BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM14d12.yg.2.1
(593 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW434433.1|CW434433 fsbb001f150c03f0 Sorghum methylation... 210 1e-052
gb|CW116980.1|CW116980 104_492_11107412_148_34603_066 Sorgh... 159 4e-037
gb|CW116979.1|CW116979 104_492_11107412_116_34607_066 Sorgh... 103 2e-020
gb|BE598881.1|BE598881 PI1_83_C07.b1_A002 Pathogen induced ... 72 6e-011
gb|BG052201.1|BG052201 RHIZ2_7_D11.b1_A003 Rhizome2 (RHIZ2)... 72 6e-011
gb|BG102383.1|BG102383 RHIZ2_23_A10.b1_A003 Rhizome2 (RHIZ2... 72 6e-011
gb|BG241776.1|BG241776 RHIZ2_50_A08.b1_A003 Rhizome2 (RHIZ2... 72 6e-011
gb|BG465562.1|BG465562 RHIZ2_46_A10.b1_A003 Rhizome2 (RHIZ2... 72 6e-011
gb|BF655662.1|BF655662 FM1_47_C09.b1_A003 Floral-Induced Me... 68 1e-009
gb|BG948020.1|BG948020 IP1_8_D05.b1_A002 Immature pannicle ... 64 2e-008
gb|CF432727.1|CF432727 NIT1_18_C04.g1_A002 Nitrogen-deficie... 64 2e-008
gb|CL172543.1|CL172543 104_375_10890237_148_31796_141 Sorgh... 56 4e-006
gb|CD425359.1|CD425359 SA1_11_F01.g1_A002 Salicylic acid-tr... 56 4e-006
gb|BI245743.1|BI245743 IP1_63_G04.b1_A002 Immature pannicle... 50 2e-004
gb|BF481793.1|BF481793 FM1_20_D08.b1_A003 Floral-Induced Me... 48 0.001
gb|BF586580.1|BF586580 FM1_29_A05.b1_A003 Floral-Induced Me... 48 0.001
gb|CX621396.1|CX621396 GABR1_57_H04.g1_A002 GA- or brassino... 46 0.004
gb|CW502291.1|CW502291 fsbb001f298i22k0 Sorghum methylation... 44 0.014
gb|BE355233.1|BE355233 DG1_113_C09.b1_A002 Dark Grown 1 (DG... 44 0.014
gb|BF481056.1|BF481056 FM1_15_G12.b1_A003 Floral-Induced Me... 44 0.014
gb|BI643766.1|BI643766 IP1_56_G10.b1_A002 Immature pannicle... 44 0.014
gb|CD227355.1|CD227355 CCC1_50_D12.g1_A007 Callus culture/c... 44 0.014
gb|CN128155.1|CN128155 RHOH1_27_H08.b1_A002 Acid- and alkal... 44 0.014
gb|CN129331.1|CN129331 RHOH1_34_G09.g1_A002 Acid- and alkal... 44 0.014
gb|CX607503.1|CX607503 ANR1_29_C09.b1_A002 Anaerobic roots ... 44 0.014
>gb|CW434433.1|CW434433 fsbb001f150c03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150c03, DNA
sequence
Length = 625
Score = 210 bits (106), Expect = 1e-052
Identities = 133/142 (93%)
Strand = Plus / Plus
Query: 163 acctggaccattccggcatggtctcgaacattatttccatgccatggagctccttctggt 222
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 377 acctggaccatcccggcatggtctcgaacattatttccgtgccatggagctccttctggt 436
Query: 223 agggaccatcctccctcgggaactttgcgtgaattagcagctactgtgtttatgtgaacc 282
||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |
Sbjct: 437 agggaccatcctccctcgggaactttgcgtgaattagcaactactccgtttatacgaatc 496
Query: 283 ttaaattcttcgtattctctct 304
||||||||||| ||||||||||
Sbjct: 497 ttaaattcttcatattctctct 518
Score = 210 bits (106), Expect = 1e-052
Identities = 124/130 (95%)
Strand = Plus / Plus
Query: 39 caatgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtga 98
||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct: 56 caatgcattcaaggcaccagcctttttatgatgatcataaccaggccttttctctcgtga 115
Query: 99 aacatagaccaaccaaggcagcttatttccagcatcatccatgacacaatcattaccagt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 116 aacatagaccaaccaaggcagcttatttccagcatcatccatgacacaatcatggccagt 175
Query: 159 gatgacctgg 168
||||||||||
Sbjct: 176 gatgacctgg 185
>gb|CW116980.1|CW116980 104_492_11107412_148_34603_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107412, DNA
sequence
Length = 324
Score = 159 bits (80), Expect = 4e-037
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 163 acctggaccattccggcatggtctcgaacattatttccatgccatggagctccttctggt 222
