BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH13e05.yg.2.1
(577 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW210433.1|CW210433 104_640_11189792_116_37000_018 Sorgh... 379 e-103
gb|BG463534.1|BG463534 EM1_49_F12.g1_A002 Embryo 1 (EM1) So... 379 e-103
gb|BE594757.1|BE594757 PI1_45_B05.g1_A002 Pathogen induced ... 323 1e-086
gb|CW210434.1|CW210434 104_640_11189792_148_36999_018 Sorgh... 141 8e-032
gb|BM327323.1|BM327323 PIC1_12_A11.g1_A002 Pathogen-infecte... 88 1e-015
gb|BZ339080.1|BZ339080 ic29f10.g1 WGS-SbicolorF (JM107 adap... 62 6e-008
gb|BI075686.1|BI075686 IP1_23_H07.g1_A002 Immature pannicle... 52 6e-005
gb|BZ347721.1|BZ347721 ho33f07.g2 WGS-SbicolorF (JM107 adap... 40 0.22
gb|CW160051.1|CW160051 104_566_11149680_116_36425_090 Sorgh... 40 0.22
gb|CW160052.1|CW160052 104_566_11149680_148_36426_090 Sorgh... 40 0.22
>gb|CW210433.1|CW210433 104_640_11189792_116_37000_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189792, DNA
sequence
Length = 644
Score = 379 bits (191), Expect = e-103
Identities = 212/219 (96%)
Strand = Plus / Minus
Query: 220 atttctgttattctttgcaacatgttcctcgttttgttttctgaaactgatcccagaggc 279
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 357 atttctgttattctttgcaacatgttcctcgttttgttttctgaaacttatcccagaggc 298
Query: 280 acatcatatcccttggttcttggtaatgagcaatcacatagccatcctcgcatccttcaa 339
||||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||
Sbjct: 297 acatcatatcccttggttcttggtagtgagcaaccacatacccatcctcgcacccttcaa 238
Query: 340 ccaaaatcctcccatcattctcatacttgacatccaagccatccttcttcatctcattga 399
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ccaagatcctcccatcattctcatacttgacatccaagccatccttcttcatctcattga 178
Query: 400 tccatattcccattgcgacatcctccagcttgaacatct 438
||||||||||||||||||||||||| |||||||||||||
Sbjct: 177 tccatattcccattgcgacatcctctagcttgaacatct 139
Score = 87.7 bits (44), Expect = 1e-015
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 21 tagtttgacttgaaactcttcaaactgcagacgaaacaaactt-gaagatatccaaaaaa 79
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 536 tagtttgacttgaaactcttcagactgcggacgaaacaaacttagaagatatccaaaact 477
Query: 80 ttgtttgc 87
||||||||
Sbjct: 476 ttgtttgc 469
Score = 75.8 bits (38), Expect = 4e-012
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 112 agaatcctcttaggcagggctgt--atacatcaagaacgttttagcgtgaaggtgtctat 169
|||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||| |
Sbjct: 454 agaatcctcttaggtagggctgtgtatatatcaagaacgttttagcgtgacggtgtctgt 395
Query: 170 tcaagcaac 178
|||| ||||
Sbjct: 394 tcaaccaac 386
>gb|BG463534.1|BG463534 EM1_49_F12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 616
Score = 379 bits (191), Expect = e-103
Identities = 212/219 (96%)
Strand = Plus / Minus
Query: 220 atttctgttattctttgcaacatgttcctcgttttgttttctgaaactgatcccagaggc 279
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 219 atttctgttattctttgcaacatgttcctcgttttgttttctgaaacttatcccagaggc 160
Query: 280 acatcatatcccttggttcttggtaatgagcaatcacatagccatcctcgcatccttcaa 339
||||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||
Sbjct: 159 acatcatatcccttggttcttggtagtgagcaaccacatacccatcctcgcacccttcaa 100
Query: 340 ccaaaatcctcccatcattctcatacttgacatccaagccatccttcttcatctcattga 399
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ccaagatcctcccatcattctcatacttgacatccaagccatccttcttcatctcattga 40
Query: 400 tccatattcccattgcgacatcctccagcttgaacatct 438
||||||||||||||||||||||||| |||||||||||||
Sbjct: 39 tccatattcccattgcgacatcctctagcttgaacatct 1
