BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.006B01F020311.3.1
(609 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE358332.1|BE358332 DG1_29_C02.b1_A002 Dark Grown 1 (DG1... 270 1e-070
gb|CD424983.1|CD424983 SA1_9_H04.g1_A002 Salicylic acid-tre... 270 1e-070
gb|BM323368.1|BM323368 PIC1_18_E04.b1_A002 Pathogen-infecte... 252 3e-065
gb|CD424271.1|CD424271 SA1_4_H05.g1_A002 Salicylic acid-tre... 248 5e-064
gb|CW288352.1|CW288352 104_766_11411905_148_35533_001 Sorgh... 242 3e-062
gb|CD230559.1|CD230559 SS1_44_G04.g1_A012 Salt-stressed see... 242 3e-062
gb|BI075789.1|BI075789 IP1_21_C05.b1_A002 Immature pannicle... 240 1e-061
gb|BI075931.1|BI075931 IP1_23_B05.b1_A002 Immature pannicle... 240 1e-061
gb|CD232496.1|CD232496 SS1_45_A09.g1_A012 Salt-stressed see... 212 3e-053
gb|BI140713.1|BI140713 IP1_52_H01.b1_A002 Immature pannicle... 208 4e-052
gb|BG560033.1|BG560033 RHIZ2_68_F03.b1_A003 Rhizome2 (RHIZ2... 202 3e-050
gb|BG556638.1|BG556638 EM1_37_G04.b1_A002 Embryo 1 (EM1) So... 159 4e-037
gb|CW262291.1|CW262291 104_729_11229977_116_35209_067 Sorgh... 157 1e-036
gb|CW469202.1|CW469202 fsbb001f221m21f0 Sorghum methylation... 151 9e-035
gb|BI098360.1|BI098360 IP1_31_E11.b1_A002 Immature pannicle... 145 5e-033
gb|CD231662.1|CD231662 SS1_22_F04.g1_A012 Salt-stressed see... 141 9e-032
gb|CW327350.1|CW327350 104_823_11478699_116_35979_016 Sorgh... 121 8e-026
gb|CW792157.1|CW792157 SP__Ba0089F13.f SP__Ba Sorghum propi... 119 3e-025
gb|CF431332.1|CF431332 NIT1_5_E04.g1_A002 Nitrogen-deficien... 107 1e-021
gb|BZ345347.1|BZ345347 hr49h09.b1 WGS-SbicolorF (JM107 adap... 105 5e-021
gb|CW288351.1|CW288351 104_766_11411905_116_35529_001 Sorgh... 94 2e-017
gb|BG488202.1|BG488202 RHIZ2_60_G05.b1_A003 Rhizome2 (RHIZ2... 94 2e-017
gb|CW327351.1|CW327351 104_823_11478699_148_35980_016 Sorgh... 88 1e-015
gb|BG273563.1|BG273563 OV2_27_C04.b1_A002 Ovary 2 (OV2) Sor... 82 7e-014
gb|BG322938.1|BG322938 EM1_15_H09.b1_A002 Embryo 1 (EM1) So... 76 4e-012
gb|CF072403.1|CF072403 FE1_2_H07.g1_A002 Iron-deficient see... 68 1e-009
gb|CW169583.1|CW169583 104_579_11154749_116_36503_021 Sorgh... 62 6e-008
gb|CW206795.1|CW206795 104_635_11187778_148_36966_037 Sorgh... 62 6e-008
gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING... 62 6e-008
gb|CW262292.1|CW262292 104_729_11229977_148_35205_067 Sorgh... 60 2e-007
gb|CW469203.1|CW469203 fsbb001f221m21k0 Sorghum methylation... 58 1e-006
gb|CX622776.1|CX622776 GABR1_65_H12.g1_A002 GA- or brassino... 50 2e-004
gb|CW122132.1|CW122132 104_500_11110443_116_34667_004 Sorgh... 48 0.001
gb|BI351404.1|BI351404 IP1_71_B10.b1_A002 Immature pannicle... 46 0.004
gb|CN133998.1|CN133998 OX1_19_D01.g1_A002 Oxidatively-stres... 46 0.004
gb|CW315229.1|CW315229 104_806_11472253_148_35827_059 Sorgh... 44 0.015
>gb|BE358332.1|BE358332 DG1_29_C02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 610
Score = 270 bits (136), Expect = 1e-070
Identities = 313/372 (84%)
Strand = Plus / Plus
Query: 141 aaccctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttgg 200
