BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL24b11.yg.2.1
(520 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL157592.1|CL157592 104_345_10783695_116_31478_255 Sorgh... 228 4e-058
gb|CL197184.1|CL197184 104_424_10943572_114_32383_016 Sorgh... 228 4e-058
gb|CW082277.1|CW082277 104_424_10943572_114_32334_016 Sorgh... 228 4e-058
gb|CL157591.1|CL157591 104_345_10783695_114_31477_255 Sorgh... 224 6e-057
gb|BF586839.1|BF586839 FM1_30_H12.g1_A003 Floral-Induced Me... 151 8e-035
gb|CW481819.1|CW481819 fsbb001f241j14k0 Sorghum methylation... 145 5e-033
gb|AW283377.1|AW283377 LG1_223_D12.g1_A002 Light Grown 1 (L... 94 2e-017
gb|BG947765.1|BG947765 IP1_8_G12.g1_A002 Immature pannicle ... 94 2e-017
gb|BG948058.1|BG948058 IP1_8_G12.b1_A002 Immature pannicle ... 94 2e-017
gb|BI074550.1|BI074550 IP1_16_A11.g1_A002 Immature pannicle... 94 2e-017
gb|BI074863.1|BI074863 IP1_16_A11.b1_A002 Immature pannicle... 88 9e-016
gb|CF072959.1|CF072959 FE1_27_D01.b1_A002 Iron-deficient se... 86 4e-015
gb|CX608205.1|CX608205 ANR1_37_F12.b1_A002 Anaerobic roots ... 86 4e-015
gb|CL167974.1|CL167974 104_365_10810478_114_31804_158 Sorgh... 78 9e-013
gb|CL167975.1|CL167975 104_365_10810478_116_31805_158 Sorgh... 78 9e-013
gb|CW031320.1|CW031320 104_259_10500738_116_30398 Sorghum m... 78 9e-013
gb|CW235188.1|CW235188 104_690_11214849_116_37409_041 Sorgh... 78 9e-013
gb|CW235189.1|CW235189 104_690_11214849_148_37413_041 Sorgh... 78 9e-013
gb|CW315001.1|CW315001 104_805_11472128_148_35822_018 Sorgh... 78 9e-013
gb|CW413531.1|CW413531 fsbb001f112l18f0 Sorghum methylation... 78 9e-013
gb|CF429881.1|CF429881 PH1_25_C04.b1_A002 Phosphorous-defic... 78 9e-013
gb|CF433456.1|CF433456 NIT1_27_E11.b1_A002 Nitrogen-deficie... 78 9e-013
gb|BE357339.1|BE357339 DG1_148_D12.g1_A002 Dark Grown 1 (DG... 70 2e-010
gb|BF420934.1|BF420934 FM1_5_B03.g1_A003 Floral-Induced Mer... 68 9e-010
gb|CL197185.1|CL197185 104_424_10943572_116_32338_016 Sorgh... 60 2e-007
gb|BG557221.1|BG557221 EM1_44_B10.g1_A002 Embryo 1 (EM1) So... 42 0.050
gb|BI099525.1|BI099525 IP1_43_D01.g1_A002 Immature pannicle... 42 0.050
gb|BI245815.1|BI245815 IP1_64_G05.g1_A002 Immature pannicle... 42 0.050
gb|CF071834.1|CF071834 FE1_19_D03.b1_A002 Iron-deficient se... 42 0.050
gb|CN127278.1|CN127278 RHOH1_22_C03.b1_A002 Acid- and alkal... 42 0.050
>gb|CL157592.1|CL157592 104_345_10783695_116_31478_255 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783695, DNA
sequence
Length = 738
Score = 228 bits (115), Expect = 4e-058
Identities = 216/249 (86%), Gaps = 3/249 (1%)
Strand = Plus / Minus
Query: 244 ctgtatcttctcctacctccctcactcacaatccaagccacagacctccagaacaggtcc 303
||||||||||||| || ||||| ||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 453 ctgtatcttctcc---ctacctcattcacattccaaaccacaaacctctagaactgggcc 397
Query: 304 atcaaacttggtggcgaaggggctcacccggacccacaaaagagagagtatggatgccag 363
|||||||||||||||||| || || || ||||||||||||||||| | ||||||||| ||
Sbjct: 396 atcaaacttggtggcgaacggacttacacggacccacaaaagagacaatatggatgctag 337
Query: 364 tagcattgacagcacaacgacaacggtcggcaccctgccctgcctgccgatcacgccctt 423
||||| ||||| ||||| |||| |||||||||||||| |||| |||| |||||||||||
Sbjct: 336 tagcactgacaaaacaacaacaatggtcggcaccctgctctgcttgccaatcacgccctt 277
Query: 424 gaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagcagcgg 483
||||||||||||||| ||||||| |||||||||||||||||||||||||| | ||| ||
Sbjct: 276 gaggaacgggtggagatggaggataacccagaaggagaagaacagcttgccaatcagtgg 217
Query: 484 gccccaggc 492
||||||||
Sbjct: 216 cccccaggc 208
Score = 93.7 bits (47), Expect = 2e-017
Identities = 87/98 (88%), Gaps = 3/98 (3%)
Strand = Plus / Minus
Query: 113 cttcactaaaacctacgctaatcagcggtcaccaaagaacatagaaaacgttgaatagct 172
