BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCM14d12.yg.2.1
         (593 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CW434433.1|CW434433  fsbb001f150c03f0 Sorghum methylation...   210   1e-052
gb|CW116980.1|CW116980  104_492_11107412_148_34603_066 Sorgh...   159   4e-037
gb|CW116979.1|CW116979  104_492_11107412_116_34607_066 Sorgh...   103   2e-020
gb|BE598881.1|BE598881  PI1_83_C07.b1_A002 Pathogen induced ...    72   6e-011
gb|BG052201.1|BG052201  RHIZ2_7_D11.b1_A003 Rhizome2 (RHIZ2)...    72   6e-011
gb|BG102383.1|BG102383  RHIZ2_23_A10.b1_A003 Rhizome2 (RHIZ2...    72   6e-011
gb|BG241776.1|BG241776  RHIZ2_50_A08.b1_A003 Rhizome2 (RHIZ2...    72   6e-011
gb|BG465562.1|BG465562  RHIZ2_46_A10.b1_A003 Rhizome2 (RHIZ2...    72   6e-011
gb|BF655662.1|BF655662  FM1_47_C09.b1_A003 Floral-Induced Me...    68   1e-009
gb|BG948020.1|BG948020  IP1_8_D05.b1_A002 Immature pannicle ...    64   2e-008
gb|CF432727.1|CF432727  NIT1_18_C04.g1_A002 Nitrogen-deficie...    64   2e-008
gb|CL172543.1|CL172543  104_375_10890237_148_31796_141 Sorgh...    56   4e-006
gb|CD425359.1|CD425359  SA1_11_F01.g1_A002 Salicylic acid-tr...    56   4e-006
gb|BI245743.1|BI245743  IP1_63_G04.b1_A002 Immature pannicle...    50   2e-004
gb|BF481793.1|BF481793  FM1_20_D08.b1_A003 Floral-Induced Me...    48   0.001
gb|BF586580.1|BF586580  FM1_29_A05.b1_A003 Floral-Induced Me...    48   0.001
gb|CX621396.1|CX621396  GABR1_57_H04.g1_A002 GA- or brassino...    46   0.004
gb|CW502291.1|CW502291  fsbb001f298i22k0 Sorghum methylation...    44   0.014
gb|BE355233.1|BE355233  DG1_113_C09.b1_A002 Dark Grown 1 (DG...    44   0.014
gb|BF481056.1|BF481056  FM1_15_G12.b1_A003 Floral-Induced Me...    44   0.014
gb|BI643766.1|BI643766  IP1_56_G10.b1_A002 Immature pannicle...    44   0.014
gb|CD227355.1|CD227355  CCC1_50_D12.g1_A007 Callus culture/c...    44   0.014
gb|CN128155.1|CN128155  RHOH1_27_H08.b1_A002 Acid- and alkal...    44   0.014
gb|CN129331.1|CN129331  RHOH1_34_G09.g1_A002 Acid- and alkal...    44   0.014
gb|CX607503.1|CX607503  ANR1_29_C09.b1_A002 Anaerobic roots ...    44   0.014
>gb|CW434433.1|CW434433 fsbb001f150c03f0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f150c03, DNA
           sequence
          Length = 625

 Score =  210 bits (106), Expect = 1e-052
 Identities = 133/142 (93%)
 Strand = Plus / Plus

                                                                       
Query: 163 acctggaccattccggcatggtctcgaacattatttccatgccatggagctccttctggt 222
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 377 acctggaccatcccggcatggtctcgaacattatttccgtgccatggagctccttctggt 436

                                                                       
Query: 223 agggaccatcctccctcgggaactttgcgtgaattagcagctactgtgtttatgtgaacc 282
           ||||||||||||||||||||||||||||||||||||||| |||||  ||||||  ||| |
Sbjct: 437 agggaccatcctccctcgggaactttgcgtgaattagcaactactccgtttatacgaatc 496

                                 
Query: 283 ttaaattcttcgtattctctct 304
           ||||||||||| ||||||||||
Sbjct: 497 ttaaattcttcatattctctct 518

 Score =  210 bits (106), Expect = 1e-052
 Identities = 124/130 (95%)
 Strand = Plus / Plus

                                                                       
Query: 39  caatgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtga 98
           ||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||
Sbjct: 56  caatgcattcaaggcaccagcctttttatgatgatcataaccaggccttttctctcgtga 115

                                                                       
Query: 99  aacatagaccaaccaaggcagcttatttccagcatcatccatgacacaatcattaccagt 158
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 116 aacatagaccaaccaaggcagcttatttccagcatcatccatgacacaatcatggccagt 175

