BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG11e12.yg.2.1
(636 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM322224.1|BM322224 PIC1_1_G09.b1_A002 Pathogen-infected... 40 0.24
gb|BM323359.1|BM323359 PIC1_18_D06.b1_A002 Pathogen-infecte... 40 0.24
gb|CD213528.1|CD213528 HS1_41_G11.g1_A012 Heat-shocked seed... 40 0.24
gb|CN140596.1|CN140596 OX1_45_A01.g1_A002 Oxidatively-stres... 40 0.24
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.24
>gb|BM322224.1|BM322224 PIC1_1_G09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 484 tgcttgctccagacataaac 465
>gb|BM323359.1|BM323359 PIC1_18_D06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 484 tgcttgctccagacataaac 465
>gb|CD213528.1|CD213528 HS1_41_G11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_41_G11_A012 5', mRNA sequence
Length = 791
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 597 tgcttgctccagacataaac 578
>gb|CN140596.1|CN140596 OX1_45_A01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_45_A01_A002 5', mRNA sequence
Length = 751
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 518 tgcttgctccagacataaac 499
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 616 agtacctgcccgggcggccg 635
||||||||||||||||||||
Sbjct: 191 agtacctgcccgggcggccg 210
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 183,006
Number of Sequences: 832831
Number of extensions: 183006
Number of successful extensions: 50644
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50638
Number of HSP's gapped (non-prelim): 6
length of query: 636
length of database: 491,359,669
effective HSP length: 19
effective length of query: 617
effective length of database: 475,535,880
effective search space: 293405637960
effective search space used: 293405637960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)