||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||| ||
Sbjct: 581 cttcactaaaacctatgctaaccagcgatcaccaaagaatatagaaaa-tttgaataact 523
Query: 173 aacgaaagaatagaacc--ctctcactactctagcact 208
|| ||||||||||| || |||||||||||||||||||
Sbjct: 522 aatgaaagaatagagccctctctcactactctagcact 485
Score = 60.0 bits (30), Expect = 2e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 33 tctattgtgcctgtctcaatatctacaaca 62
||||||||||||||||||||||||||||||
Sbjct: 680 tctattgtgcctgtctcaatatctacaaca 651
>gb|CL197184.1|CL197184 104_424_10943572_114_32383_016 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943572, DNA
sequence
Length = 704
Score = 228 bits (115), Expect = 4e-058
Identities = 216/249 (86%), Gaps = 3/249 (1%)
Strand = Plus / Minus
Query: 244 ctgtatcttctcctacctccctcactcacaatccaagccacagacctccagaacaggtcc 303
||||||||||||| || ||||| ||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 340 ctgtatcttctcc---ctacctcattcacattccaaaccacaaacctctagaactgggcc 284
Query: 304 atcaaacttggtggcgaaggggctcacccggacccacaaaagagagagtatggatgccag 363
|||||||||||||||||| || || || ||||||||||||||||| | ||||||||| ||
Sbjct: 283 atcaaacttggtggcgaacggacttacacggacccacaaaagagacaatatggatgctag 224
Query: 364 tagcattgacagcacaacgacaacggtcggcaccctgccctgcctgccgatcacgccctt 423
||||| ||||| ||||| |||| |||||||||||||| |||| |||| |||||||||||
Sbjct: 223 tagcactgacaaaacaacaacaatggtcggcaccctgctctgcttgccaatcacgccctt 164
Query: 424 gaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagcagcgg 483
||||||||||||||| ||||||| |||||||||||||||||||||||||| | ||| ||
Sbjct: 163 gaggaacgggtggagatggaggataacccagaaggagaagaacagcttgccaatcagtgg 104
Query: 484 gccccaggc 492
||||||||
Sbjct: 103 cccccaggc 95
Score = 93.7 bits (47), Expect = 2e-017
Identities = 87/98 (88%), Gaps = 3/98 (3%)
Strand = Plus / Minus
Query: 113 cttcactaaaacctacgctaatcagcggtcaccaaagaacatagaaaacgttgaatagct 172
||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||| ||
Sbjct: 468 cttcactaaaacctatgctaaccagcgatcaccaaagaatatagaaaa-tttgaataact 410
Query: 173 aacgaaagaatagaacc--ctctcactactctagcact 208
|| ||||||||||| || |||||||||||||||||||
Sbjct: 409 aatgaaagaatagagccctctctcactactctagcact 372
Score = 60.0 bits (30), Expect = 2e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 33 tctattgtgcctgtctcaatatctacaaca 62
||||||||||||||||||||||||||||||
Sbjct: 567 tctattgtgcctgtctcaatatctacaaca 538
>gb|CW082277.1|CW082277 104_424_10943572_114_32334_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943572, DNA
sequence
Length = 668
Score = 228 bits (115), Expect = 4e-058
Identities = 216/249 (86%), Gaps = 3/249 (1%)
Strand = Plus / Minus
Query: 244 ctgtatcttctcctacctccctcactcacaatccaagccacagacctccagaacaggtcc 303
||||||||||||| || ||||| ||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 339 ctgtatcttctcc---ctacctcattcacattccaaaccacaaacctctagaactgggcc 283
Query: 304 atcaaacttggtggcgaaggggctcacccggacccacaaaagagagagtatggatgccag 363
|||||||||||||||||| || || || ||||||||||||||||| | ||||||||| ||
Sbjct: 282 atcaaacttggtggcgaacggacttacacggacccacaaaagagacaatatggatgctag 223
Query: 364 tagcattgacagcacaacgacaacggtcggcaccctgccctgcctgccgatcacgccctt 423
||||| ||||| ||||| |||| |||||||||||||| |||| |||| |||||||||||
Sbjct: 222 tagcactgacaaaacaacaacaatggtcggcaccctgctctgcttgccaatcacgccctt 163
Query: 424 gaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagcagcgg 483
||||||||||||||| ||||||| |||||||||||||||||||||||||| | ||| ||
Sbjct: 162 gaggaacgggtggagatggaggataacccagaaggagaagaacagcttgccaatcagtgg 103
Query: 484 gccccaggc 492
||||||||
Sbjct: 102 cccccaggc 94
Score = 93.7 bits (47), Expect = 2e-017
Identities = 87/98 (88%), Gaps = 3/98 (3%)
Strand = Plus / Minus
