BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF2e06.yg.2.1
(319 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW564970.1|AW564970 LG1_313_E03.b1_A002 Light Grown 1 (L... 365 2e-099
gb|BG103344.1|BG103344 RHIZ2_19_A09.b1_A003 Rhizome2 (RHIZ2... 365 2e-099
gb|BI098424.1|BI098424 IP1_32_B12.b1_A002 Immature pannicle... 365 2e-099
gb|BI211958.1|BI211958 IP1_62_F03.b1_A002 Immature pannicle... 365 2e-099
gb|CD204891.1|CD204891 HS1_10_D12.g1_A012 Heat-shocked seed... 365 2e-099
gb|CD424306.1|CD424306 SA1_4_C04.g1_A002 Salicylic acid-tre... 365 2e-099
gb|CF759066.1|CF759066 DSAF1_40_E12.b1_A011 Drought-stresse... 365 2e-099
gb|CN136226.1|CN136226 OX1_41_C08.g1_A002 Oxidatively-stres... 365 2e-099
gb|BF704783.1|BF704783 FM1_51_E02.b1_A003 Floral-Induced Me... 355 2e-096
gb|BE367584.1|BE367584 PI1_9_H03.b1_A002 Pathogen induced 1... 353 6e-096
gb|BI141186.1|BI141186 IP1_44_C06.b1_A002 Immature pannicle... 349 1e-094
gb|BI141194.1|BI141194 IP1_44_D05.b1_A002 Immature pannicle... 349 1e-094
gb|AW287056.2|AW287056 LG1_264_H12.b1_A002 Light Grown 1 (L... 331 2e-089
gb|BF657152.1|BF657152 OV2_21_D06.b1_A002 Ovary 2 (OV2) Sor... 329 9e-089
gb|BG355607.2|BG355607 EM1_19_H10.b1_A002 Embryo 1 (EM1) So... 329 9e-089
gb|BI141038.1|BI141038 IP1_42_D04.b1_A002 Immature pannicle... 272 2e-071
gb|BI140030.1|BI140030 IP1_49_A09.b1_A002 Immature pannicle... 268 3e-070
gb|BG104040.1|BG104040 RHIZ2_39_G09.b1_A003 Rhizome2 (RHIZ2... 264 4e-069
gb|BG158875.1|BG158875 RHIZ2_43_F09.b1_A003 Rhizome2 (RHIZ2... 262 2e-068
gb|BI140412.1|BI140412 IP1_49_A09.b2_A002 Immature pannicle... 258 3e-067
gb|AW564963.1|AW564963 LG1_313_F10.b1_A002 Light Grown 1 (L... 234 4e-060
gb|BG050808.1|BG050808 FM1_70_H09.b1_A003 Floral-Induced Me... 234 4e-060
gb|BI141187.1|BI141187 IP1_44_C07.b1_A002 Immature pannicle... 224 4e-057
gb|CN129510.1|CN129510 RHOH1_35_G06.g1_A002 Acid- and alkal... 208 2e-052
gb|BI246111.1|BI246111 IP1_67_A03.b1_A002 Immature pannicle... 184 3e-045
gb|BG050739.1|BG050739 FM1_69_H10.b1_A003 Floral-Induced Me... 149 2e-034
gb|BG240311.1|BG240311 OV1_20_E02.b1_A002 Ovary 1 (OV1) Sor... 96 2e-018
gb|BM326009.1|BM326009 PIC1_64_F03.b1_A002 Pathogen-infecte... 96 2e-018
gb|AW286624.1|AW286624 LG1_335_C02.g1_A002 Light Grown 1 (L... 74 8e-012
gb|AW285924.2|AW285924 LG1_255_A04.b1_A002 Light Grown 1 (L... 74 8e-012
gb|AW285980.2|AW285980 LG1_255_G03.b1_A002 Light Grown 1 (L... 74 8e-012
gb|AW672029.1|AW672029 LG1_354_A10.b1_A002 Light Grown 1 (L... 74 8e-012
gb|BG947245.1|BG947245 IP1_3_C05.b1_A002 Immature pannicle ... 74 8e-012
gb|BG947298.1|BG947298 IP1_3_H02.b1_A002 Immature pannicle ... 74 8e-012
gb|BG947830.1|BG947830 IP1_5_F12.b1_A002 Immature pannicle ... 74 8e-012
gb|BG948773.1|BG948773 LG1_266_A06.b1_A002 Light Grown 1 (L... 74 8e-012
gb|BI098352.1|BI098352 IP1_31_C12.b1_A002 Immature pannicle... 74 8e-012
gb|CB927371.1|CB927371 ABA1_25_H03.g1_A012 Abscisic acid-tr... 74 8e-012
gb|CD205163.1|CD205163 HS1_12_B07.g1_A012 Heat-shocked seed... 74 8e-012
gb|CX607088.1|CX607088 ANR1_6_D07.g1_A002 Anaerobic roots S... 74 8e-012
gb|CD227452.1|CD227452 CCC1_51_B07.g1_A007 Callus culture/c... 68 5e-010
gb|BE356586.1|BE356586 DG1_126_B05.b1_A002 Dark Grown 1 (DG... 56 2e-006
gb|BF421027.1|BF421027 FM1_5_D01.b1_A003 Floral-Induced Mer... 40 0.12
gb|BF421358.1|BF421358 FM1_7_F08.b1_A003 Floral-Induced Mer... 40 0.12
gb|BF422192.1|BF422192 FM1_12_H12.b1_A003 Floral-Induced Me... 40 0.12
gb|BF481351.1|BF481351 FM1_18_A03.b1_A003 Floral-Induced Me... 40 0.12
gb|BF586492.1|BF586492 FM1_28_H06.b1_A003 Floral-Induced Me... 40 0.12
gb|BF586686.1|BF586686 FM1_30_E10.b1_A003 Floral-Induced Me... 40 0.12
gb|BF587401.1|BF587401 FM1_36_A01.b1_A003 Floral-Induced Me... 40 0.12
gb|BF656129.1|BF656129 FM1_43_D07.b1_A003 Floral-Induced Me... 40 0.12
gb|BG487744.1|BG487744 FM1_73_G03.b1_A003 Floral-Induced Me... 40 0.12
gb|BI075343.1|BI075343 IP1_19_D05.b1_A002 Immature pannicle... 40 0.12
gb|BI098928.1|BI098928 IP1_35_A12.b1_A002 Immature pannicle... 40 0.12
gb|BI140037.1|BI140037 IP1_49_B09.b1_A002 Immature pannicle... 40 0.12
>gb|AW564970.1|AW564970 LG1_313_E03.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 623
Score = 365 bits (184), Expect = 2e-099
Identities = 266/299 (88%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 123 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 182
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 183 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 242
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 243 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 302
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 303 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 362
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 363 gccttggagaaaaccaaataccccaactcggacatatacttggacaaatttgacagcca 421
>gb|BG103344.1|BG103344 RHIZ2_19_A09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 556
Score = 365 bits (184), Expect = 2e-099
Identities = 266/299 (88%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 232 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 291