||||||||||||||||||| ||||| ||||||| || |||||||| || ||||| ||||
Sbjct: 198 aaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacattatttgg 257
Query: 201 ggtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcag 260
| | || ||||||||||| ||| | ||| || ||||| ||||||||||| || ||||
Sbjct: 258 gatattttttgaggagattaaccatgcaggggccggtggcatatgggcagagcttgtcaa 317
Query: 261 caacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcat 320
||||||||||||||||| |||||||| |||||||||| ||||||||||| ||| |||
Sbjct: 318 taacagaggtttcgaagctggaggccctcatactccatcaaacattgacccgtggtccat 377
Query: 321 cgttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaa 380
| |||| || |||||||| | | |||| |||||||||| | ||||||||||| |||||
Sbjct: 378 cattggagatgactcctctatattcgtggcgactgatcgtacatcatgtttcagccgaaa 437
Query: 381 catcgttgctctaaggatggaggtcctctgcaatgactgcccggctggcggtgttggcat 440
||| |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| |
Sbjct: 438 cattgttgctctgaggatggaggtcctctgtaatgactgtccagctggtggtgttggtgt 497
Query: 441 ttacaaccctggattctggggcatgaacatagaagatggaaagacatatcatctagttat 500
||||||||| || || ||||||||||||||||||||||| ||| | || |||| |||||
Sbjct: 498 ttacaacccaggtttttggggcatgaacatagaagatgggaaggcttacaatcttgttat 557
Query: 501 gtatgttaagtc 512
||||||||||||
Sbjct: 558 gtatgttaagtc 569
>gb|CD424983.1|CD424983 SA1_9_H04.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_H04_A002 5', mRNA sequence
Length = 704
Score = 270 bits (136), Expect = 1e-070
Identities = 313/372 (84%)
Strand = Plus / Plus
Query: 141 aaccctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttgg 200
||||||||||||||||||| ||||| ||||||| || |||||||| || ||||| ||||
Sbjct: 202 aaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacattatttgg 261
Query: 201 ggtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcag 260
| | || ||||||||||| ||| | ||| || ||||| ||||||||||| || ||||
Sbjct: 262 gatattttttgaggagattaaccatgcaggggccggtggcatatgggcagagcttgtcaa 321
Query: 261 caacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcat 320
||||||||||||||||| |||||||| |||||||||| ||||||||||| ||| |||
Sbjct: 322 taacagaggtttcgaagctggaggccctcatactccatcaaacattgacccgtggtccat 381
Query: 321 cgttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaa 380
| |||| || |||||||| | | |||| |||||||||| | ||||||||||| |||||
Sbjct: 382 cattggagatgactcctctatattcgtggcgactgatcgtacatcatgtttcagccgaaa 441
Query: 381 catcgttgctctaaggatggaggtcctctgcaatgactgcccggctggcggtgttggcat 440
||| |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| |
Sbjct: 442 cattgttgctctgaggatggaggtcctctgtaatgactgtccagctggtggtgttggtgt 501
Query: 441 ttacaaccctggattctggggcatgaacatagaagatggaaagacatatcatctagttat 500
||||||||| || || ||||||||||||||||||||||| ||| | || |||| |||||
Sbjct: 502 ttacaacccaggtttttggggcatgaacatagaagatgggaaggcttacaatcttgttat 561
Query: 501 gtatgttaagtc 512
||||||||||||
Sbjct: 562 gtatgttaagtc 573
>gb|BM323368.1|BM323368 PIC1_18_E04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 532
Score = 252 bits (127), Expect = 3e-065
Identities = 286/339 (84%)
Strand = Plus / Plus
Query: 141 aaccctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttgg 200