                     
Query: 159 gatgacctgg 168
           ||||||||||
Sbjct: 176 gatgacctgg 185
>gb|CW116980.1|CW116980 104_492_11107412_148_34603_066 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11107412, DNA
           sequence
          Length = 324

 Score =  159 bits (80), Expect = 4e-037
 Identities = 86/88 (97%)
 Strand = Plus / Plus

                                                                       
Query: 163 acctggaccattccggcatggtctcgaacattatttccatgccatggagctccttctggt 222
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 237 acctggaccatcccggcatggtctcgaacattatttccgtgccatggagctccttctggt 296

                                       
Query: 223 agggaccatcctccctcgggaactttgc 250
           ||||||||||||||||||||||||||||
Sbjct: 297 agggaccatcctccctcgggaactttgc 324

 Score = 73.8 bits (37), Expect = 2e-011
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                        
Query: 124 tttccagcatcatccatgacacaatcattaccagtgatgacctgg 168
           ||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 1   tttccagcatcatccatgacacaatcatggccagtgatgacctgg 45
>gb|CW116979.1|CW116979 104_492_11107412_116_34607_066 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11107412, DNA
           sequence
          Length = 287

 Score =  103 bits (52), Expect = 2e-020
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                       
Query: 513 atcaacaggataatnnacagcnagtatggacaaaactgtgtntgcaataattaaaggagg 572
           ||||||||||||||  ||||| ||||||||||||||||||| |||| |||||||||||||
Sbjct: 287 atcaacaggataatccacagccagtatggacaaaactgtgtttgcagtaattaaaggagg 228

                                
Query: 573 ctcnnncattggatcaactgt 593
            ||   |||||||||||||||
Sbjct: 227 ttccttcattggatcaactgt 207
>gb|BE598881.1|BE598881 PI1_83_C07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
           mRNA sequence
          Length = 473

 Score = 71.9 bits (36), Expect = 6e-011
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 358 tcaattttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacag 417
           ||||||||||||||||| ||||| || || |||| |||||| || ||||  |||||||||
Sbjct: 187 tcaattttctgagcaaagtaccactctggggccctaggctctatgttgtacttcttacag 128

                           
Query: 418 aagggaacccattttc 433
           || |||||||||||||
Sbjct: 127 aatggaacccattttc 112

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 286 aattcttcgtattctctcttcattgcacgtcgttct 321
           |||||||| |||||||||||||| || || ||||||
Sbjct: 259 aattcttcatattctctcttcatggcccggcgttct 224
>gb|BG052201.1|BG052201 RHIZ2_7_D11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
           sequence
          Length = 468

 Score = 71.9 bits (36), Expect = 6e-011
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                       
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
           ||||| ||||||||||||  |||||||  | ||||||| |  |  |||||||| ||||||
Sbjct: 135 cagaaaggaacccatttttttgcaaattcagatgtttcagacaacgcttcaaacgtaagc 76

                                                               
Query: 475 attgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
           ||||||||||||||||| || ||||||||| | || || ||||| |||||||
Sbjct: 75  attgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataat 24

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 280 accttaaattcttcgtattctctcttcattgc 311
           ||||| ||||| ||||||||||||||||||||
Sbjct: 270 accttgaattcctcgtattctctcttcattgc 239
>gb|BG102383.1|BG102383 RHIZ2_23_A10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
           sequence
          Length = 491

 Score = 71.9 bits (36), Expect = 6e-011
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                       
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
           ||||| ||||||||||||  |||||||  | ||||||| |  |  |||||||| ||||||
Sbjct: 359 cagaaaggaacccatttttttgcaaattcagatgtttcagacaacgcttcaaacgtaagc 300

                                                               
Query: 475 attgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
           ||||||||||||||||| || ||||||||| | || || ||||| |||||||
Sbjct: 299 attgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataat 248

 Score = 44.1 bits (22), Expect = 0.014
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 286 aattcttcgtattctctcttcattgc 311
           ||||| ||||||||||||||||||||
Sbjct: 488 aattcctcgtattctctcttcattgc 463
>gb|BG241776.1|BG241776 RHIZ2_50_A08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
           sequence
          Length = 429

 Score = 71.9 bits (36), Expect = 6e-011
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                       
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
           ||||| ||||||||||||  |||||||  | ||||||| |  |  |||||||| ||||||
Sbjct: 350 cagaaaggaacccatttttttgcaaattcagatgtttcagacaacgcttcaaacgtaagc 291