Query: 113 cttcactaaaacctacgctaatcagcggtcaccaaagaacatagaaaacgttgaatagct 172
||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||| ||
Sbjct: 467 cttcactaaaacctatgctaaccagcgatcaccaaagaatatagaaaa-tttgaataact 409
Query: 173 aacgaaagaatagaacc--ctctcactactctagcact 208
|| ||||||||||| || |||||||||||||||||||
Sbjct: 408 aatgaaagaatagagccctctctcactactctagcact 371
Score = 60.0 bits (30), Expect = 2e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 33 tctattgtgcctgtctcaatatctacaaca 62
||||||||||||||||||||||||||||||
Sbjct: 566 tctattgtgcctgtctcaatatctacaaca 537
>gb|CL157591.1|CL157591 104_345_10783695_114_31477_255 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783695, DNA
sequence
Length = 773
Score = 224 bits (113), Expect = 6e-057
Identities = 202/231 (87%), Gaps = 3/231 (1%)
Strand = Plus / Plus
Query: 244 ctgtatcttctcctacctccctcactcacaatccaagccacagacctccagaacaggtcc 303
||||||||||||| || ||||| ||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 542 ctgtatcttctcc---ctacctcattcacattccaaaccacaaacctctagaactgggcc 598
Query: 304 atcaaacttggtggcgaaggggctcacccggacccacaaaagagagagtatggatgccag 363
|||||||||||||||||| || || || ||||||||||||||||| | ||||||||| ||
Sbjct: 599 atcaaacttggtggcgaacggacttacacggacccacaaaagagacaatatggatgctag 658
Query: 364 tagcattgacagcacaacgacaacggtcggcaccctgccctgcctgccgatcacgccctt 423
||||| ||||| ||||| |||| |||||||||||||| |||| |||| |||||||||||
Sbjct: 659 tagcactgacaaaacaacaacaatggtcggcaccctgctctgcttgccaatcacgccctt 718
Query: 424 gaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgcc 474
||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 719 gaggaacgggtggagatggaggataacccagaaggagaagaacagcttgcc 769
Score = 93.7 bits (47), Expect = 2e-017
Identities = 87/98 (88%), Gaps = 3/98 (3%)
Strand = Plus / Plus
Query: 113 cttcactaaaacctacgctaatcagcggtcaccaaagaacatagaaaacgttgaatagct 172
||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||| ||
Sbjct: 414 cttcactaaaacctatgctaaccagcgatcaccaaagaatatagaaaa-tttgaataact 472
Query: 173 aacgaaagaatagaacc--ctctcactactctagcact 208
|| ||||||||||| || |||||||||||||||||||
Sbjct: 473 aatgaaagaatagagccctctctcactactctagcact 510
Score = 60.0 bits (30), Expect = 2e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 33 tctattgtgcctgtctcaatatctacaaca 62
||||||||||||||||||||||||||||||
Sbjct: 315 tctattgtgcctgtctcaatatctacaaca 344
>gb|BF586839.1|BF586839 FM1_30_H12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 289
Score = 151 bits (76), Expect = 8e-035
Identities = 157/184 (85%)
Strand = Plus / Minus
Query: 263 cctcactcacaatccaagccacagacctccagaacaggtccatcaaacttggtggcgaag 322
||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||||||||||||
Sbjct: 191 cctcattcacattccaaaccacaaacctctagaactgggccatcaaacttggtggcgaac 132
Query: 323 gggctcacccggacccacaaaagagagagtatggatgccagtagcattgacagcacaacg 382
|| || || ||||||||||||||| | | ||||||||| |||| || ||||| |||||
Sbjct: 131 ggacttacacggacccacaaaagatacaatatggatgctagtatcactgacaaaacaaca 72
Query: 383 acaacggtcggcaccctgccctgcctgccgatcacgcccttgaggaacgggtggaggtgg 442
|||| |||| ||||||||| |||| |||| ||||||||||||||||||||||||| |||
Sbjct: 71 acaatggtccgcaccctgctctgcatgccaatcacgcccttgaggaacgggtggatatgg 12
Query: 443 agga 446
||||
Sbjct: 11 agga 8
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Minus
Query: 162 gttgaatagctaacgaaagaatagaacc--ctctcactactctagcact 208
|||||||| |||| ||||||||||| || |||||||||||||| ||||
Sbjct: 286 gttgaataactaatgaaagaatagagccctctctcactactctatcact 238
>gb|CW481819.1|CW481819 fsbb001f241j14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f241j14, DNA
sequence
Length = 573
Score = 145 bits (73), Expect = 5e-033
Identities = 124/141 (87%)
Strand = Plus / Plus