||||||||||||||||||| ||||| ||||||| || |||||||| || ||||| ||||
Sbjct: 170 aaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacattatttgg 229
Query: 201 ggtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcag 260
| | || ||||||||||| ||| | ||| || ||||| ||||||||||| || ||||
Sbjct: 230 gatattttttgaggagattaaccatgcaggggccggtggcatatgggcagagcttgtcaa 289
Query: 261 caacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcat 320
||||||||||||||||| |||||||| |||||||||| ||||||||||| ||| |||
Sbjct: 290 taacagaggtttcgaagctggaggccctcatactccatcaaacattgacccgtggtccat 349
Query: 321 cgttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaa 380
| |||| || |||||||| | | |||| |||||||||| | ||||||||||| |||||
Sbjct: 350 cattggagatgactcctctatattcgtggcgactgatcgtacatcatgtttcagccgaaa 409
Query: 381 catcgttgctctaaggatggaggtcctctgcaatgactgcccggctggcggtgttggcat 440
||| |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| |
Sbjct: 410 cattgttgctctgaggatggaggtcctctgtaatgactgtccagctggtggtgttggtgt 469
Query: 441 ttacaaccctggattctggggcatgaacatagaagatgg 479
||||||||| || || |||||||||||||||||||||||
Sbjct: 470 ttacaacccaggtttttggggcatgaacatagaagatgg 508
>gb|CD424271.1|CD424271 SA1_4_H05.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_4_H05_A002 5', mRNA sequence
Length = 661
Score = 248 bits (125), Expect = 5e-064
Identities = 284/337 (84%)
Strand = Plus / Plus
Query: 141 aaccctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttgg 200
||||||||||||||||||| ||||| ||||||| || |||||||| || ||||| ||||
Sbjct: 325 aaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacattatttgg 384
Query: 201 ggtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcag 260
| | || ||||||||||| ||| | ||| || ||||| ||||||||||| || ||||
Sbjct: 385 gatattttttgaggagattaaccatgcaggggccggtggcatatgggcagagcttgtcaa 444
Query: 261 caacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcat 320
||||||||||||||||| |||||||| |||||||||| ||||||||||| ||| |||
Sbjct: 445 taacagaggtttcgaagctggaggccctcatactccatcaaacattgacccgtggtccat 504
Query: 321 cgttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaa 380
| |||| || |||||||| | | |||| |||||||||| | ||||||||||| |||||
Sbjct: 505 cattggagatgactcctctatattcgtggcgactgatcgtacatcatgtttcagccgaaa 564
Query: 381 catcgttgctctaaggatggaggtcctctgcaatgactgcccggctggcggtgttggcat 440
||| |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| |
Sbjct: 565 cattgttgctctgaggatggaggtcctctgtaatgactgtccagctggtggtgttggtgt 624
Query: 441 ttacaaccctggattctggggcatgaacatagaagat 477
||||||||| || || |||||||||||||||||||||
Sbjct: 625 ttacaacccaggtttttggggcatgaacatagaagat 661
>gb|CW288352.1|CW288352 104_766_11411905_148_35533_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411905, DNA
sequence
Length = 679
Score = 242 bits (122), Expect = 3e-062
Identities = 190/212 (89%), Gaps = 3/212 (1%)
Strand = Plus / Plus
Query: 8 gcaagtcgaagcgcacgggttccaattcgatggaaggaccgccccgtaccctcatccacc 67
||||||| ||||||| |||||||||||| |||||||||| ||||||||| | |||||
Sbjct: 63 gcaagtcaaagcgcatgggttccaattccatggaaggactcccccgtaccgccgtccact 122
