BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN1e04.yg.2.1
(361 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW145805.1|CW145805 104_538_11138659_148_34980_072 Sorgh... 258 3e-067
gb|CW332789.1|CW332789 104_830_11481600_116_36041_088 Sorgh... 258 3e-067
gb|CW332790.1|CW332790 104_830_11481600_148_36042_088 Sorgh... 258 3e-067
gb|CW265967.1|CW265967 104_735_11232172_148_35268_008 Sorgh... 234 4e-060
gb|CW407483.1|CW407483 fsbb001f100p20f0 Sorghum methylation... 196 1e-048
>gb|CW145805.1|CW145805 104_538_11138659_148_34980_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138659, DNA
sequence
Length = 697
Score = 258 bits (130), Expect = 3e-067
Identities = 160/170 (94%)
Strand = Plus / Minus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 367 catctaccatgttcttgaagaaacagttcccttgtatgtagctatgatagtggcctacct 308
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct: 307 atccatacaatggtggaagctattcaccccagagcagtgctctggtatcaacaagtttgt 248
Query: 210 agcgaagttttccatccctttgctctctttccagatcctctctacaaaca 259
|| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 247 ggcaaagttttccattcctttactctctttccagatcctctctacaaaca 198
Score = 40.1 bits (20), Expect = 0.13
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 18 agattgggcaggacatttggagtattcttcag 49
|||||||| | |||||||||||| ||||||||
Sbjct: 427 agattgggtaagacatttggagtgttcttcag 396
>gb|CW332789.1|CW332789 104_830_11481600_116_36041_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481600, DNA
sequence
Length = 726
Score = 258 bits (130), Expect = 3e-067
Identities = 160/170 (94%)
Strand = Plus / Plus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 382 catctaccatgttcttgaagaaacagttcccttgtatgtagctatgatagtggcctacct 441
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct: 442 atccatacaatggtggaagctattcaccccagagcagtgctctggtatcaacaagtttgt 501
Query: 210 agcgaagttttccatccctttgctctctttccagatcctctctacaaaca 259
|| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 502 ggcaaagttttccattcctttactctctttccagatcctctctacaaaca 551
Score = 40.1 bits (20), Expect = 0.13
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 18 agattgggcaggacatttggagtattcttcag 49
|||||||| | |||||||||||| ||||||||
Sbjct: 322 agattgggtaagacatttggagtgttcttcag 353
>gb|CW332790.1|CW332790 104_830_11481600_148_36042_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481600, DNA
sequence
Length = 666
Score = 258 bits (130), Expect = 3e-067
Identities = 160/170 (94%)
Strand = Plus / Minus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 498 catctaccatgttcttgaagaaacagttcccttgtatgtagctatgatagtggcctacct 439
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct: 438 atccatacaatggtggaagctattcaccccagagcagtgctctggtatcaacaagtttgt 379
Query: 210 agcgaagttttccatccctttgctctctttccagatcctctctacaaaca 259
|| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 378 ggcaaagttttccattcctttactctctttccagatcctctctacaaaca 329
Score = 40.1 bits (20), Expect = 0.13
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 18 agattgggcaggacatttggagtattcttcag 49
|||||||| | |||||||||||| ||||||||
Sbjct: 558 agattgggtaagacatttggagtgttcttcag 527
>gb|CW265967.1|CW265967 104_735_11232172_148_35268_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232172, DNA
sequence
Length = 678
Score = 234 bits (118), Expect = 4e-060
Identities = 148/158 (93%)
Strand = Plus / Plus
Query: 102 tcttgaagaaacggttcccctgtatgtagctatgatagtggcctacctatccatacaatg 161
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttgaagaaacagttcccttgtatgtagctatgatagtggcctacctatccatacaatg 60
Query: 162 gtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgtagcgaagttttc 221
||||||||| ||||| |||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 61 gtggaagctattcaccccagagcagtgctctggtatcaacaagtttgtggcaaagttttc 120
Query: 222 catccctttgctctctttccagatcctctctacaaaca 259
||| ||||| ||||||||||||||||||||||||||||
Sbjct: 121 cattcctttactctctttccagatcctctctacaaaca 158
>gb|CW407483.1|CW407483 fsbb001f100p20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100p20, DNA
sequence
Length = 601
Score = 196 bits (99), Expect = 1e-048
Identities = 147/163 (90%)
Strand = Plus / Minus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||||||||||||||||| | |||||| |||||||||||||||||||| ||| |||
Sbjct: 580 catctaccatgttcttgaagaaccagttcccttgtatgtagctatgatagtgccctccct 521
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
|||||| |||||||||||||| ||||| ||||| |||||||| ||||||| |||||| ||
Sbjct: 520 atccatccaatggtggaagctattcaccccagaccagtgctctggtatcaccaagtttgt 461
Query: 210 agcgaagttttccatccctttgctctctttccagatcctctct 252
|| ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 460 ggcaaagttttccattcctttactctctttccagatcctctct 418
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,556
Number of Sequences: 832831
Number of extensions: 55556
Number of successful extensions: 15600
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15585
Number of HSP's gapped (non-prelim): 15
length of query: 361
length of database: 491,359,669
effective HSP length: 19
effective length of query: 342
effective length of database: 475,535,880
effective search space: 162633270960
effective search space used: 162633270960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)