Query: 352 tatggatgccagtagcattgacagcacaacgacaacggtcggcaccctgccctgcctgcc 411
||||||||| |||| || ||||| ||||| |||| |||||||||||||| |||| ||||
Sbjct: 9 tatggatgctagtatcactgacaaaacaacaacaatggtcggcaccctgctctgcttgcc 68
Query: 412 gatcacgcccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 69 aatcacgcccttgaggaacgggtggagatggaggataacccagaaggagaagaacagctt 128
Query: 472 gccgagcagcgggccccaggc 492
||| | ||| || ||||||||
Sbjct: 129 gccaatcagtggcccccaggc 149
>gb|AW283377.1|AW283377 LG1_223_D12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 93.7 bits (47), Expect = 2e-017
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 403 ctgcctgccgatcacgcccttgaggaacgggtggaggtggaggacgacccagaaggagaa 462
|||||| || |||| ||||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 218 ctgcctccccatcaggcccttgaggaacgggtacaggtggacgatgacccagaaggagaa 159
Query: 463 gaacagcttgccgagcagcgggcccca 489
||| |||||||||| |||||| |||||
Sbjct: 158 gaagagcttgccgaacagcggccccca 132
>gb|BG947765.1|BG947765 IP1_8_G12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 93.7 bits (47), Expect = 2e-017
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 403 ctgcctgccgatcacgcccttgaggaacgggtggaggtggaggacgacccagaaggagaa 462
|||||| || |||| ||||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 233 ctgcctccccatcaggcccttgaggaacgggtacaggtggacgatgacccagaaggagaa 174
Query: 463 gaacagcttgccgagcagcgggcccca 489
||| |||||||||| |||||| |||||
Sbjct: 173 gaagagcttgccgaacagcggccccca 147
>gb|BG948058.1|BG948058 IP1_8_G12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 93.7 bits (47), Expect = 2e-017
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 403 ctgcctgccgatcacgcccttgaggaacgggtggaggtggaggacgacccagaaggagaa 462
|||||| || |||| ||||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 511 ctgcctccccatcaggcccttgaggaacgggtacaggtggacgatgacccagaaggagaa 452
Query: 463 gaacagcttgccgagcagcgggcccca 489
||| |||||||||| |||||| |||||
Sbjct: 451 gaagagcttgccgaacagcggccccca 425
>gb|BI074550.1|BI074550 IP1_16_A11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 93.7 bits (47), Expect = 2e-017
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 403 ctgcctgccgatcacgcccttgaggaacgggtggaggtggaggacgacccagaaggagaa 462
|||||| || |||| ||||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 235 ctgcctccccatcaggcccttgaggaacgggtacaggtggacgatgacccagaaggagaa 176
Query: 463 gaacagcttgccgagcagcgggcccca 489
||| |||||||||| |||||| |||||
Sbjct: 175 gaagagcttgccgaacagcggccccca 149
>gb|BI074863.1|BI074863 IP1_16_A11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 497
Score = 87.7 bits (44), Expect = 9e-016
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 418 gcccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgag 477
||||||||||||||||| ||||||| || |||||||||||||||||| ||||||||||
Sbjct: 496 gcccttgaggaacgggtacaggtggacgatgacccagaaggagaagaagagcttgccgaa 437
Query: 478 cagcgggcccca 489
|||||| |||||
Sbjct: 436 cagcggccccca 425
>gb|CF072959.1|CF072959 FE1_27_D01.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_27_D01_A002 3', mRNA sequence
Length = 574
Score = 85.7 bits (43), Expect = 4e-015
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 403 ctgcctgccgatcacgcccttgaggaacgggtggaggtggaggacgacccagaaggagaa 462
|||||| || |||| | ||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 229 ctgcctccccatcagggccttgaggaacgggtacaggtggacgatgacccagaaggagaa 170
Query: 463 gaacagcttgccgagcagcgggcccca 489
||| |||||||||| |||||| |||||
Sbjct: 169 gaagagcttgccgaacagcggccccca 143
>gb|CX608205.1|CX608205 ANR1_37_F12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_F12_A002 3', mRNA sequence
Length = 528
Score = 85.7 bits (43), Expect = 4e-015