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 237 acctggaccatcccggcatggtctcgaacattatttccgtgccatggagctccttctggt 296
Query: 223 agggaccatcctccctcgggaactttgc 250
||||||||||||||||||||||||||||
Sbjct: 297 agggaccatcctccctcgggaactttgc 324
Score = 73.8 bits (37), Expect = 2e-011
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 124 tttccagcatcatccatgacacaatcattaccagtgatgacctgg 168
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 tttccagcatcatccatgacacaatcatggccagtgatgacctgg 45
>gb|CW116979.1|CW116979 104_492_11107412_116_34607_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107412, DNA
sequence
Length = 287
Score = 103 bits (52), Expect = 2e-020
Identities = 72/81 (88%)
Strand = Plus / Minus
Query: 513 atcaacaggataatnnacagcnagtatggacaaaactgtgtntgcaataattaaaggagg 572
|||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||
Sbjct: 287 atcaacaggataatccacagccagtatggacaaaactgtgtttgcagtaattaaaggagg 228
Query: 573 ctcnnncattggatcaactgt 593
|| |||||||||||||||
Sbjct: 227 ttccttcattggatcaactgt 207
>gb|BE598881.1|BE598881 PI1_83_C07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 473
Score = 71.9 bits (36), Expect = 6e-011
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 358 tcaattttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacag 417
||||||||||||||||| ||||| || || |||| |||||| || |||| |||||||||
Sbjct: 187 tcaattttctgagcaaagtaccactctggggccctaggctctatgttgtacttcttacag 128
Query: 418 aagggaacccattttc 433
|| |||||||||||||
Sbjct: 127 aatggaacccattttc 112
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgcacgtcgttct 321
|||||||| |||||||||||||| || || ||||||
Sbjct: 259 aattcttcatattctctcttcatggcccggcgttct 224
>gb|BG052201.1|BG052201 RHIZ2_7_D11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 468
Score = 71.9 bits (36), Expect = 6e-011
Identities = 93/112 (83%)
Strand = Plus / Minus
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
||||| |||||||||||| ||||||| | ||||||| | | |||||||| ||||||
Sbjct: 135 cagaaaggaacccatttttttgcaaattcagatgtttcagacaacgcttcaaacgtaagc 76
Query: 475 attgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
||||||||||||||||| || ||||||||| | || || ||||| |||||||
Sbjct: 75 attgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataat 24
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 280 accttaaattcttcgtattctctcttcattgc 311
||||| ||||| ||||||||||||||||||||
Sbjct: 270 accttgaattcctcgtattctctcttcattgc 239
>gb|BG102383.1|BG102383 RHIZ2_23_A10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 491
Score = 71.9 bits (36), Expect = 6e-011
Identities = 93/112 (83%)
Strand = Plus / Minus
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
||||| |||||||||||| ||||||| | ||||||| | | |||||||| ||||||
Sbjct: 359 cagaaaggaacccatttttttgcaaattcagatgtttcagacaacgcttcaaacgtaagc 300
Query: 475 attgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
||||||||||||||||| || ||||||||| | || || ||||| |||||||
Sbjct: 299 attgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataat 248
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgc 311
||||| ||||||||||||||||||||
Sbjct: 488 aattcctcgtattctctcttcattgc 463
>gb|BG241776.1|BG241776 RHIZ2_50_A08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 429
Score = 71.9 bits (36), Expect = 6e-011
Identities = 93/112 (83%)
Strand = Plus / Minus
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
||||| |||||||||||| ||||||| | ||||||| | | |||||||| ||||||
Sbjct: 350 cagaaaggaacccatttttttgcaaattcagatgtttcagacaacgcttcaaacgtaagc 291