Query: 68 tcctgctcctacttctctgcatagccagcaaatgtctaggaggagcgtcaggtctgaatt 127
|| |||||||| || |||||||||||||||||||||||| || | |||||||||||||
Sbjct: 123 tcttgctcctaattttctgcatagccagcaaatgtctagcagca---tcaggtctgaatt 179
Query: 128 caacccagatggtaaccctcaaggttgatgcctcgccaaagcttgctcgaaagatccccg 187
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 180 caacccagatggtaaccctcaaggttgatgcctcaccaaagcttgctcgaaagatccctg 239
Query: 188 atacattccttggggtgttctttgaggagatg 219
||| ||||||||||||||| ||||||| ||||
Sbjct: 240 atatattccttggggtgttttttgaggtgatg 271
Score = 93.7 bits (47), Expect = 2e-017
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 212 aggagatgggccacggaggagctggtgggatatgggcagaactggtcagcaacagaggt 270
||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 381 aggagatgggcaacggaggagctggtggaatatgggcagaactggtcagtaacagaggt 439
>gb|CD230559.1|CD230559 SS1_44_G04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_44_G04_A012 5', mRNA sequence
Length = 507
Score = 242 bits (122), Expect = 3e-062
Identities = 190/212 (89%), Gaps = 3/212 (1%)
Strand = Plus / Plus
Query: 8 gcaagtcgaagcgcacgggttccaattcgatggaaggaccgccccgtaccctcatccacc 67
||||||| ||||||| |||||||||||| |||||||||| ||||||||| | |||||
Sbjct: 135 gcaagtcaaagcgcatgggttccaattccatggaaggactcccccgtaccgccgtccact 194
Query: 68 tcctgctcctacttctctgcatagccagcaaatgtctaggaggagcgtcaggtctgaatt 127
|| |||||||| || |||||||||||||||||||||||| || | |||||||||||||
Sbjct: 195 tcttgctcctaattttctgcatagccagcaaatgtctagcagca---tcaggtctgaatt 251
Query: 128 caacccagatggtaaccctcaaggttgatgcctcgccaaagcttgctcgaaagatccccg 187
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 252 caacccagatggtaaccctcaaggttgatgcctcaccaaagcttgctcgaaagatccctg 311
Query: 188 atacattccttggggtgttctttgaggagatg 219
||| ||||||||||||||| ||||||| ||||
Sbjct: 312 atatattccttggggtgttttttgaggtgatg 343
Score = 85.7 bits (43), Expect = 4e-015
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 212 aggagatgggccacggaggagctggtgggatatgggcagaactggtcagcaacag 266
||||||||||| |||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 453 aggagatgggcaacggaggagctggtggaatatgggcagaactggtcagtaacag 507
>gb|BI075789.1|BI075789 IP1_21_C05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 577
Score = 240 bits (121), Expect = 1e-061
Identities = 176/193 (91%), Gaps = 1/193 (0%)
Strand = Plus / Plus
Query: 406 ctctgcaatgactgcccggctggcggtgttggcatttacaaccctggattctggggcatg 465
||||||||||||||||| || || |||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctctgcaatgactgcccagccggtggtgttggcatttacaacccaggattctggggcatg 60
Query: 466 aacatagaagatggaaagacatatcatctagttatgtatgttaagtcgccaaaaaccaca 525
|||||||||||||| ||| |||| |||||||||||||||||||||||||||||| |||
Sbjct: 61 aacatagaagatgggaaggcatacaatctagttatgtatgttaagtcgccaaaaaataca 120
Query: 526 tgcttgacagtttcgctgacaagctctgatgggttgcagaatctggcttcaggttaccat 585
|||||||||||||| || |||||||| ||||||||||| ||||||||||| |||| |||
Sbjct: 121 tgcttgacagtttcactaacaagctcagatgggttgcaaaatctggcttc-cgttaacat 179
Query: 586 aatagttgcaggg 598
|||||||||||||
Sbjct: 180 aatagttgcaggg 192
>gb|BI075931.1|BI075931 IP1_23_B05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 376
