BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA13d08.yg.2.1
(511 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF487779.1|CF487779 POL1_45_H03.g1_A002 Pollen Sorghum b... 769 0.0
gb|CD203874.1|CD203874 HS1_2_E09.g1_A012 Heat-shocked seedl... 765 0.0
gb|CD206843.1|CD206843 HS1_25_F10.g1_A012 Heat-shocked seed... 172 2e-041
gb|CW228702.1|CW228702 104_668_11206524_148_37249_036 Sorgh... 70 2e-010
gb|CW255261.1|CW255261 104_719_11226138_148_35129_067 Sorgh... 70 2e-010
gb|CW411678.1|CW411678 fsbb001f106p10f0 Sorghum methylation... 70 2e-010
gb|AW286162.1|AW286162 LG1_328_C01.g1_A002 Light Grown 1 (L... 70 2e-010
gb|AW565193.1|AW565193 LG1_328_C01.b1_A002 Light Grown 1 (L... 70 2e-010
gb|AW745461.1|AW745461 WS1_35_H07.b1_A002 Water-stressed 1 ... 70 2e-010
gb|BG053950.1|BG053950 OV2_2_B10.g1_A002 Ovary 2 (OV2) Sorg... 70 2e-010
gb|BG054173.1|BG054173 OV2_2_B10.b1_A002 Ovary 2 (OV2) Sorg... 70 2e-010
gb|BG933263.1|BG933263 WS1_92_C06.g1_A002 Water-stressed 1 ... 70 2e-010
gb|CN135698.1|CN135698 OX1_38_A10.g1_A002 Oxidatively-stres... 70 2e-010
gb|CX617447.1|CX617447 GABR1_33_G02.g1_A002 GA- or brassino... 70 2e-010
gb|CD228912.1|CD228912 CCC1_10_B02.g1_A007 Callus culture/c... 48 8e-004
gb|CW476863.1|CW476863 fsbb001f233o16k0 Sorghum methylation... 44 0.012
gb|CW476862.1|CW476862 fsbb001f233o16f0 Sorghum methylation... 42 0.049
>gb|CF487779.1|CF487779 POL1_45_H03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_45_H03_A002 5', mRNA sequence
Length = 827
Score = 769 bits (388), Expect = 0.0
Identities = 455/476 (95%), Gaps = 1/476 (0%)
Strand = Plus / Plus
Query: 37 gtactcacactagtttaccagccttttgcctttggaataaccctcatcatgacatattat 96
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 341 gtactcacgctatcttaccagccttttgcctttggaataaccctcatcttgacattctat 400
Query: 97 gaagcaaagatgaacacaagattgagaaatcttgcaggattttcccttttcttcctcggt 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaagcaaagatgaacacaagattgagaaatcttgcaggattttcccttttcttcctcggt 460
Query: 157 tcttttgcattgataattctggatgttgcaactaaaggacatggtgggcttggtgttttc 216
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 461 tcctttgcattgataattctggatgttgcaactaaaggacatggtgggcttggagttttc 520
Query: 217 gttggtgtatgcataattagcgccatatttgggacagctgatgctaattgtcaaggcgca 276
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 521 attggtgtatgcataattagtgccatatttgggacagctgatgctaattgtcaaggcgca 580
Query: 277 ctggttggcgacctttctttaatgtgcccagagttcattcagtccttcatggcgggacta 336
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 581 ttggttggcgacctttctttgatgtgcccagagttcattcagtccttcatggcgggctta 640
Query: 337 gctgcatcaggggtcctaacatcagctttgagattagttaccaaggcagcttttgagagc 396
|||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 641 gctgcatcaggggttctcacatcagctttgagattaattaccaaggcagcttttgagagc 700
Query: 397 tcaaaagatggtcttcgcattggagctatactgttcttttcaatcacatgcct-gttcga 455
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 701 tcaaaagatggtcttcgcattggagctatactgttcttttcaatcacatgcctggttcga 760
Query: 456 gctggtgtgcctcctgctatacacattcgtcttcggcaaactacccatcgtgaagt 511
|||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct: 761 gctggtgtgcctcctgctatacacgttcgtcttcgccaaactacccatcgtaaagt 816
>gb|CD203874.1|CD203874 HS1_2_E09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_2_E09_A012 5', mRNA sequence
Length = 694
Score = 765 bits (386), Expect = 0.0
Identities = 443/462 (95%)
Strand = Plus / Plus
Query: 37 gtactcacactagtttaccagccttttgcctttggaataaccctcatcatgacatattat 96
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 233 gtactcacgctatcttaccagccttttgcctttggaataaccctcatcttgacattctat 292
Query: 97 gaagcaaagatgaacacaagattgagaaatcttgcaggattttcccttttcttcctcggt 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gaagcaaagatgaacacaagattgagaaatcttgcaggattttcccttttcttcctcggt 352
Query: 157 tcttttgcattgataattctggatgttgcaactaaaggacatggtgggcttggtgttttc 216
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 353 tcctttgcattgataattctggatgttgcaactaaaggacatggtgggcttggagttttc 412
Query: 217 gttggtgtatgcataattagcgccatatttgggacagctgatgctaattgtcaaggcgca 276
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 413 attggtgtatgcataattagtgccatatttgggacagctgatgctaattgtcaaggcgca 472
Query: 277 ctggttggcgacctttctttaatgtgcccagagttcattcagtccttcatggcgggacta 336
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 473 ttggttggcgacctttcttttatgtgcccagagttcattcagtccttcatggcgggctta 532
Query: 337 gctgcatcaggggtcctaacatcagctttgagattagttaccaaggcagcttttgagagc 396
|||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 533 gctgcatcaggggttctcacatcagctttgagattaattaccaaggcagcttttgagagc 592
Query: 397 tcaaaagatggtcttcgcattggagctatactgttcttttcaatcacatgcctgttcgag 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tcaaaagatggtcttcgcattggagctatactgttcttttcaatcacatgcctgttcgag 652
Query: 457 ctggtgtgcctcctgctatacacattcgtcttcggcaaacta 498