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 292 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 351
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 352 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 411
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 412 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 471
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 472 gccttggagaaaaccaaataccccaactcggacatatacttggacaaatttgacagcca 530
>gb|BI098424.1|BI098424 IP1_32_B12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 660
Score = 365 bits (184), Expect = 2e-099
Identities = 266/299 (88%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 287 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 346
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 347 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 406
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 407 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 466
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 467 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 526
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 527 gccttggagaaaaccaaataccccaactcggacatatacttggacaaatttgacagcca 585
>gb|BI211958.1|BI211958 IP1_62_F03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 649
Score = 365 bits (184), Expect = 2e-099
Identities = 266/299 (88%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 146 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 205
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 206 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 265
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 266 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 325
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 326 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 385
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 386 gccttggagaaaaccaaataccccaactcggacatatacttggacaaatttgacagcca 444
>gb|CD204891.1|CD204891 HS1_10_D12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_10_D12_A012 5', mRNA sequence
Length = 728
Score = 365 bits (184), Expect = 2e-099
Identities = 266/299 (88%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 225 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 284
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 285 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 344
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 345 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 404
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 405 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 464
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 465 gccttggagaaaaccaaataccccaactcggacatatacttggacaaatttgacagcca 523
>gb|CD424306.1|CD424306 SA1_4_C04.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_4_C04_A002 5', mRNA sequence
Length = 645
Score = 365 bits (184), Expect = 2e-099
Identities = 266/299 (88%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 281 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 340
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 341 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 400
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 401 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 460
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 461 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 520
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 521 gccttggagaaaaccaaataccccaactcggacatatacttggacaaatttgacagcca 579
>gb|CF759066.1|CF759066 DSAF1_40_E12.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_40_E12_A011 5', mRNA sequence
Length = 539
Score = 365 bits (184), Expect = 2e-099
Identities = 266/299 (88%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 36 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 95
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 96 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 155
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 156 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 215
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 216 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 275
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 276 gccttggagaaaaccaaataccccaactcggacatatacttggacaaatttgacagcca 334
>gb|CN136226.1|CN136226 OX1_41_C08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_C08_A002 5', mRNA sequence
Length = 870
Score = 365 bits (184), Expect = 2e-099
Identities = 266/299 (88%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 499 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 558
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 559 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 618
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 619 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 678
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 679 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 738
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 739 gccttggagaaaaccaaataccccaactcggacatatacttggacaaatttgacagcca 797
