BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH17d04.yg.2.1
(637 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF770757.1|CF770757 DSBF1_9_C11.g1_A010 Drought-stressed... 807 0.0
gb|CF770670.1|CF770670 DSBF1_9_C11.b1_A010 Drought-stressed... 581 e-164
gb|CW249386.1|CW249386 104_711_11222816_116_35044_030 Sorgh... 262 4e-068
gb|CW088299.1|CW088299 104_433_10948100_116_32576_076 Sorgh... 254 9e-066
gb|CL187618.1|CL187618 104_403_10901012_116_32464_074 Sorgh... 72 7e-011
gb|CW476677.1|CW476677 fsbb001f233k08f0 Sorghum methylation... 72 7e-011
gb|CW476678.1|CW476678 fsbb001f233k08k0 Sorghum methylation... 72 7e-011
>gb|CF770757.1|CF770757 DSBF1_9_C11.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_C11_A010 3', mRNA sequence
Length = 729
Score = 807 bits (407), Expect = 0.0
Identities = 480/505 (95%)
Strand = Plus / Minus
Query: 1 acaaagcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccc 60
|||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 505 acaaagcctgacgttgtgttagaccgaccgggtaaattctgtatactttcaggtcatccc 446
Query: 61 cacctctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaa 120
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 cacctctaatactcggtggtctttcatccttccatacaggaacgtgattgagggacctaa 386
Query: 121 atttaccgagcactgcggattccaaggctcccagagttaactggcctgatctcatgtaaa 180
|||||| ||||||||| |||||||||||||||||||||||| |||| |||||||| ||||
Sbjct: 385 atttactgagcactgcagattccaaggctcccagagttaaccggcccgatctcatataaa 326
Query: 181 tgctctctgacttaaaccgccctctctctcggataaataagtggtaaattgttccctttt 240
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 325 tgctctctgacttaaaccgccctctttctcggataaataagtggtaaactgttccctttt 266
Query: 241 tggtggaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaatgga 300
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 265 tgctggaacagctacaaggacgatttgtaaattttggagtcatttcctcctttaactgga 206
Query: 301 tcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaataa 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 tcttggtagcaatatgtatacaaagacgacaagatgaatgaactgctgccatgtcaataa 146
Query: 361 gagctttgaaagaatcggatggaccatcatacttccacctcaaagattgattgaaggcat 420
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gggctttgaaagaatcagagggaccatcatacttccacctcaaagattgattgaaggcat 86
Query: 421 cagggtttgaagcaatatttttcattgtcttagcaactgaagcaacatcatcaagctnnt 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 85 caggatttgaagcaatatttttcattgtcttagcaactgaagcaacatcatcaagttcct 26
Query: 481 taatatgtaatattgcgccttctcc 505
|||||||||||||||| ||||||||
Sbjct: 25 taatatgtaatattgcaccttctcc 1
>gb|CF770670.1|CF770670 DSBF1_9_C11.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_C11_A010 5', mRNA sequence
Length = 641
Score = 581 bits (293), Expect = e-164
Identities = 348/369 (94%)
Strand = Plus / Minus
Query: 215 aaataagtggtaaattgttccctttttggtggaacagctacaaggacgatttgtaaattt 274
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 641 aaataagtggtaaactgttccctttttgctggaacagctacaaggacgatttgtaaattt 582
Query: 275 tggagtcctttcctcctttaaatggatcttggtagcaatatgtatacaaagacgacaaga 334
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tggagtcatttcctcctttaactggatcttggtagcaatatgtatacaaagacgacaaga 522
Query: 335 tgaatgaaccgctgccatgtcaataagagctttgaaagaatcggatggaccatcatactt 394
||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 521 tgaatgaactgctgccatgtcaataagggctttgaaagaatcagagggaccatcatactt 462
Query: 395 ccacctcaaagattgattgaaggcatcagggtttgaagcaatatttttcattgtcttagc 454
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 461 ccacctcaaagattgattgaaggcatcaggatttgaagcaatatttttcattgtcttagc 402
Query: 455 aactgaagcaacatcatcaagctnnttaatatgtaatattgcgccttctcccggagnaaa 514
||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| |||
Sbjct: 401 aactgaagcaacatcatcaagttccttaatatgtaatattgcaccttctcccggagaaaa 342
Query: 515 ctcttgaatatttggagcaccaacaacaaccggaatagaacctnnnactantnactgaaa 574
|||||||||||||||||||||||||||||| |||||||||||| || | | |||||||
Sbjct: 341 ctcttgaatatttggagcaccaacaacaactggaatagaacctgctaccagtgactgaaa 282
Query: 575 aaacttttc 583
|||||||||
Sbjct: 281 aaacttttc 273
>gb|CW249386.1|CW249386 104_711_11222816_116_35044_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222816, DNA
sequence
Length = 668
Score = 262 bits (132), Expect = 4e-068