Query: 475 attgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
||||||||||||||||| || ||||||||| | || || ||||| |||||||
Sbjct: 290 attgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataat 239
>gb|BG465562.1|BG465562 RHIZ2_46_A10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 580
Score = 71.9 bits (36), Expect = 6e-011
Identities = 93/112 (83%)
Strand = Plus / Minus
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
||||| |||||||||||| ||||||| | ||||||| | | |||||||| ||||||
Sbjct: 350 cagaaaggaacccatttttttgcaaattcagatgtttcagacaacgcttcaaacgtaagc 291
Query: 475 attgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
||||||||||||||||| || ||||||||| | || || ||||| |||||||
Sbjct: 290 attgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataat 239
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 280 accttaaattcttcgtattctctcttcattgc 311
||||| ||||| ||||||||||||||||||||
Sbjct: 485 accttgaattcctcgtattctctcttcattgc 454
>gb|BF655662.1|BF655662 FM1_47_C09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 419
Score = 67.9 bits (34), Expect = 1e-009
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
||||| |||||||||||| ||||||| | ||||||| | | |||||||| ||||||
Sbjct: 291 cagaaaggaacccatttttttgcaaattcagatgtttcagacaacgcttcaaaggtaagc 232
Query: 475 attgcagcaccatcatccgacacatagcag 504
||||||||||||||||| || |||||||||
Sbjct: 231 attgcagcaccatcatcagaaacatagcag 202
>gb|BG948020.1|BG948020 IP1_8_D05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 205
Score = 63.9 bits (32), Expect = 2e-008
Identities = 92/112 (82%)
Strand = Plus / Minus
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
||||| ||||||||||| ||||||| | ||||||| | | ||||||||| || |||
Sbjct: 185 cagaaaggaacccatttctttgcaaattcagatgtttcagccaatgcttcaaatgtcagc 126
Query: 475 attgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
|| |||||||||||||| || |||||||| |||| |||||||| |||||||
Sbjct: 125 atggcagcaccatcatcagaaacatagcatgaaaccttatcaactggataat 74
>gb|CF432727.1|CF432727 NIT1_18_C04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_18_C04_A002 5', mRNA sequence
Length = 627
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || ||||| |||||||||||||| || |||||||| |||| ||||||||
Sbjct: 560 tgcttcaaatgtcagcatggcagcaccatcatcagaaacatagcatgaaaccttatcaac 501
Query: 519 aggataat 526
|||||||
Sbjct: 500 tggataat 493
>gb|CL172543.1|CL172543 104_375_10890237_148_31796_141 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890237, DNA
sequence
Length = 677
Score = 56.0 bits (28), Expect = 4e-006
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 39 caatgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtga 98
||||||||||| ||||||||||| |||||||| |||| || |||| |||||| | |||
Sbjct: 433 caatgcattcatagcaccagctttcttatgatggtcatagcctggccgtttctctcttga 374
Query: 99 aacatagaccaa 110
|||||| |||||
Sbjct: 373 aacataaaccaa 362
>gb|CD425359.1|CD425359 SA1_11_F01.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_11_F01_A002 5', mRNA sequence
Length = 591
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 475 attgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
||||| ||||||||||| || |||||||| |||| ||||||||||||||||
Sbjct: 591 attgcggcaccatcatcagaaacatagcaagaaaccttatcaacaggataat 540
>gb|BI245743.1|BI245743 IP1_63_G04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 455
Score = 50.1 bits (25), Expect = 2e-004
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 457 agtgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatca 516
||||| ||||| || ||||||||||| |||||||| || |||||||| | || |||||