>gb|BF704783.1|BF704783 FM1_51_E02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 393
Score = 355 bits (179), Expect = 2e-096
Identities = 243/269 (90%)
Strand = Plus / Plus
Query: 49 ttcagaaatgagaatggcatcctccgcnannngatctctcnnnttgatnnntggccatac 108
||||||||||||||||| || |||||| | |||||||| ||||| |||||||||
Sbjct: 26 ttcagaaatgagaatggtattctccgcaagtggatctctcgttttgatgtctggccatac 85
Query: 109 ctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcnggccaagcct 168
|||||||||||||||||||||||| ||| |||||||| |||||||| ||||||||||
Sbjct: 86 ctggagacatacactgaggatgttgccagtgaaataatgttagaaatgcaggccaagcct 145
Query: 169 gaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcacaag 228
||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 146 gaccttatcgttggcaactacagtgatggcaacctagtcgccactctgctcgcacacaag 205
Query: 229 ttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcg 288
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 206 ttgggagttactcagtgtaccattgcccatgccttggagaaaaccaaataccccaactcg 265
Query: 289 gacatatacttggacaaattcgacagcca 317
|||||||||||||||||||| ||||||||
Sbjct: 266 gacatatacttggacaaatttgacagcca 294
>gb|BE367584.1|BE367584 PI1_9_H03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 524
Score = 353 bits (178), Expect = 6e-096
Identities = 257/289 (88%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 230 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 289
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 290 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 349
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 350 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 409
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 410 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 469
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaat 307
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gccttggagaaaaccaaataccccaactcggacatatacttggacaaat 518
>gb|BI141186.1|BI141186 IP1_44_C06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 635
Score = 349 bits (176), Expect = 1e-094
Identities = 265/299 (88%), Gaps = 1/299 (0%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 270 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 329
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 330 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 389
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 390 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 449
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 450 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 509
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 510 gccttggag-aaaccaaataccccaactcggacatatacttggacaaatttgacagcca 567
>gb|BI141194.1|BI141194 IP1_44_D05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 639
Score = 349 bits (176), Expect = 1e-094
Identities = 264/299 (88%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 270 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 329
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 330 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 389
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 390 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 449
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||| ||||||| || |||
Sbjct: 450 aacctagtcgccactctgctcgcacacaagttgggagttactcagagtaccattgcccat 509
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 510 gccttggagaaaaccagataccccaactcggacatatacttggacaaatttgacagcca 568
>gb|AW287056.2|AW287056 LG1_264_H12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 331 bits (167), Expect = 2e-089
Identities = 217/237 (91%)
Strand = Plus / Plus
Query: 81 gatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccannna 140
|||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct: 10 gatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagtga 69
Query: 141 aataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaa 200
||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 70 aataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggcaa 129
Query: 201 cctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgc 260
||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||||
Sbjct: 130 cctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccatgc 189
Query: 261 cttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 190 cttggagaaaaccaaataccccaactcggacatatacttggacaaatttgacagcca 246
>gb|BF657152.1|BF657152 OV2_21_D06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 482
Score = 329 bits (166), Expect = 9e-089
Identities = 204/218 (93%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| |
Sbjct: 14 tggccatacctggagacatacactgaggatgttgccagtgaaataatgttagaaatgcag 73
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 74 gccaagcctgaccttatcgttggcaactacagtgatggcaacctagtcgccactctgctc 133
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct: 134 gcacacaagttgggagttactcagtgtaccattgcccatgccttggagaaaaccaaatac 193
Query: 280 cccaactcggacatatacttggacaaattcgacagcca 317
||||||||||||||||||||||||||||| ||||||||
Sbjct: 194 cccaactcggacatatacttggacaaatttgacagcca 231
>gb|BG355607.2|BG355607 EM1_19_H10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 571