Identities = 162/172 (94%)
Strand = Plus / Minus
Query: 1 acaaagcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccc 60
|||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 306 acaaagcctgacgttgtgttagaccgaccgggtaaattctgtatactttcaggtcatccc 247
Query: 61 cacctctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaa 120
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 246 cacctctaatactcggtggtctttcatccttccatacaggaacgtgattgagggacctaa 187
Query: 121 atttaccgagcactgcggattccaaggctcccagagttaactggcctgatct 172
|||||| ||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct: 186 atttactgagcactgcagattccaaggctcccagagttaaccggcccgatct 135
>gb|CW088299.1|CW088299 104_433_10948100_116_32576_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948100, DNA
sequence
Length = 599
Score = 254 bits (128), Expect = 9e-066
Identities = 161/172 (93%)
Strand = Plus / Minus
Query: 1 acaaagcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccc 60
|||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 568 acaaagcctgacgttgtgttagaccgaccgggtaaattctgtatacttacaggtcatccc 509
Query: 61 cacctctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaa 120
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 508 cacctctaatactcggtggtctttcatccttccatacaggaacgtgattgagggacctaa 449
Query: 121 atttaccgagcactgcggattccaaggctcccagagttaactggcctgatct 172
|||||| ||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct: 448 atttactgagcactgcagattccaaggctcccagagttaaccggcccgatct 397
Score = 87.7 bits (44), Expect = 1e-015
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 171 ctcatgtaaatgctctctgacttaaaccgccctctctctcggataaataagt 222
||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 52 ctcatataaatgctctctgacttaaaccgccctctttctcggataaataagt 1
>gb|CL187618.1|CL187618 104_403_10901012_116_32464_074 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901012, DNA
sequence
Length = 593
Score = 71.9 bits (36), Expect = 7e-011
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 8 ctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacctct 67
|||||| ||||||||||| |||||||||||| |||||| ||||||| | ||| || ||||
Sbjct: 310 ctgacgctgcgttagaccaactgggtaaattttgtatactttcaggccgtcctcaactct 251
Query: 68 aatgctcggtgg 79
||| ||||||||
Sbjct: 250 aatactcggtgg 239
Score = 44.1 bits (22), Expect = 0.016
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 100 gaacgtggttgagggacctaaatttaccgagcac 133
|||| |||||||||||| ||||||||||||||||
Sbjct: 234 gaacatggttgagggac-taaatttaccgagcac 202
>gb|CW476677.1|CW476677 fsbb001f233k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233k08, DNA
sequence
Length = 741
Score = 71.9 bits (36), Expect = 7e-011
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 8 ctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacctct 67
|||||| ||||||||||| |||||||||||| |||||| ||||||| | ||| || ||||
Sbjct: 342 ctgacgctgcgttagaccaactgggtaaattttgtatactttcaggccgtcctcaactct 283
Query: 68 aatgctcggtgg 79
||| ||||||||
Sbjct: 282 aatactcggtgg 271
Score = 44.1 bits (22), Expect = 0.016
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 100 gaacgtggttgagggacctaaatttaccgagcac 133
|||| |||||||||||| ||||||||||||||||
Sbjct: 266 gaacatggttgagggac-taaatttaccgagcac 234
>gb|CW476678.1|CW476678 fsbb001f233k08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233k08, DNA
sequence
Length = 664
Score = 71.9 bits (36), Expect = 7e-011
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 8 ctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacctct 67
|||||| ||||||||||| |||||||||||| |||||| ||||||| | ||| || ||||
Sbjct: 511 ctgacgctgcgttagaccaactgggtaaattttgtatactttcaggccgtcctcaactct 570
Query: 68 aatgctcggtgg 79
||| ||||||||
Sbjct: 571 aatactcggtgg 582
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,644
Number of Sequences: 832831
Number of extensions: 148644
Number of successful extensions: 39751
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39737
Number of HSP's gapped (non-prelim): 12
length of query: 637
length of database: 491,359,669
effective HSP length: 19
effective length of query: 618
effective length of database: 475,535,880
effective search space: 293881173840
effective search space used: 293881173840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)