BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN28g01.yg.2.1
(513 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG464188.1|BG464188 EM1_70_F11.b1_A002 Embryo 1 (EM1) So... 674 0.0
gb|BF422171.1|BF422171 FM1_12_F11.b1_A003 Floral-Induced Me... 143 2e-032
gb|CD462636.1|CD462636 ETH1_38_A10.g1_A002 Ethylene-treated... 143 2e-032
gb|CF488859.1|CF488859 POL1_52_D12.g1_A002 Pollen Sorghum b... 143 2e-032
gb|CW118882.1|CW118882 104_495_11108451_148_34628_006 Sorgh... 90 2e-016
gb|CD207791.1|CD207791 HS1_34_F10.g1_A012 Heat-shocked seed... 78 9e-013
gb|CN137529.1|CN137529 OX1_57_H05.g1_A002 Oxidatively-stres... 52 5e-005
gb|CL174809.1|CL174809 104_379_10891913_116_31769_281 Sorgh... 40 0.19
gb|BG048697.1|BG048697 OV1_21_H02.b1_A002 Ovary 1 (OV1) Sor... 40 0.19
gb|CF073501.1|CF073501 FE1_10_C03.g1_A002 Iron-deficient se... 40 0.19
>gb|BG464188.1|BG464188 EM1_70_F11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 618
Score = 674 bits (340), Expect = 0.0
Identities = 382/396 (96%)
Strand = Plus / Minus
Query: 100 gtacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcg 159
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtacatcatcccccttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcg 380
Query: 160 aagctgctcttcagaatgctcagtctcgtggagttgatcttcactctcacaatgcaccct 219
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aagctgctcttcagattgctcggtctcgtggagttgatcttcactctcacaatgcaccct 320
Query: 220 ttcaagaaaatttttccattcatctgggtagattttttgcaaataaaaaaggatggaaac 279
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 319 ttcaagaaaatttttccattcatctgggtagattttttgcaaatagaaaaggatagaaac 260
Query: 280 tccgtcctcattctgttctgctagtgcttgtgaagagaaaagaacatcttctttataata 339
|| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 259 cccatcctcattctgttcccctagtgcttgtgaagagaaaagaacgtcttctttataata 200
Query: 340 aggagtcaagacagagaagggcaacatttgccgcacttttggagcatctggcatcgacat 399
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 199 aggagtcaagacagagaagggcaacatttgccgcacttttggggcatctggcatcgacat 140
Query: 400 aaaaagagaattagcaaagaaagatatcctccttctagcatccaggtttgtagggacatc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 aaaaagagaattagcaaagaaagatatcctccttctagcatccaggtttgtagggacatc 80
Query: 460 catagccgattccttcaccgtgagtaaaagtcgaag 495
|||||| ||||||||||||||||| | |||||||||
Sbjct: 79 catagctgattccttcaccgtgagcagaagtcgaag 44
>gb|BF422171.1|BF422171 FM1_12_F11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 553
Score = 143 bits (72), Expect = 2e-032
Identities = 90/96 (93%)
Strand = Plus / Minus
Query: 8 aggggctaaccagctcaacggatgactttccctcttcaccatttgcttccacggccatag 67
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||
Sbjct: 452 aggggctaaccagctcaatggatgactttccctcgtcaccatttgcttccacgcccagag 393
Query: 68 aattcatcagtgctgatactaaatctttcttggtac 103
||||||||| |||||||||||||||||||||||||
Sbjct: 392 aattcatcaaggctgatactaaatctttcttggtac 357
>gb|CD462636.1|CD462636 ETH1_38_A10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_A10_A002 5', mRNA sequence
Length = 701
Score = 143 bits (72), Expect = 2e-032
Identities = 90/96 (93%)
Strand = Plus / Minus
Query: 8 aggggctaaccagctcaacggatgactttccctcttcaccatttgcttccacggccatag 67
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||
Sbjct: 446 aggggctaaccagctcaatggatgactttccctcgtcaccatttgcttccacgcccagag 387
Query: 68 aattcatcagtgctgatactaaatctttcttggtac 103
||||||||| |||||||||||||||||||||||||
Sbjct: 386 aattcatcaaggctgatactaaatctttcttggtac 351
>gb|CF488859.1|CF488859 POL1_52_D12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_52_D12_A002 5', mRNA sequence