Score = 240 bits (121), Expect = 1e-061
Identities = 176/193 (91%), Gaps = 1/193 (0%)
Strand = Plus / Plus
Query: 406 ctctgcaatgactgcccggctggcggtgttggcatttacaaccctggattctggggcatg 465
||||||||||||||||| || || |||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctctgcaatgactgcccagccggtggtgttggcatttacaacccaggattctggggcatg 60
Query: 466 aacatagaagatggaaagacatatcatctagttatgtatgttaagtcgccaaaaaccaca 525
|||||||||||||| ||| |||| |||||||||||||||||||||||||||||| |||
Sbjct: 61 aacatagaagatgggaaggcatacaatctagttatgtatgttaagtcgccaaaaaataca 120
Query: 526 tgcttgacagtttcgctgacaagctctgatgggttgcagaatctggcttcaggttaccat 585
|||||||||||||| || |||||||| ||||||||||| ||||||||||| |||| |||
Sbjct: 121 tgcttgacagtttcactaacaagctcagatgggttgcaaaatctggcttc-cgttaacat 179
Query: 586 aatagttgcaggg 598
|||||||||||||
Sbjct: 180 aatagttgcaggg 192
>gb|CD232496.1|CD232496 SS1_45_A09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_45_A09_A012 5', mRNA sequence
Length = 531
Score = 212 bits (107), Expect = 3e-053
Identities = 266/319 (83%)
Strand = Plus / Plus
Query: 161 cgccaaagcttgctcgaaagatccccgatacattccttggggtgttctttgaggagatgg 220
||||| ||||||| || |||||||| || ||||| ||||| | || |||||||||||
Sbjct: 209 cgccacagcttgcccggaagatccctgaaacattatttgggatattttttgaggagatta 268
Query: 221 gccacggaggagctggtgggatatgggcagaactggtcagcaacagaggtttcgaagcag 280
||| | ||| || ||||| ||||||||||| || |||| ||||||||||||||||| |
Sbjct: 269 accatgcaggggccggtggcatatgggcagagcttgtcaataacagaggtttcgaagctg 328
Query: 281 gaggccccaatactccatcgaacattgacccctggctcatcgttggggacgactcctccg 340
||||||| |||||||||| ||||||||||| ||| |||| |||| || ||||||||
Sbjct: 329 gaggccctcatactccatcaaacattgacccgtggtccatcattggagatgactcctcta 388
Query: 341 tctatgtggagactgatcgttcgtcatgtttcagtcgaaacatcgttgctctaaggatgg 400
| | ||| |||||||||| | ||||||||||| |||||||| |||||||| |||||||
Sbjct: 389 tattcatggcgactgatcgtacatcatgtttcagccgaaacattgttgctctgaggatgg 448
Query: 401 aggtcctctgcaatgactgcccggctggcggtgttggcatttacaaccctggattctggg 460
|||||||||| |||||||| || ||||| |||||||| |||||||||| || || ||||
Sbjct: 449 aggtcctctgtaatgactgtccagctggtggtgttggtgtttacaacccaggtttttggg 508
Query: 461 gcatgaacatagaagatgg 479
|||||||||||||||||||
Sbjct: 509 gcatgaacatagaagatgg 527
>gb|BI140713.1|BI140713 IP1_52_H01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 457
Score = 208 bits (105), Expect = 4e-052
Identities = 186/213 (87%)
Strand = Plus / Plus
Query: 365 catgtttcagtcgaaacatcgttgctctaaggatggaggtcctctgcaatgactgcccgg 424
|||||||||||||||||||| ||||||| |||||||||||||| ||| || |||| ||
Sbjct: 9 catgtttcagtcgaaacatcattgctctgaggatggaggtcctttgcgataactgtccta 68
Query: 425 ctggcggtgttggcatttacaaccctggattctggggcatgaacatagaagatggaaaga 484
|||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 69 ctggtggtgttggtatttacaacccagggttctggggcatgaacatagaagatggaaagg 128
Query: 485 catatcatctagttatgtatgttaagtcgccaaaaaccacatgcttgacagtttcgctga 544
| || |||| ||||||||||||||||| ||| |||| || ||||| |||||| || |
Sbjct: 129 cctacaatcttgttatgtatgttaagtcaccagaaacaaccgacttgatagtttcactaa 188
Query: 545 caagctctgatgggttgcagaatctggcttcag 577