Score = 87.7 bits (44), Expect = 1e-015
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 21 tagtttgacttgaaactcttcaaactgcagacgaaacaaactt-gaagatatccaaaaaa 79
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 398 tagtttgacttgaaactcttcagactgcggacgaaacaaacttagaagatatccaaaact 339
Query: 80 ttgtttgc 87
||||||||
Sbjct: 338 ttgtttgc 331
Score = 75.8 bits (38), Expect = 4e-012
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 112 agaatcctcttaggcagggctgt--atacatcaagaacgttttagcgtgaaggtgtctat 169
|||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||| |
Sbjct: 316 agaatcctcttaggtagggctgtgtatatatcaagaacgttttagcgtgacggtgtctgt 257
Query: 170 tcaagcaac 178
|||| ||||
Sbjct: 256 tcaaccaac 248
>gb|BE594757.1|BE594757 PI1_45_B05.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 636
Score = 323 bits (163), Expect = 1e-086
Identities = 181/187 (96%)
Strand = Plus / Minus
Query: 220 atttctgttattctttgcaacatgttcctcgttttgttttctgaaactgatcccagaggc 279
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 187 atttctgttattctttgcaacatgttcctcgttttgttttctgaaacttatcccagaggc 128
Query: 280 acatcatatcccttggttcttggtaatgagcaatcacatagccatcctcgcatccttcaa 339
||||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||
Sbjct: 127 acatcatatcccttggttcttggtagtgagcaaccacatacccatcctcgcacccttcaa 68
Query: 340 ccaaaatcctcccatcattctcatacttgacatccaagccatccttcttcatctcattga 399
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ccaagatcctcccatcattctcatacttgacatccaagccatccttcttcatctcattga 8
Query: 400 tccatat 406
|||||||
Sbjct: 7 tccatat 1
Score = 87.7 bits (44), Expect = 1e-015
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 21 tagtttgacttgaaactcttcaaactgcagacgaaacaaactt-gaagatatccaaaaaa 79
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 366 tagtttgacttgaaactcttcagactgcggacgaaacaaacttagaagatatccaaaact 307
Query: 80 ttgtttgc 87
||||||||
Sbjct: 306 ttgtttgc 299
Score = 75.8 bits (38), Expect = 4e-012
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 112 agaatcctcttaggcagggctgt--atacatcaagaacgttttagcgtgaaggtgtctat 169
|||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||| |
Sbjct: 284 agaatcctcttaggtagggctgtgtatatatcaagaacgttttagcgtgacggtgtctgt 225
Query: 170 tcaagcaac 178
|||| ||||
Sbjct: 224 tcaaccaac 216
>gb|CW210434.1|CW210434 104_640_11189792_148_36999_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189792, DNA
sequence
Length = 659
Score = 141 bits (71), Expect = 8e-032
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 220 atttctgttattctttgcaacatgttcctcgttttgttttctgaaactgatcccagaggc 279
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 585 atttctgttattctttgcaacatgttcctcgttttgttttctgaaacttatcccagaggc 644
Query: 280 acatcatatcccttg 294
|||||||||||||||
Sbjct: 645 acatcatatcccttg 659
Score = 87.7 bits (44), Expect = 1e-015
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 21 tagtttgacttgaaactcttcaaactgcagacgaaacaaactt-gaagatatccaaaaaa 79
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 406 tagtttgacttgaaactcttcagactgcggacgaaacaaacttagaagatatccaaaact 465
Query: 80 ttgtttgc 87
||||||||
Sbjct: 466 ttgtttgc 473
Score = 75.8 bits (38), Expect = 4e-012
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 112 agaatcctcttaggcagggctgt--atacatcaagaacgttttagcgtgaaggtgtctat 169
|||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||| |
Sbjct: 488 agaatcctcttaggtagggctgtgtatatatcaagaacgttttagcgtgacggtgtctgt 547
Query: 170 tcaagcaac 178
|||| ||||
Sbjct: 548 tcaaccaac 556