Length = 732
Score = 143 bits (72), Expect = 2e-032
Identities = 90/96 (93%)
Strand = Plus / Minus
Query: 8 aggggctaaccagctcaacggatgactttccctcttcaccatttgcttccacggccatag 67
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||
Sbjct: 417 aggggctaaccagctcaatggatgactttccctcgtcaccatttgcttccacgcccagag 358
Query: 68 aattcatcagtgctgatactaaatctttcttggtac 103
||||||||| |||||||||||||||||||||||||
Sbjct: 357 aattcatcaaggctgatactaaatctttcttggtac 322
>gb|CW118882.1|CW118882 104_495_11108451_148_34628_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108451, DNA
sequence
Length = 646
Score = 89.7 bits (45), Expect = 2e-016
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| | ||| ||||||||||||| ||||| |||||| ||||||||
Sbjct: 446 gagaagggcaacatgttccgaacttttggagcattgggcatatccataaatagagaattt 387
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| || |||||||| || || ||||| ||||||||||| || |||
Sbjct: 386 gcaaagaacgatatccgccgcctagcatcaagattagtaggaacatccatagcagactcc 327
Query: 473 ttcac 477
|||||
Sbjct: 326 ttcac 322
>gb|CD207791.1|CD207791 HS1_34_F10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_34_F10_A012 5', mRNA sequence
Length = 689
Score = 77.8 bits (39), Expect = 9e-013
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 8 aggggctaaccagctcaacggatgactttccctcttcaccatttgct 54
|||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 306 aggggctaaccagctcaatggatgactttccctcgtcaccatttgct 260
>gb|CN137529.1|CN137529 OX1_57_H05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_H05_A002 5', mRNA sequence
Length = 797
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 230 tttttccattcatctgggtagattttttgcaaataaaaaaggatggaaactccgtcctca 289
||||||||||||||||| || |||||||||| || || ||| |||||||||| || |||
Sbjct: 552 tttttccattcatctggataaattttttgcaggtagaatagggtggaaactccatcttca 493
Query: 290 tt 291
||
Sbjct: 492 tt 491
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 446 tttgtagggacatccatagccgattccttcac 477
|||| ||| ||||||||||| |||||||||||
Sbjct: 336 tttgaaggaacatccatagcagattccttcac 305
>gb|CL174809.1|CL174809 104_379_10891913_116_31769_281 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891913, DNA
sequence
Length = 746
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 446 tttgtagggacatccatagccgattccttcac 477
|||| ||| ||||||||||| |||||||||||
Sbjct: 328 tttgaaggaacatccatagcagattccttcac 359
>gb|BG048697.1|BG048697 OV1_21_H02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 198
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 446 tttgtagggacatccatagccgattccttcac 477
|||| ||| ||||||||||| |||||||||||
Sbjct: 190 tttgaaggaacatccatagcagattccttcac 159
>gb|CF073501.1|CF073501 FE1_10_C03.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_10_C03_A002 5', mRNA sequence
Length = 782
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 446 tttgtagggacatccatagccgattccttcac 477
|||| ||| ||||||||||| |||||||||||
Sbjct: 408 tttgaaggaacatccatagcagattccttcac 377
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 145,509
Number of Sequences: 832831
Number of extensions: 145509
Number of successful extensions: 39488
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39475
Number of HSP's gapped (non-prelim): 13
length of query: 513
length of database: 491,359,669
effective HSP length: 19
effective length of query: 494
effective length of database: 475,535,880
effective search space: 234914724720
effective search space used: 234914724720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)