Score = 329 bits (166), Expect = 9e-089
Identities = 204/218 (93%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| |
Sbjct: 23 tggccatacctggagacatacactgaggatgttgccagtgaaataatgttagaaatgcag 82
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 83 gccaagcctgaccttatcgttggcaactacagtgatggcaacctagtcgccactctgctc 142
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct: 143 gcacacaagttgggagttactcagtgtaccattgcccatgccttggagaaaaccaaatac 202
Query: 280 cccaactcggacatatacttggacaaattcgacagcca 317
||||||||||||||||||||||||||||| ||||||||
Sbjct: 203 cccaactcggacatatacttggacaaatttgacagcca 240
>gb|BI141038.1|BI141038 IP1_42_D04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 517
Score = 272 bits (137), Expect = 2e-071
Identities = 216/248 (87%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 270 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 329
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 330 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 389
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 390 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 449
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 450 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 509
Query: 259 gccttgga 266
||||||||
Sbjct: 510 gccttgga 517
>gb|BI140030.1|BI140030 IP1_49_A09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 529
Score = 268 bits (135), Expect = 3e-070
Identities = 214/246 (86%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 284 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 343
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 344 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 403
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 404 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 463
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 464 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 523
Query: 259 gccttg 264
||||||
Sbjct: 524 gccttg 529
>gb|BG104040.1|BG104040 RHIZ2_39_G09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 562
Score = 264 bits (133), Expect = 4e-069
Identities = 212/244 (86%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 319 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 378
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 379 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 438
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 439 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 498
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 499 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 558
Query: 259 gcct 262
||||
Sbjct: 559 gcct 562
>gb|BG158875.1|BG158875 RHIZ2_43_F09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 474
Score = 262 bits (132), Expect = 2e-068
Identities = 211/243 (86%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 232 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 291
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 292 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 351
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 352 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 411
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 412 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccat 471
Query: 259 gcc 261
|||
Sbjct: 472 gcc 474
>gb|BI140412.1|BI140412 IP1_49_A09.b2_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 520
Score = 258 bits (130), Expect = 3e-067
Identities = 203/233 (87%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 284 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 343
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 344 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 403
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 404 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 463
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccat 251
||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 464 aacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccat 516
>gb|AW564963.1|AW564963 LG1_313_F10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 633
Score = 234 bits (118), Expect = 4e-060
Identities = 193/224 (86%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 410 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 469
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| |||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 470 tggatctctcgttntgatgtctggccatacctggagacatacactgaggatgttgccagt 529
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 530 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 589
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactca 242
||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 590 aacctagtcgccactctgctcgcacacaagttgggagttactca 633
>gb|BG050808.1|BG050808 FM1_70_H09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 428
Score = 234 bits (118), Expect = 4e-060
Identities = 188/217 (86%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 212 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 271
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 272 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 331
