || |||||||| |||||||||||| |||||| ||||||| | ||| || ||||
Sbjct: 310 ctgacgctgcgttagaccaactgggtaaattttgtatactttcaggccgtcctcaactct 251
Query: 68 aatactcggtgg 79
||||||||||||
Sbjct: 250 aatactcggtgg 239
Score = 44.1 bits (22), Expect = 0.009
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 100 gaacgtggttgagggacctaaatttaccgagcac 133
|||| |||||||||||| ||||||||||||||||
Sbjct: 234 gaacatggttgagggac-taaatttaccgagcac 202
>gb|CW476677.1|CW476677 fsbb001f233k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233k08, DNA
sequence
Length = 741
Score = 71.9 bits (36), Expect = 4e-011
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 8 ctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacctct 67
|||||| || |||||||| |||||||||||| |||||| ||||||| | ||| || ||||
Sbjct: 342 ctgacgctgcgttagaccaactgggtaaattttgtatactttcaggccgtcctcaactct 283
Query: 68 aatactcggtgg 79
||||||||||||
Sbjct: 282 aatactcggtgg 271
Score = 44.1 bits (22), Expect = 0.009
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 100 gaacgtggttgagggacctaaatttaccgagcac 133
|||| |||||||||||| ||||||||||||||||
Sbjct: 266 gaacatggttgagggac-taaatttaccgagcac 234
>gb|CW476678.1|CW476678 fsbb001f233k08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233k08, DNA
sequence
Length = 664
Score = 71.9 bits (36), Expect = 4e-011
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 8 ctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacctct 67
|||||| || |||||||| |||||||||||| |||||| ||||||| | ||| || ||||
Sbjct: 511 ctgacgctgcgttagaccaactgggtaaattttgtatactttcaggccgtcctcaactct 570
Query: 68 aatactcggtgg 79
||||||||||||
Sbjct: 571 aatactcggtgg 582
Score = 36.2 bits (18), Expect = 2.3
Identities = 31/34 (91%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 100 gaacgtggttgagggacctaaatttaccgagcac 133
|||| ||| |||||||| ||||||||||||||||
Sbjct: 587 gaacatggctgagggac-taaatttaccgagcac 619
>gb|CW162907.1|CW162907 104_570_11151185_116_36445_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151185, DNA
sequence
Length = 649
Score = 38.2 bits (19), Expect = 0.58
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 265 ttgtaaattttggagtcct 283
|||||||||||||||||||
Sbjct: 299 ttgtaaattttggagtcct 281
>gb|CW327415.1|CW327415 104_823_11478735_148_35976_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478735, DNA
sequence
Length = 589
Score = 38.2 bits (19), Expect = 0.58
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 276 ggagtcctttcctccttta 294
|||||||||||||||||||
Sbjct: 320 ggagtcctttcctccttta 338
>gb|CW357993.1|CW357993 fsbb001f024o08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024o08, DNA
sequence
Length = 788
Score = 38.2 bits (19), Expect = 0.58
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 276 ggagtcctttcctccttta 294
|||||||||||||||||||
Sbjct: 727 ggagtcctttcctccttta 709
>gb|CW485896.1|CW485896 fsbb001f248n21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f248n21, DNA
sequence
Length = 671
Score = 38.2 bits (19), Expect = 0.58
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 276 ggagtcctttcctccttta 294
|||||||||||||||||||
Sbjct: 213 ggagtcctttcctccttta 195
>gb|CL149435.1|CL149435 104_330_10777831_114_31353_151 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10777831, DNA
sequence
Length = 754
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 328 gacaagatgaatgaaccg 345
||||||||||||||||||
Sbjct: 354 gacaagatgaatgaaccg 337
>gb|CL177601.1|CL177601 104_385_10893948_116_31914_012 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893948, DNA
sequence
Length = 728
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 328 gacaagatgaatgaaccg 345
||||||||||||||||||
Sbjct: 412 gacaagatgaatgaaccg 395
>gb|CL177602.1|CL177602 104_385_10893948_148_31913_012 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893948, DNA
sequence
Length = 725
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 328 gacaagatgaatgaaccg 345
||||||||||||||||||
Sbjct: 544 gacaagatgaatgaaccg 561
>gb|CW022578.1|CW022578 104_162_10431929_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431929, DNA
sequence
Length = 589
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 328 gacaagatgaatgaaccg 345
||||||||||||||||||
Sbjct: 374 gacaagatgaatgaaccg 357
>gb|CW103575.1|CW103575 104_472_11011960_148_34437_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011960, DNA
sequence
Length = 658
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 328 gacaagatgaatgaaccg 345
||||||||||||||||||
Sbjct: 437 gacaagatgaatgaaccg 454
>gb|BG240639.1|BG240639 OV1_32_D05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 523
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 295 aatgaatcttggtagcaa 312
||||||||||||||||||
Sbjct: 316 aatgaatcttggtagcaa 299
>gb|BG933607.1|BG933607 OV1_32_D05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 607
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 295 aatgaatcttggtagcaa 312
||||||||||||||||||
Sbjct: 248 aatgaatcttggtagcaa 231
>gb|BM326030.1|BM326030 PIC1_64_H09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 355
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 328 gacaagatgaatgaaccg 345
||||||||||||||||||
Sbjct: 293 gacaagatgaatgaaccg 276
>gb|BZ421872.1|BZ421872 id46h03.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id46h03 5', DNA sequence