                                                               
Query: 475 attgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
           ||||||||||||||||| || ||||||||| | || || ||||| |||||||
Sbjct: 290 attgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataat 239
>gb|BG465562.1|BG465562 RHIZ2_46_A10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
           sequence
          Length = 580

 Score = 71.9 bits (36), Expect = 6e-011
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                       
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
           ||||| ||||||||||||  |||||||  | ||||||| |  |  |||||||| ||||||
Sbjct: 350 cagaaaggaacccatttttttgcaaattcagatgtttcagacaacgcttcaaacgtaagc 291

                                                               
Query: 475 attgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
           ||||||||||||||||| || ||||||||| | || || ||||| |||||||
Sbjct: 290 attgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataat 239

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 280 accttaaattcttcgtattctctcttcattgc 311
           ||||| ||||| ||||||||||||||||||||
Sbjct: 485 accttgaattcctcgtattctctcttcattgc 454
>gb|BF655662.1|BF655662 FM1_47_C09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
           propinquum cDNA, mRNA sequence
          Length = 419

 Score = 67.9 bits (34), Expect = 1e-009
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                       
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
           ||||| ||||||||||||  |||||||  | ||||||| |  |  |||||||| ||||||
Sbjct: 291 cagaaaggaacccatttttttgcaaattcagatgtttcagacaacgcttcaaaggtaagc 232

                                         
Query: 475 attgcagcaccatcatccgacacatagcag 504
           ||||||||||||||||| || |||||||||
Sbjct: 231 attgcagcaccatcatcagaaacatagcag 202
>gb|BG948020.1|BG948020 IP1_8_D05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
           mRNA sequence
          Length = 205

 Score = 63.9 bits (32), Expect = 2e-008
 Identities = 92/112 (82%)
 Strand = Plus / Minus

                                                                       
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
           ||||| |||||||||||   |||||||  | ||||||| |  | ||||||||| || |||
Sbjct: 185 cagaaaggaacccatttctttgcaaattcagatgtttcagccaatgcttcaaatgtcagc 126

                                                               
Query: 475 attgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
           || |||||||||||||| || ||||||||  |||| |||||||| |||||||
Sbjct: 125 atggcagcaccatcatcagaaacatagcatgaaaccttatcaactggataat 74
>gb|CF432727.1|CF432727 NIT1_18_C04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
           cDNA clone NIT1_18_C04_A002 5', mRNA sequence
          Length = 627

 Score = 63.9 bits (32), Expect = 2e-008
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                       
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
           ||||||||| || ||||| |||||||||||||| || ||||||||  |||| ||||||||
Sbjct: 560 tgcttcaaatgtcagcatggcagcaccatcatcagaaacatagcatgaaaccttatcaac 501

                   
Query: 519 aggataat 526
            |||||||
Sbjct: 500 tggataat 493
>gb|CL172543.1|CL172543 104_375_10890237_148_31796_141 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10890237, DNA
           sequence
          Length = 677

 Score = 56.0 bits (28), Expect = 4e-006
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 39  caatgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtga 98
           |||||||||||  ||||||||||| |||||||| ||||  || |||| |||||| | |||
Sbjct: 433 caatgcattcatagcaccagctttcttatgatggtcatagcctggccgtttctctcttga 374

                       
Query: 99  aacatagaccaa 110
           |||||| |||||
Sbjct: 373 aacataaaccaa 362
>gb|CD425359.1|CD425359 SA1_11_F01.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
           cDNA clone SA1_11_F01_A002 5', mRNA sequence
          Length = 591

 Score = 56.0 bits (28), Expect = 4e-006
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 475 attgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
           ||||| ||||||||||| || ||||||||  |||| ||||||||||||||||
Sbjct: 591 attgcggcaccatcatcagaaacatagcaagaaaccttatcaacaggataat 540
>gb|BI245743.1|BI245743 IP1_63_G04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
           mRNA sequence
          Length = 455

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                       
Query: 457 agtgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatca 516
           ||||| ||||| || ||||||||||| |||||||| || ||||||||  | || ||||| 
Sbjct: 191 agtgcatcaaatgtcagcattgcagctccatcatcagatacatagcaagagaccttatcc 132

                                     
Query: 517 acaggataatnnacagcnagtatgga 542
           ||||| ||||  ||||| || |||||
Sbjct: 131 acagggtaatccacagcaagaatgga 106
>gb|BF481793.1|BF481793 FM1_20_D08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
           propinquum cDNA, mRNA sequence
          Length = 475