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 332 gaaataatgttagaaatgcaggccaagcctgaccttatcgttggcaactacagtgatggc 391
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggag 235
||||||||||||||||||||||| |||||||||||||
Sbjct: 392 aacctagtcgccactctgctcgcacacaagttgggag 428
>gb|BI141187.1|BI141187 IP1_44_C07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 484
Score = 224 bits (113), Expect = 4e-057
Identities = 185/215 (86%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 270 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 329
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 330 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 389
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||
Sbjct: 390 gaaataatgttagaaatgcangccaagcctgaccttatcgttggcaactacagtgatggc 449
Query: 199 aacctagtcgccactctgctcgcgcacaagttggg 233
||||||||||||||||||||||| |||||||||||
Sbjct: 450 aacctagtcgccactctgctcgcacacaagttggg 484
>gb|CN129510.1|CN129510 RHOH1_35_G06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_35_G06_A002 5', mRNA sequence
Length = 814
Score = 208 bits (105), Expect = 2e-052
Identities = 120/125 (96%)
Strand = Plus / Plus
Query: 193 gatggcaacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatc 252
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 2 gatggcaacctagtcgccactctgctcgcacacaagttgggagttactcagtgtaccatt 61
Query: 253 gctcatgccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgac 312
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 62 gcccatgccttggagaaaaccaaataccccaactcggacatatacttggacaaatttgac 121
Query: 313 agcca 317
|||||
Sbjct: 122 agcca 126
>gb|BI246111.1|BI246111 IP1_67_A03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 448
Score = 184 bits (93), Expect = 3e-045
Identities = 108/113 (95%)
Strand = Plus / Plus
Query: 205 gtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttg 264
||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 9 gtcgccactctgctcgcacacaagttgggagttactcagtgtaccattgcccatgccttg 68
Query: 265 gagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 69 gagaaaaccaaataccccaactcggacatatacttggacaaatttgacagcca 121
>gb|BG050739.1|BG050739 FM1_69_H10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 190
Score = 149 bits (75), Expect = 2e-034
Identities = 154/186 (82%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| | |||| |||||| ||||| || |||||| |
Sbjct: 5 actgagcacactgacattattcgtattgcattcaaaaatgacaatgggattctccgcaag 64
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 65 tggatctctcgttttgatgtctggccatacctggagacatacactgaggatgttgccagt 124
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||||||| |||||||| |||||||||||||||| || ||||||||||||| ||||||
Sbjct: 125 gaaataatgttagaaatgcaggccaagcctgaccttgtcgttggcaactacagtgatggc 184
Query: 199 aaccta 204
||||||
Sbjct: 185 aaccta 190
>gb|BG240311.1|BG240311 OV1_20_E02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 450
Score = 95.6 bits (48), Expect = 2e-018
Identities = 83/99 (83%)
Strand = Plus / Plus
Query: 49 ttcagaaatgagaatggcatcctccgcnannngatctctcnnnttgatnnntggccatac 108
||||||||||||||||| || |||||| | |||||||| ||||| |||||||||
Sbjct: 349 ttcagaaatgagaatggtattctccgcaagtggatctctcgttttgatgtctggccatac 408
Query: 109 ctggagacatacactgaggatgtttccannnaaataatg 147
|||||||||||||||||||||||| ||| ||||||||
Sbjct: 409 ctggagacatacactgaggatgttgccagtgaaataatg 447
>gb|BM326009.1|BM326009 PIC1_64_F03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 337
Score = 95.6 bits (48), Expect = 2e-018
Identities = 92/111 (82%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| ||||| || ||||||||||||||||| || |||||| |
Sbjct: 227 actgagcacactgacattattcgtattccattcagaaatgagaatggtattctccgcaag 286
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggat 129
|||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 287 tggatctctcgttttgatgtctggccatacctggagacatacactgaggat 337
>gb|AW286624.1|AW286624 LG1_335_C02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 557
Score = 73.8 bits (37), Expect = 8e-012
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 159 ggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | ||||
Sbjct: 214 ggccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgct 273
Query: 219 cgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaata 278
|||||||||| |||| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct: 274 cgcgcacaagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagta 333
Query: 279 ccccaactc 287
||| |||||
Sbjct: 334 ccctaactc 342
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 155 tggccttacctggagacttacactgatgatgt 186
>gb|AW285924.2|AW285924 LG1_255_A04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 489
Score = 73.8 bits (37), Expect = 8e-012
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 159 ggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | ||||
Sbjct: 154 ggccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgct 213
Query: 219 cgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaata 278
|||||||||| |||| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct: 214 cgcgcacaagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagta 273