Length = 714
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 170 tctcatataaatgctct 186
|||||||||||||||||
Sbjct: 465 tctcatataaatgctct 481
>gb|BZ423225.1|BZ423225 id46h03.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id46h03 5', DNA sequence
Length = 823
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 170 tctcatataaatgctct 186
|||||||||||||||||
Sbjct: 800 tctcatataaatgctct 784
>gb|CW136748.1|CW136748 104_521_11118545_116_34844_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118545, DNA
sequence
Length = 662
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 147 gctcccagtgttaactg 163
|||||||||||||||||
Sbjct: 166 gctcccagtgttaactg 150
>gb|CW200513.1|CW200513 104_626_11184098_116_36868_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184098, DNA
sequence
Length = 686
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 170 tctcatataaatgctct 186
|||||||||||||||||
Sbjct: 339 tctcatataaatgctct 355
>gb|CW200514.1|CW200514 104_626_11184098_148_36867_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184098, DNA
sequence
Length = 692
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 170 tctcatataaatgctct 186
|||||||||||||||||
Sbjct: 689 tctcatataaatgctct 673
>gb|CW366829.1|CW366829 fsbb001f039p23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039p23, DNA
sequence
Length = 559
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 371 agaatcagatggaccat 387
|||||||||||||||||
Sbjct: 302 agaatcagatggaccat 286
>gb|CW452818.1|CW452818 fsbb001f193i17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f193i17, DNA
sequence
Length = 654
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 242 gctggaacagctacaag 258
|||||||||||||||||
Sbjct: 390 gctggaacagctacaag 406
>gb|CW467285.1|CW467285 fsbb001f218o15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f218o15, DNA
sequence
Length = 767
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 170 tctcatataaatgctct 186
|||||||||||||||||
Sbjct: 538 tctcatataaatgctct 522
>gb|CW467286.1|CW467286 fsbb001f218o15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f218o15, DNA
sequence
Length = 746
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 170 tctcatataaatgctct 186
|||||||||||||||||
Sbjct: 678 tctcatataaatgctct 694
>gb|CW477261.1|CW477261 fsbb001f234i09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f234i09, DNA
sequence
Length = 746
Score = 34.2 bits (17), Expect = 9.1
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 60 ccacctctaatactcggtggc 80
|||||||| ||||||||||||
Sbjct: 491 ccacctctcatactcggtggc 471
>gb|CW477262.1|CW477262 fsbb001f234i09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f234i09, DNA
sequence
Length = 688
Score = 34.2 bits (17), Expect = 9.1
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 60 ccacctctaatactcggtggc 80
|||||||| ||||||||||||
Sbjct: 508 ccacctctcatactcggtggc 528
>gb|CW491934.1|CW491934 fsbb001f282a05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f282a05, DNA
sequence
Length = 731
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 242 gctggaacagctacaag 258
|||||||||||||||||
Sbjct: 498 gctggaacagctacaag 514
>gb|AW745697.1|AW745697 WS1_36_F09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 522
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 242 gctggaacagctacaag 258
|||||||||||||||||
Sbjct: 111 gctggaacagctacaag 127
>gb|BF657661.1|BF657661 OV2_20_B08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 559
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 373 aatcagatggaccatca 389
|||||||||||||||||
Sbjct: 56 aatcagatggaccatca 72
>gb|BG410713.1|BG410713 EM1_25_A08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 338
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 242 gctggaacagctacaag 258
|||||||||||||||||
Sbjct: 28 gctggaacagctacaag 44
>gb|CD205956.1|CD205956 HS1_19_C01.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_19_C01_A012 5', mRNA sequence
Length = 488
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 373 aatcagatggaccatca 389
|||||||||||||||||
Sbjct: 315 aatcagatggaccatca 331
>gb|CD229119.1|CD229119 CCC1_13_E07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_E07_A007 3', mRNA sequence
Length = 638
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 242 gctggaacagctacaag 258
|||||||||||||||||
Sbjct: 242 gctggaacagctacaag 258
>gb|AC169375.3| Sorghum bicolor clone SB_BBc0020O07, WORKING DRAFT SEQUENCE, 11 unordered
pieces
Length = 124462
Score = 34.2 bits (17), Expect = 9.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 242 gctggaacagctacaag 258
|||||||||||||||||
Sbjct: 101473 gctggaacagctacaag 101489
Database: Sorghum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:37 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 88,445
Number of Sequences: 832831
Number of extensions: 88445
Number of successful extensions: 22394
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22342
Number of HSP's gapped (non-prelim): 50
length of query: 394
length of database: 491,359,669
effective HSP length: 19
effective length of query: 375
effective length of database: 475,535,880
effective search space: 178325955000
effective search space used: 178325955000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)