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 403 ctgcctgccgatcacgcccttgaggaacgggtggaggtggaggacgacccagaaggagaa 462
|||||| || |||| | ||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 159 ctgcctccccatcagggccttgaggaacgggtacaggtggacgatgacccagaaggagaa 100
Query: 463 gaacagcttgccgagcagcgggcccca 489
||| |||||||||| |||||| |||||
Sbjct: 99 gaagagcttgccgaacagcggccccca 73
>gb|CL167974.1|CL167974 104_365_10810478_114_31804_158 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810478, DNA
sequence
Length = 777
Score = 77.8 bits (39), Expect = 9e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || ||||||||| | |||||| ||||||||||
Sbjct: 465 cccttgaggaacgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaag 406
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 405 agcgggcccca 395
>gb|CL167975.1|CL167975 104_365_10810478_116_31805_158 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810478, DNA
sequence
Length = 638
Score = 77.8 bits (39), Expect = 9e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || ||||||||| | |||||| ||||||||||
Sbjct: 504 cccttgaggaacgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaag 563
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 564 agcgggcccca 574
>gb|CW031320.1|CW031320 104_259_10500738_116_30398 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500738, DNA
sequence
Length = 854
Score = 77.8 bits (39), Expect = 9e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || ||||||||| | |||||| ||||||||||
Sbjct: 272 cccttgaggaacgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaag 331
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 332 agcgggcccca 342
>gb|CW235188.1|CW235188 104_690_11214849_116_37409_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214849, DNA
sequence
Length = 601
Score = 77.8 bits (39), Expect = 9e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || ||||||||| | |||||| ||||||||||
Sbjct: 191 cccttgaggaacgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaag 250
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 251 agcgggcccca 261
>gb|CW235189.1|CW235189 104_690_11214849_148_37413_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214849, DNA
sequence
Length = 686
Score = 77.8 bits (39), Expect = 9e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || ||||||||| | |||||| ||||||||||
Sbjct: 671 cccttgaggaacgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaag 612
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 611 agcgggcccca 601
>gb|CW315001.1|CW315001 104_805_11472128_148_35822_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472128, DNA
sequence
Length = 685
Score = 77.8 bits (39), Expect = 9e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || ||||||||| | |||||| ||||||||||
Sbjct: 425 cccttgaggaacgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaag 366
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 365 agcgggcccca 355
>gb|CW413531.1|CW413531 fsbb001f112l18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f112l18, DNA
sequence
Length = 427
Score = 77.8 bits (39), Expect = 9e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || ||||||||| | |||||| ||||||||||
Sbjct: 328 cccttgaggaacgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaag 269
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 268 agcgggcccca 258
>gb|CF429881.1|CF429881 PH1_25_C04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_C04_A002 3', mRNA sequence
Length = 553
Score = 77.8 bits (39), Expect = 9e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || ||||||||| | |||||| ||||||||||
Sbjct: 225 cccttgaggaacgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaag 166