Sbjct: 191 agtgcatcaaatgtcagcattgcagctccatcatcagatacatagcaagagaccttatcc 132
Query: 517 acaggataatnnacagcnagtatgga 542
||||| |||| ||||| || |||||
Sbjct: 131 acagggtaatccacagcaagaatgga 106
>gb|BF481793.1|BF481793 FM1_20_D08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 475
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 385 ggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgtgcaaa 440
||||||| ||| || || ||||||||||| || |||||||||||||| | ||||||
Sbjct: 249 ggagccctaggttcaatgttgtgtttcttgcaaaagggaacccatttccttgcaaa 194
Score = 48.1 bits (24), Expect = 0.001
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
||||||||||| | ||| || | ||| ||||| || |||||||| | ||||| ||||||
Sbjct: 174 gcttcaaaagtcaacatagctgaaccgtcatcagaaacatagcatgatactttgtcaaca 115
Query: 520 ggataatnnacagcnagtatggacaaaactgtgtntgcaataattaaaggaggctc 575
|| |||| ||||| || ||||||| || |||| ||| |||||| |||||||||
Sbjct: 114 gggtaatccacagcaagaatggacaggacagtgttggcagtaattagaggaggctc 59
>gb|BF586580.1|BF586580 FM1_29_A05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 398
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 385 ggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgtgcaaa 440
||||||| ||| || || ||||||||||| || |||||||||||||| | ||||||
Sbjct: 337 ggagccctaggttcaatgttgtgtttcttgcaaaagggaacccatttccttgcaaa 282
Score = 48.1 bits (24), Expect = 0.001
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
||||||||||| | ||| || | ||| ||||| || |||||||| | ||||| ||||||
Sbjct: 262 gcttcaaaagtcaacatagctgaaccgtcatcagaaacatagcatgatactttgtcaaca 203
Query: 520 ggataatnnacagcnagtatggacaaaactgtgtntgcaataattaaaggaggctc 575
|| |||| ||||| || ||||||| || |||| ||| |||||| |||||||||
Sbjct: 202 gggtaatccacagcaagaatggacaggacagtgttggcagtaattagaggaggctc 147
>gb|CX621396.1|CX621396 GABR1_57_H04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_57_H04_A002 5', mRNA sequence
Length = 723
Score = 46.1 bits (23), Expect = 0.004
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 39 caatgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtga 98
||||||||||| ||||||||||| |||||||| |||| || |||| |||||| | |||
Sbjct: 63 caatgcattcatagcaccagctttcttatgatggtcatagcctggccgtttctctcttga 4
Query: 99 aac 101
|||
Sbjct: 3 aac 1
>gb|CW502291.1|CW502291 fsbb001f298i22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f298i22, DNA
sequence
Length = 689
Score = 44.1 bits (22), Expect = 0.014
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
||||||||| || |||||||| | ||||| || ||||| |||| ||||| || |||||
Sbjct: 661 accatcatcagaaacatagcatgacactttgtcgacagggtaatccacagcaagaatgga 602
Query: 543 caaaactgtgt 553
|||||| ||||
Sbjct: 601 caaaacagtgt 591
>gb|BE355233.1|BE355233 DG1_113_C09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 494
Score = 44.1 bits (22), Expect = 0.014
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
||||||||| || |||||||| | ||||| || ||||| |||| ||||| || |||||
Sbjct: 205 accatcatcagaaacatagcatgacactttgtcgacagggtaatccacagcaagaatgga 146
Query: 543 caaaactgtgt 553
|||||| ||||
Sbjct: 145 caaaacagtgt 135
>gb|BF481056.1|BF481056 FM1_15_G12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 540
Score = 44.1 bits (22), Expect = 0.014
Identities = 73/90 (81%)
Strand = Plus / Minus
Query: 39 caatgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtga 98
||||||||||| |||||||| || |||||||| |||| || |||| ||| || | |||
Sbjct: 455 caatgcattcatagcaccagccttcttatgatggtcatagcctggccgtttttctcttga 396
Query: 99 aacatagaccaaccaaggcagcttatttcc 128
||| || ||||| | |||||||| ||||||
Sbjct: 395 aacgtaaaccaatcgaggcagctcatttcc 366