>gb|BM327323.1|BM327323 PIC1_12_A11.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 473
Score = 87.7 bits (44), Expect = 1e-015
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 21 tagtttgacttgaaactcttcaaactgcagacgaaacaaactt-gaagatatccaaaaaa 79
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 227 tagtttgacttgaaactcttcagactgcggacgaaacaaacttagaagatatccaaaact 168
Query: 80 ttgtttgc 87
||||||||
Sbjct: 167 ttgtttgc 160
Score = 87.7 bits (44), Expect = 1e-015
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 220 atttctgttattctttgcaacatgttcctcgttttgttttctga 263
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 atttctgttattctttgcaacatgttcctcgttttgttttctga 5
Score = 75.8 bits (38), Expect = 4e-012
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 112 agaatcctcttaggcagggctgt--atacatcaagaacgttttagcgtgaaggtgtctat 169
|||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||| |
Sbjct: 145 agaatcctcttaggtagggctgtgtatatatcaagaacgttttagcgtgacggtgtctgt 86
Query: 170 tcaagcaac 178
|||| ||||
Sbjct: 85 tcaaccaac 77
>gb|BZ339080.1|BZ339080 ic29f10.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic29f10 5', DNA sequence
Length = 531
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/58 (89%), Gaps = 2/58 (3%)
Strand = Plus / Minus
Query: 112 agaatcctcttaggcagggctgt--atacatcaagaacgttttagcgtgaaggtgtct 167
|||||||| ||||| |||||||| ||| ||||||||||||||||||||| |||||||
Sbjct: 62 agaatcctgttaggtagggctgtgtatatatcaagaacgttttagcgtgacggtgtct 5
Score = 50.1 bits (25), Expect = 2e-004
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 21 tagtttgacttgaaactcttcaaactgcagacgaaacaaactt-gaagatatccaaa 76
||||||||||||||||| |||| |||| ||||| ||||| || |||||||||||||
Sbjct: 145 tagtttgacttgaaactgttcaggctgcggacgagacaaagttagaagatatccaaa 89
>gb|BI075686.1|BI075686 IP1_23_H07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor
cDNA, mRNA sequence
Length = 283
Score = 52.0 bits (26), Expect = 6e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 21 tagtttgacttgaaactcttcaaactgcagacga 54
|||||||||||||||||||||| ||||| |||||
Sbjct: 37 tagtttgacttgaaactcttcagactgcggacga 4
>gb|BZ347721.1|BZ347721 ho33f07.g2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho33f07 5', DNA sequence
Length = 682
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 288 tcccttggttcttggtaatg 307
||||||||||||||||||||
Sbjct: 517 tcccttggttcttggtaatg 498
>gb|CW160051.1|CW160051 104_566_11149680_116_36425_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149680, DNA
sequence
Length = 702
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 288 tcccttggttcttggtaatg 307
||||||||||||||||||||
Sbjct: 606 tcccttggttcttggtaatg 587
>gb|CW160052.1|CW160052 104_566_11149680_148_36426_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149680, DNA
sequence
Length = 714
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 288 tcccttggttcttggtaatg 307
||||||||||||||||||||
Sbjct: 436 tcccttggttcttggtaatg 455
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 157,911
Number of Sequences: 832831
Number of extensions: 157911
Number of successful extensions: 44216
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44184
Number of HSP's gapped (non-prelim): 21
length of query: 577
length of database: 491,359,669
effective HSP length: 19
effective length of query: 558
effective length of database: 475,535,880
effective search space: 265349021040
effective search space used: 265349021040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)