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 165 agcgggcccca 155
>gb|CF433456.1|CF433456 NIT1_27_E11.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_27_E11_A002 3', mRNA sequence
Length = 553
Score = 77.8 bits (39), Expect = 9e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || ||||||||| | |||||| ||||||||||
Sbjct: 116 cccttgaggaacgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaag 57
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 56 agcgggcccca 46
>gb|BE357339.1|BE357339 DG1_148_D12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 505
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || |||||| || | |||||| ||||||||||
Sbjct: 463 cccttgaggaacgggtagaggtggacgatgacccataatgcgaagaagagcttgccgaag 404
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 403 agcgggcccca 393
>gb|BF420934.1|BF420934 FM1_5_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 259
Score = 67.9 bits (34), Expect = 9e-010
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccga 476
|||||||||||||||| |||||||| || ||||||||| | |||||| ||||||||||
Sbjct: 107 cccttgaggaacgggtagaggtggacgatgacccagaatgcgaagaagagcttgccga 50
>gb|CL197185.1|CL197185 104_424_10943572_116_32338_016 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943572, DNA
sequence
Length = 664
Score = 60.0 bits (30), Expect = 2e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 33 tctattgtgcctgtctcaatatctacaaca 62
||||||||||||||||||||||||||||||
Sbjct: 565 tctattgtgcctgtctcaatatctacaaca 594
>gb|BG557221.1|BG557221 EM1_44_B10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 42.1 bits (21), Expect = 0.050
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 449 acccagaaggagaagaacagcttgccgagcagcgggcccca 489
|||||||||| |||||| |||||||| | |||||||||||
Sbjct: 182 acccagaaggcgaagaagagcttgccaaagagcgggcccca 142
>gb|BI099525.1|BI099525 IP1_43_D01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 203
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtgga 443
|||||||||||||||| ||||||||
Sbjct: 26 cccttgaggaacgggtagaggtgga 2
>gb|BI245815.1|BI245815 IP1_64_G05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 616
Score = 42.1 bits (21), Expect = 0.050
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 449 acccagaaggagaagaacagcttgccgagcagcgggcccca 489
|||||||||| |||||| |||||||| | |||||||||||
Sbjct: 166 acccagaaggcgaagaagagcttgccaaagagcgggcccca 126
>gb|CF071834.1|CF071834 FE1_19_D03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_19_D03_A002 3', mRNA sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.050
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 449 acccagaaggagaagaacagcttgccgagcagcgggcccca 489
|||||||||| |||||| |||||||| | |||||||||||
Sbjct: 191 acccagaaggcgaagaagagcttgccaaagagcgggcccca 151
>gb|CN127278.1|CN127278 RHOH1_22_C03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_C03_A002 3', mRNA sequence
Length = 857
Score = 42.1 bits (21), Expect = 0.050
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 449 acccagaaggagaagaacagcttgccgagcagcgggcccca 489
|||||||||| |||||| |||||||| | |||||||||||
Sbjct: 340 acccagaaggcgaagaagagcttgccaaagagcgggcccca 300
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,876
Number of Sequences: 832831
Number of extensions: 136876
Number of successful extensions: 38499
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38446
Number of HSP's gapped (non-prelim): 40
length of query: 520
length of database: 491,359,669
effective HSP length: 19
effective length of query: 501
effective length of database: 475,535,880
effective search space: 238243475880
effective search space used: 238243475880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)