Query: 279 ccccaactc 287
||| |||||
Sbjct: 274 ccctaactc 282
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 95 tggccttacctggagacttacactgatgatgt 126
>gb|AW285980.2|AW285980 LG1_255_G03.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 490
Score = 73.8 bits (37), Expect = 8e-012
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 159 ggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | ||||
Sbjct: 154 ggccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgct 213
Query: 219 cgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaata 278
|||||||||| |||| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct: 214 cgcgcacaagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagta 273
Query: 279 ccccaactc 287
||| |||||
Sbjct: 274 ccctaactc 282
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 95 tggccttacctggagacttacactgatgatgt 126
>gb|AW672029.1|AW672029 LG1_354_A10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 502
Score = 73.8 bits (37), Expect = 8e-012
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 159 ggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | ||||
Sbjct: 367 ggccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgct 426
Query: 219 cgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaata 278
|||||||||| |||| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct: 427 cgcgcacaagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagta 486
Query: 279 ccccaactc 287
||| |||||
Sbjct: 487 ccctaactc 495
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 308 tggccttacctggagacttacactgatgatgt 339
>gb|BG947245.1|BG947245 IP1_3_C05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 73.8 bits (37), Expect = 8e-012
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 159 ggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | ||||
Sbjct: 17 ggccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgct 76
Query: 219 cgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaata 278
|||||||||| |||| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct: 77 cgcgcacaagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagta 136
Query: 279 ccccaactc 287
||| |||||
Sbjct: 137 ccctaactc 145
>gb|BG947298.1|BG947298 IP1_3_H02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 500
Score = 73.8 bits (37), Expect = 8e-012
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 159 ggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | ||||
Sbjct: 364 ggccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgct 423
Query: 219 cgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaata 278
|||||||||| |||| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct: 424 cgcgcacaagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagta 483
Query: 279 ccccaactc 287
||| |||||
Sbjct: 484 ccctaactc 492
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 305 tggccttacctggagacttacactgatgatgt 336
>gb|BG947830.1|BG947830 IP1_5_F12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 571
Score = 73.8 bits (37), Expect = 8e-012
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 159 ggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | ||||
Sbjct: 247 ggccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgct 306
Query: 219 cgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaata 278
|||||||||| |||| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct: 307 cgcgcacaagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagta 366
Query: 279 ccccaactc 287
||| |||||
Sbjct: 367 ccctaactc 375
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 188 tggccttacctggagacttacactgatgatgt 219
>gb|BG948773.1|BG948773 LG1_266_A06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 447
Score = 73.8 bits (37), Expect = 8e-012
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 159 ggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | ||||
Sbjct: 139 ggccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgct 198
Query: 219 cgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaata 278
|||||||||| |||| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct: 199 cgcgcacaagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagta 258
Query: 279 ccccaactc 287
||| |||||
Sbjct: 259 ccctaactc 267
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 80 tggccttacctggagacttacactgatgatgt 111
>gb|BI098352.1|BI098352 IP1_31_C12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 512
Score = 73.8 bits (37), Expect = 8e-012
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 159 ggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | ||||
Sbjct: 44 ggccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgct 103
Query: 219 cgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaata 278
|||||||||| |||| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct: 104 cgcgcacaagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagta 163
Query: 279 ccccaactc 287
||| |||||
Sbjct: 164 ccctaactc 172
>gb|CB927371.1|CB927371 ABA1_25_H03.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_25_H03_A012 5', mRNA sequence
Length = 511