Score = 42.1 bits (21), Expect = 0.057
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 279 aaccttaaattcttcgtattctctcttcattgc 311
|||||| ||||| ||||| ||||||||||||||
Sbjct: 215 aaccttgaattcctcgtactctctcttcattgc 183
Score = 42.1 bits (21), Expect = 0.057
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
||||| ||||||||||| ||||||| | ||||||| | | ||||||||| || |||
Sbjct: 79 cagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaatgtcagc 20
Query: 475 attgcagcaccatcatc 491
|| ||||||||||||||
Sbjct: 19 atggcagcaccatcatc 3
>gb|BI643766.1|BI643766 IP1_56_G10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 44.1 bits (22), Expect = 0.014
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
||||||||| || |||||||| | ||||| || ||||| |||| ||||| || |||||
Sbjct: 275 accatcatcagaaacatagcatgacactttgtcgacagggtaatccacagcaagaatgga 216
Query: 543 caaaactgtgt 553
|||||| ||||
Sbjct: 215 caaaacagtgt 205
>gb|CD227355.1|CD227355 CCC1_50_D12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_50_D12_A007 5', mRNA sequence
Length = 669
Score = 44.1 bits (22), Expect = 0.014
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
||||||||| || |||||||| | ||||| || ||||| |||| ||||| || |||||
Sbjct: 258 accatcatcagaaacatagcatgacactttgtcgacagggtaatccacagcaagaatgga 199
Query: 543 caaaactgtgt 553
|||||| ||||
Sbjct: 198 caaaacagtgt 188
>gb|CN128155.1|CN128155 RHOH1_27_H08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_H08_A002 3', mRNA sequence
Length = 783
Score = 44.1 bits (22), Expect = 0.014
Identities = 73/90 (81%)
Strand = Plus / Minus
Query: 39 caatgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtga 98
||||||||||| |||||||| || |||||||| |||| || |||| ||| || | |||
Sbjct: 338 caatgcattcatagcaccagccttcttatgatggtcatagcctggccgtttttctcttga 279
Query: 99 aacatagaccaaccaaggcagcttatttcc 128
||| || ||||| | |||||||| ||||||
Sbjct: 278 aacgtaaaccaatcgaggcagctcatttcc 249
Score = 42.1 bits (21), Expect = 0.057
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 279 aaccttaaattcttcgtattctctcttcattgc 311
|||||| ||||| ||||| ||||||||||||||
Sbjct: 98 aaccttgaattcctcgtactctctcttcattgc 66
>gb|CN129331.1|CN129331 RHOH1_34_G09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_G09_A002 5', mRNA sequence
Length = 848
Score = 44.1 bits (22), Expect = 0.014
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
||||||||| || |||||||| | ||||| || ||||| |||| ||||| || |||||
Sbjct: 234 accatcatcagaaacatagcatgacactttgtcgacagggtaatccacagcaagaatgga 175
Query: 543 caaaactgtgt 553
|||||| ||||
Sbjct: 174 caaaacagtgt 164
>gb|CX607503.1|CX607503 ANR1_29_C09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_C09_A002 3', mRNA sequence
Length = 768
Score = 44.1 bits (22), Expect = 0.014
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
||||||||| || |||||||| | ||||| || ||||| |||| ||||| || |||||
Sbjct: 667 accatcatcagaaacatagcatgacactttgtcgacagggtaatccacagcaagaatgga 608
Query: 543 caaaactgtgt 553
|||||| ||||
Sbjct: 607 caaaacagtgt 597
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 141,379
Number of Sequences: 832831
Number of extensions: 141379
Number of successful extensions: 37514
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37456
Number of HSP's gapped (non-prelim): 53
length of query: 593
length of database: 491,359,669
effective HSP length: 19
effective length of query: 574
effective length of database: 475,535,880
effective search space: 272957595120
effective search space used: 272957595120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)