BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA10g02.yg.2.1
(277 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW026127.1|CW026127 104_252_10497773_114_30510 Sorghum m... 442 e-123
gb|CW202854.1|CW202854 104_629_11185318_116_36915_091 Sorgh... 442 e-123
gb|CL704230.2|CL704230 SP__Bb0012G11.f SP__Bb Sorghum propi... 418 e-115
gb|CL701718.2|CL701718 SP__Ba0076G02.r SP__Ba Sorghum propi... 291 2e-077
gb|BG054150.1|BG054150 OV2_1_H05.b1_A002 Ovary 2 (OV2) Sorg... 218 2e-055
gb|CW388976.1|CW388976 fsbb001f073p13f0 Sorghum methylation... 206 8e-052
gb|BZ366846.1|BZ366846 ic99f12.g1 WGS-SbicolorF (JM107 adap... 38 0.40
>gb|CW026127.1|CW026127 104_252_10497773_114_30510 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10497773, DNA
sequence
Length = 706
Score = 442 bits (223), Expect = e-123
Identities = 264/277 (95%), Gaps = 3/277 (1%)
Strand = Plus / Plus
Query: 1 actggcctcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgca 60
|||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 409 actggcttcccatttccaacctgctctcccagagccttggacatgttcaggatatgcgca 468
Query: 61 agagctccatcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtattta 120
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 469 agagctccatcgacaaattcttggaggtaaggccacagcgcttccttcttgaggtattta 528
Query: 121 tcccgtggtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctct 180
|| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 529 tcgcgtggcccacacggtatgcgcacaatgtaggctccggcactctcgcc---cccctct 585
Query: 181 ccatcgttggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtca 240
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 586 ccatcattggaaccggagcataacatctccgttggctcaccatagctccagtccacgtca 645
Query: 241 ggagatgacacttgacgagtgaagaggtccaccctgt 277
|||||||||||||||||||||||||||||||||||||
Sbjct: 646 ggagatgacacttgacgagtgaagaggtccaccctgt 682
>gb|CW202854.1|CW202854 104_629_11185318_116_36915_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185318, DNA
sequence
Length = 635
Score = 442 bits (223), Expect = e-123
Identities = 264/277 (95%), Gaps = 3/277 (1%)
Strand = Plus / Plus
Query: 1 actggcctcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgca 60
|||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 126 actggcttcccatttccaacctgctctcccagagccttggacatgttcaggatatgcgca 185
Query: 61 agagctccatcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtattta 120
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 186 agagctccatcgacaaattcttggaggtaaggccacagcgcttccttcttgaggtattta 245
Query: 121 tcccgtggtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctct 180
|| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 246 tcgcgtggcccacacggtatgcgcacaatgtaggctccggcactctcgcc---cccctct 302
Query: 181 ccatcgttggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtca 240
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 303 ccatcattggaaccggagcataacatctccgttggctcaccatagctccagtccacgtca 362
Query: 241 ggagatgacacttgacgagtgaagaggtccaccctgt 277
|||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggagatgacacttgacgagtgaagaggtccaccctgt 399
>gb|CL704230.2|CL704230 SP__Bb0012G11.f SP__Bb Sorghum propinquum genomic clone
SP__Bb0012G11 5', DNA sequence
Length = 734
Score = 418 bits (211), Expect = e-115
Identities = 261/277 (94%), Gaps = 3/277 (1%)
Strand = Plus / Plus
Query: 1 actggcctcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgca 60
|||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 289 actggcttcccatttccaacctgctctcccagagccttggacatgttcaggatatgcgca 348
Query: 61 agagctccatcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtattta 120
||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||
Sbjct: 349 agagctccatcgacaaattcttggaggtaaggccacagcgcttccttcttgagggggtta 408
Query: 121 tcccgtggtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctct 180
|| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 409 tcgcgtggcccacacggtatgcgcacaatgtaggctccggcactctcgcc---cccctct 465
Query: 181 ccatcgttggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtca 240
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 466 ccatcattggaaccggagcataacatctccgttggctcaccatagctccagtccacgtca 525
Query: 241 ggagatgacacttgacgagtgaagaggtccaccctgt 277
|||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggagatgacacttgacgagtgaagaggtccaccctgt 562
>gb|CL701718.2|CL701718 SP__Ba0076G02.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0076G02 3', DNA sequence
Length = 596
Score = 291 bits (147), Expect = 2e-077
Identities = 185/197 (93%), Gaps = 3/197 (1%)
Strand = Plus / Minus
Query: 81 ttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtggtccacacggtat 140
|||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct: 596 ttggaggtaaggccacagcgcttccttcttgaggtatttatcgcgtgacccacacggtat 537
Query: 141 gcgcacaatgtaggctccggcactctcacccatcccctctccatcgttggaaccggagca 200
||||||||||||||||||||||||||| ||| |||||| |||| ||||| ||||||||
Sbjct: 536 gcgcacaatgtaggctccggcactctcgccc---ccctcttcatcattggatccggagca 480
Query: 201 taacatctccgtcggctcaccatagctccagtccacgtcaggagatgacacttgacgagt 260
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 taacatctccgttggctcaccatagctccagtccacgtcaggagatgacacttgacgagt 420
Query: 261 gaagaggtccaccctgt 277
|||||||||||||||||
Sbjct: 419 gaagaggtccaccctgt 403
>gb|BG054150.1|BG054150 OV2_1_H05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 461
Score = 218 bits (110), Expect = 2e-055
Identities = 131/138 (94%)
Strand = Plus / Minus
Query: 1 actggcctcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgca 60
|||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 146 actggcttcccatttccaacctgctctcccagagccttggacatgttcaggatatgcgca 87
Query: 61 agagctccatcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtattta 120
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 86 agagctccatcgacaaattcttggaggtaaggccacagcgcttccttcttgaggtattta 27
Query: 121 tcccgtggtccacacggt 138
|| ||||| |||||||||
Sbjct: 26 tcgcgtggcccacacggt 9
>gb|CW388976.1|CW388976 fsbb001f073p13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073p13, DNA
sequence
Length = 602
Score = 206 bits (104), Expect = 8e-052
Identities = 124/130 (95%), Gaps = 3/130 (2%)
Strand = Plus / Plus
Query: 148 atgtaggctccggcactctcacccatcccctctccatcgttggaaccggagcataacatc 207
|||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||
Sbjct: 1 atgtaggctccggcactctcgccc---ccctctccatcattggaaccggagcataacatc 57
Query: 208 tccgtcggctcaccatagctccagtccacgtcaggagatgacacttgacgagtgaagagg 267
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 tccgttggctcaccatagctccagtccacgtcaggagatgacacttgacgagtgaagagg 117
Query: 268 tccaccctgt 277
||||||||||
Sbjct: 118 tccaccctgt 127
>gb|BZ366846.1|BZ366846 ic99f12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic99f12 5', DNA sequence
Length = 671
Score = 38.2 bits (19), Expect = 0.40
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 actggcctcccatttccaacctg 23
|||||| ||||||||||||||||
Sbjct: 645 actggcttcccatttccaacctg 667
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,685
Number of Sequences: 832831
Number of extensions: 53685
Number of successful extensions: 14051
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14039
Number of HSP's gapped (non-prelim): 7
length of query: 277
length of database: 491,359,669
effective HSP length: 19
effective length of query: 258
effective length of database: 475,535,880
effective search space: 122688257040
effective search space used: 122688257040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)