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 385 ggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgtgcaaa 440
           ||||||| ||| || || ||||||||||| || |||||||||||||| | ||||||
Sbjct: 249 ggagccctaggttcaatgttgtgtttcttgcaaaagggaacccatttccttgcaaa 194

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 92/116 (79%)
 Strand = Plus / Minus

                                                                       
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
           ||||||||||| | ||| || | ||| ||||| || ||||||||  | ||||| ||||||
Sbjct: 174 gcttcaaaagtcaacatagctgaaccgtcatcagaaacatagcatgatactttgtcaaca 115

                                                                   
Query: 520 ggataatnnacagcnagtatggacaaaactgtgtntgcaataattaaaggaggctc 575
           || ||||  ||||| || |||||||  || ||||  ||| |||||| |||||||||
Sbjct: 114 gggtaatccacagcaagaatggacaggacagtgttggcagtaattagaggaggctc 59
>gb|BF586580.1|BF586580 FM1_29_A05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
           propinquum cDNA, mRNA sequence
          Length = 398

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 385 ggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgtgcaaa 440
           ||||||| ||| || || ||||||||||| || |||||||||||||| | ||||||
Sbjct: 337 ggagccctaggttcaatgttgtgtttcttgcaaaagggaacccatttccttgcaaa 282

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 92/116 (79%)
 Strand = Plus / Minus

                                                                       
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
           ||||||||||| | ||| || | ||| ||||| || ||||||||  | ||||| ||||||
Sbjct: 262 gcttcaaaagtcaacatagctgaaccgtcatcagaaacatagcatgatactttgtcaaca 203

                                                                   
Query: 520 ggataatnnacagcnagtatggacaaaactgtgtntgcaataattaaaggaggctc 575
           || ||||  ||||| || |||||||  || ||||  ||| |||||| |||||||||
Sbjct: 202 gggtaatccacagcaagaatggacaggacagtgttggcagtaattagaggaggctc 147
>gb|CX621396.1|CX621396 GABR1_57_H04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
           bicolor cDNA clone GABR1_57_H04_A002 5', mRNA sequence
          Length = 723

 Score = 46.1 bits (23), Expect = 0.004
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 39  caatgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtga 98
           |||||||||||  ||||||||||| |||||||| ||||  || |||| |||||| | |||
Sbjct: 63  caatgcattcatagcaccagctttcttatgatggtcatagcctggccgtttctctcttga 4

              
Query: 99  aac 101
           |||
Sbjct: 3   aac 1
>gb|CW502291.1|CW502291 fsbb001f298i22k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f298i22, DNA
           sequence
          Length = 689

 Score = 44.1 bits (22), Expect = 0.014
 Identities = 58/71 (81%)
 Strand = Plus / Minus

                                                                       
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
           ||||||||| || ||||||||  | ||||| || ||||| ||||  ||||| || |||||
Sbjct: 661 accatcatcagaaacatagcatgacactttgtcgacagggtaatccacagcaagaatgga 602

                      
Query: 543 caaaactgtgt 553
           |||||| ||||
Sbjct: 601 caaaacagtgt 591
>gb|BE355233.1|BE355233 DG1_113_C09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 494

 Score = 44.1 bits (22), Expect = 0.014
 Identities = 58/71 (81%)
 Strand = Plus / Minus

                                                                       
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
           ||||||||| || ||||||||  | ||||| || ||||| ||||  ||||| || |||||
Sbjct: 205 accatcatcagaaacatagcatgacactttgtcgacagggtaatccacagcaagaatgga 146

                      
Query: 543 caaaactgtgt 553
           |||||| ||||
Sbjct: 145 caaaacagtgt 135
>gb|BF481056.1|BF481056 FM1_15_G12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
           propinquum cDNA, mRNA sequence
          Length = 540

 Score = 44.1 bits (22), Expect = 0.014
 Identities = 73/90 (81%)
 Strand = Plus / Minus

                                                                       
Query: 39  caatgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtga 98
           |||||||||||  |||||||| || |||||||| ||||  || |||| ||| || | |||
Sbjct: 455 caatgcattcatagcaccagccttcttatgatggtcatagcctggccgtttttctcttga 396

                                         
Query: 99  aacatagaccaaccaaggcagcttatttcc 128
           ||| || ||||| | |||||||| ||||||
Sbjct: 395 aacgtaaaccaatcgaggcagctcatttcc 366

 Score = 42.1 bits (21), Expect = 0.057
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 279 aaccttaaattcttcgtattctctcttcattgc 311
           |||||| ||||| ||||| ||||||||||||||
Sbjct: 215 aaccttgaattcctcgtactctctcttcattgc 183