||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 653 ctggtgtgcctcctgctatacacgttcgtcttcgccaaacta 694
>gb|CD206843.1|CD206843 HS1_25_F10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_25_F10_A012 5', mRNA sequence
Length = 606
Score = 172 bits (87), Expect = 2e-041
Identities = 105/111 (94%)
Strand = Plus / Plus
Query: 281 ttggcgacctttctttaatgtgcccagagttcattcagtccttcatggcgggactagctg 340
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 496 ttggcgacctttcttttatgtgcccagagttcattcagtccttcatggcgggcttagctg 555
Query: 341 catcaggggtcctaacatcagctttgagattagttaccaaggcagcttttg 391
|||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct: 556 catcaggggttctcacatcagctttgagattaattaccaaggcagcttttg 606
>gb|CW228702.1|CW228702 104_668_11206524_148_37249_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206524, DNA
sequence
Length = 229
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| |||||||||||||||
Sbjct: 96 cccgccgtgccggagctgatggcgctctcggccacgtac 134
>gb|CW255261.1|CW255261 104_719_11226138_148_35129_067 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11226138, DNA sequence
Length = 663
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| |||||||||||||||
Sbjct: 57 cccgccgtgccggagctgatggcgctctcggccacgtac 95
>gb|CW411678.1|CW411678 fsbb001f106p10f0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f106p10, DNA
sequence
Length = 688
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| |||||||||||||||
Sbjct: 59 cccgccgtgccggagctgatggcgctctcggccacgtac 97
>gb|AW286162.1|AW286162 LG1_328_C01.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA,
mRNA sequence
Length = 506
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| |||||||||||||||
Sbjct: 62 cccgccgtgccggagctgatggcgctctcggccacgtac 24
>gb|AW565193.1|AW565193 LG1_328_C01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 614
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| |||||||||||||||
Sbjct: 495 cccgccgtgccggagctgatggcgctctcggccacgtac 457
>gb|AW745461.1|AW745461 WS1_35_H07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 532
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| |||||||||||||||
Sbjct: 522 cccgccgtgccggagctgatggcgctctcggccacgtac 484
>gb|BG053950.1|BG053950 OV2_2_B10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 540
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| |||||||||||||||
Sbjct: 80 cccgccgtgccggagctgatggcgctctcggccacgtac 42
>gb|BG054173.1|BG054173 OV2_2_B10.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 483
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| |||||||||||||||
Sbjct: 463 cccgccgtgccggagctgatggcgctctcggccacgtac 425
>gb|BG933263.1|BG933263 WS1_92_C06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| |||||||||||||||
Sbjct: 249 cccgccgtgccggagctgatggcgctctcggccacgtac 211
>gb|CN135698.1|CN135698 OX1_38_A10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_38_A10_A002 5', mRNA sequence
Length = 799
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| |||||||||||||||
Sbjct: 477 cccgccgtgccggagctgatggcgctctcggccacgtac 439
>gb|CX617447.1|CX617447 GABR1_33_G02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_33_G02_A002 5', mRNA sequence
Length = 766
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| |||||||||||||||
Sbjct: 531 cccgccgtgccggagctgatggcgctctcggccacgtac 493
>gb|CD228912.1|CD228912 CCC1_10_B02.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_10_B02_A007 5', mRNA sequence
Length = 591
Score = 48.1 bits (24), Expect = 8e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 155 gttcttttgcattgataattctggatgttgcaactaaagg 194
||||||||||| | |||||||||||||| || ||||||||
Sbjct: 479 gttcttttgcaataataattctggatgtggccactaaagg 518
>gb|CW476863.1|CW476863 fsbb001f233o16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233o16, DNA
sequence
Length = 624
Score = 44.1 bits (22), Expect = 0.012
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 281 ttggcgacctttctttaatgtgcccagagttcattcag 318
|||| ||||| || || |||||||||||||||||||||
Sbjct: 279 ttggtgacctatccttgatgtgcccagagttcattcag 316
>gb|CW476862.1|CW476862 fsbb001f233o16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233o16, DNA
sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 298 atgtgcccagagttcattcag 318
|||||||||||||||||||||
Sbjct: 636 atgtgcccagagttcattcag 616
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 134,516
Number of Sequences: 832831
Number of extensions: 134516
Number of successful extensions: 38223
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38198
Number of HSP's gapped (non-prelim): 24
length of query: 511
length of database: 491,359,669
effective HSP length: 19
effective length of query: 492
effective length of database: 475,535,880
effective search space: 233963652960
effective search space used: 233963652960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)