Score = 73.8 bits (37), Expect = 8e-012
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 159 ggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | ||||
Sbjct: 260 ggccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgct 319
Query: 219 cgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaata 278
|||||||||| |||| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct: 320 cgcgcacaagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagta 379
Query: 279 ccccaactc 287
||| |||||
Sbjct: 380 ccctaactc 388
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 201 tggccttacctggagacttacactgatgatgt 232
>gb|CD205163.1|CD205163 HS1_12_B07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_12_B07_A012 5', mRNA sequence
Length = 668
Score = 73.8 bits (37), Expect = 8e-012
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 159 ggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | ||||
Sbjct: 265 ggccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgct 324
Query: 219 cgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaata 278
|||||||||| |||| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct: 325 cgcgcacaagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagta 384
Query: 279 ccccaactc 287
||| |||||
Sbjct: 385 ccctaactc 393
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 206 tggccttacctggagacttacactgatgatgt 237
>gb|CX607088.1|CX607088 ANR1_6_D07.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_D07_A002 5', mRNA sequence
Length = 841
Score = 73.8 bits (37), Expect = 8e-012
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 159 ggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | ||||
Sbjct: 37 ggccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgct 96
Query: 219 cgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaata 278
|||||||||| |||| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct: 97 cgcgcacaagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagta 156
Query: 279 ccccaactc 287
||| |||||
Sbjct: 157 ccctaactc 165
>gb|CD227452.1|CD227452 CCC1_51_B07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_51_B07_A007 5', mRNA sequence
Length = 660
Score = 67.9 bits (34), Expect = 5e-010
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 166 cctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcac 225
|||||||| ||||| || |||||||| ||||| ||||| ||||| | |||||||||||
Sbjct: 380 cctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgctcgcgcac 439
Query: 226 aagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccccaac 285
||| |||| || ||||| |||||||| || || ||| | |||||||| || ||||| |||
Sbjct: 440 aagatgggtgttactcactgtaccattgcccacgcccttgagaaaactaagtaccctaac 499
Query: 286 tc 287
||
Sbjct: 500 tc 501
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 314 tggccttacctggagacttacactgatgatgt 345
>gb|BE356586.1|BE356586 DG1_126_B05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 294
Score = 56.0 bits (28), Expect = 2e-006
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| | |||||
Sbjct: 127 gccaatcctgacctgatcatcggaaactacagtgatggaaaccttgtcgcatgtttgctc 186
Query: 220 gcgcacaagttgggagtcactcagtgtaccat 251
|||||||| |||| || ||||| ||||||||
Sbjct: 187 gcgcacaacatgggtgttactcactgtaccat 218
>gb|BF421027.1|BF421027 FM1_5_D01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 521
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 360 tggccttacctggagacttacactgatgatgt 391
>gb|BF421358.1|BF421358 FM1_7_F08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 302 tggccttacctggagacttacactgatgatgt 333
>gb|BF422192.1|BF422192 FM1_12_H12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 261 tggccttacctggagacttacactgatgatgt 292
>gb|BF481351.1|BF481351 FM1_18_A03.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 380
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 255 tggccttacctggagacttacactgatgatgt 286
>gb|BF586492.1|BF586492 FM1_28_H06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 378 tggccttacctggagacttacactgatgatgt 409
>gb|BF586686.1|BF586686 FM1_30_E10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 196 tggccttacctggagacttacactgatgatgt 227
>gb|BF587401.1|BF587401 FM1_36_A01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 376
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 148 tggccttacctggagacttacactgatgatgt 179
>gb|BF656129.1|BF656129 FM1_43_D07.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 452
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgt 131
||||| ||||||||||| |||||||| |||||
Sbjct: 413 tggccttacctggagacttacactgatgatgt 444
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,510
Number of Sequences: 832831
Number of extensions: 47510
Number of successful extensions: 12455
Number of sequences better than 0.5: 54
Number of HSP's better than 0.5 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12389
Number of HSP's gapped (non-prelim): 64
length of query: 319
length of database: 491,359,669
effective HSP length: 19
effective length of query: 300
effective length of database: 475,535,880
effective search space: 142660764000
effective search space used: 142660764000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)