 Score = 42.1 bits (21), Expect = 0.057
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                       
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
           ||||| |||||||||||   |||||||  | ||||||| |  | ||||||||| || |||
Sbjct: 79  cagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaatgtcagc 20

                            
Query: 475 attgcagcaccatcatc 491
           || ||||||||||||||
Sbjct: 19  atggcagcaccatcatc 3
>gb|BI643766.1|BI643766 IP1_56_G10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
           mRNA sequence
          Length = 556

 Score = 44.1 bits (22), Expect = 0.014
 Identities = 58/71 (81%)
 Strand = Plus / Minus

                                                                       
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
           ||||||||| || ||||||||  | ||||| || ||||| ||||  ||||| || |||||
Sbjct: 275 accatcatcagaaacatagcatgacactttgtcgacagggtaatccacagcaagaatgga 216

                      
Query: 543 caaaactgtgt 553
           |||||| ||||
Sbjct: 215 caaaacagtgt 205
>gb|CD227355.1|CD227355 CCC1_50_D12.g1_A007 Callus culture/cell suspension Sorghum bicolor
           cDNA clone CCC1_50_D12_A007 5', mRNA sequence
          Length = 669

 Score = 44.1 bits (22), Expect = 0.014
 Identities = 58/71 (81%)
 Strand = Plus / Minus

                                                                       
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
           ||||||||| || ||||||||  | ||||| || ||||| ||||  ||||| || |||||
Sbjct: 258 accatcatcagaaacatagcatgacactttgtcgacagggtaatccacagcaagaatgga 199

                      
Query: 543 caaaactgtgt 553
           |||||| ||||
Sbjct: 198 caaaacagtgt 188
>gb|CN128155.1|CN128155 RHOH1_27_H08.b1_A002 Acid- and alkaline-treated roots Sorghum
           bicolor cDNA clone RHOH1_27_H08_A002 3', mRNA sequence
          Length = 783

 Score = 44.1 bits (22), Expect = 0.014
 Identities = 73/90 (81%)
 Strand = Plus / Minus

                                                                       
Query: 39  caatgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtga 98
           |||||||||||  |||||||| || |||||||| ||||  || |||| ||| || | |||
Sbjct: 338 caatgcattcatagcaccagccttcttatgatggtcatagcctggccgtttttctcttga 279

                                         
Query: 99  aacatagaccaaccaaggcagcttatttcc 128
           ||| || ||||| | |||||||| ||||||
Sbjct: 278 aacgtaaaccaatcgaggcagctcatttcc 249

 Score = 42.1 bits (21), Expect = 0.057
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 279 aaccttaaattcttcgtattctctcttcattgc 311
           |||||| ||||| ||||| ||||||||||||||
Sbjct: 98  aaccttgaattcctcgtactctctcttcattgc 66
>gb|CN129331.1|CN129331 RHOH1_34_G09.g1_A002 Acid- and alkaline-treated roots Sorghum
           bicolor cDNA clone RHOH1_34_G09_A002 5', mRNA sequence
          Length = 848

 Score = 44.1 bits (22), Expect = 0.014
 Identities = 58/71 (81%)
 Strand = Plus / Minus

                                                                       
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
           ||||||||| || ||||||||  | ||||| || ||||| ||||  ||||| || |||||
Sbjct: 234 accatcatcagaaacatagcatgacactttgtcgacagggtaatccacagcaagaatgga 175

                      
Query: 543 caaaactgtgt 553
           |||||| ||||
Sbjct: 174 caaaacagtgt 164
>gb|CX607503.1|CX607503 ANR1_29_C09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
           ANR1_29_C09_A002 3', mRNA sequence
          Length = 768

 Score = 44.1 bits (22), Expect = 0.014
 Identities = 58/71 (81%)
 Strand = Plus / Minus

                                                                       
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
           ||||||||| || ||||||||  | ||||| || ||||| ||||  ||||| || |||||
Sbjct: 667 accatcatcagaaacatagcatgacactttgtcgacagggtaatccacagcaagaatgga 608

                      
Query: 543 caaaactgtgt 553
           |||||| ||||
Sbjct: 607 caaaacagtgt 597
  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 141,379
Number of Sequences: 832831
Number of extensions: 141379
Number of successful extensions: 37514
Number of sequences better than  0.5: 25
Number of HSP's better than  0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37456
Number of HSP's gapped (non-prelim): 53
length of query: 593
length of database: 491,359,669
effective HSP length: 19
effective length of query: 574
effective length of database: 475,535,880
effective search space: 272957595120
effective search space used: 272957595120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)