||||||||||||||||||| |||||||||||||
Sbjct: 189 caagctctgatgggttgcaaaatctggcttcag 221
>gb|BG560033.1|BG560033 RHIZ2_68_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 489
Score = 202 bits (102), Expect = 3e-050
Identities = 225/266 (84%)
Strand = Plus / Plus
Query: 142 accctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttggg 201
||||||| ||| ||||||||||| |||||||||| |||||||| |||||| | |||||
Sbjct: 202 accctcacggtcgatgcctcgccgcagcttgctcggaagatccctgatacactatttggg 261
Query: 202 gtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagc 261
| |||||||||||||| ||| | |||||||||||| |||||||| ||||| || ||
Sbjct: 262 atcttctttgaggagatcaaccatgcaggagctggtggcatatgggctgaacttgttagt 321
Query: 262 aacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcatc 321
||||||||||| ||||| ||||||| | |||||||||| ||||||||||| ||| ||||
Sbjct: 322 aacagaggttttgaagctggaggcctccatactccatcaaacattgacccatggtccatc 381
Query: 322 gttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaac 381
|||| || ||||| || | ||||||||||||||||| | ||||||||||||||||||
Sbjct: 382 attggagatgactcttctatatatgtggagactgatcggacatcatgtttcagtcgaaac 441
Query: 382 atcgttgctctaaggatggaggtcct 407
||| ||||||| ||||||||||||||
Sbjct: 442 atcattgctctgaggatggaggtcct 467
>gb|BG556638.1|BG556638 EM1_37_G04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 450
Score = 159 bits (80), Expect = 4e-037
Identities = 209/252 (82%)
Strand = Plus / Plus
Query: 141 aaccctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttgg 200
||||||||||||||||||| ||||| ||||||| || |||||||| || ||||| ||||
Sbjct: 198 aaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacattatttgg 257
Query: 201 ggtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcag 260
| | || ||||||||||| ||| | ||| || ||||| ||||||||||| || ||||
Sbjct: 258 gatattttttgaggagattaaccatgcaggggccggtggcatatgggcagagcttgtcaa 317
Query: 261 caacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcat 320
||||||||||||||||| |||||||| |||||||||| ||||||||||| ||| |||
Sbjct: 318 taacagaggtttcgaagctggaggccctcatactccatcaaacattgacccgtggtccat 377
Query: 321 cgttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaa 380
| |||| || |||||||| | | |||| |||||||||| | ||||||||||| |||||
Sbjct: 378 cattggagatgactcctctatattcgtggcgactgatcgtacatcatgtttcagccgaaa 437
Query: 381 catcgttgctct 392
||| ||||||||
Sbjct: 438 cattgttgctct 449
>gb|CW262291.1|CW262291 104_729_11229977_116_35209_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229977, DNA
sequence
Length = 616
Score = 157 bits (79), Expect = 1e-036
Identities = 169/199 (84%)
Strand = Plus / Minus
Query: 267 aggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcatcgttgg 326
|||||||||||| |||||||| |||||||||| ||||||||||| ||| |||| ||||
Sbjct: 585 aggtttcgaagctggaggccctcatactccatcaaacattgacccgtggtccatcattgg 526
Query: 327 ggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaacatcgt 386
|| |||||||| | | |||| |||||||||| | ||||||||||| |||||||| ||
Sbjct: 525 agatgactcctctatattcgtggcgactgatcgtacatcatgtttcagccgaaacattgt 466
Query: 387 tgctctaaggatggaggtcctctgcaatgactgcccggctggcggtgttggcatttacaa 446
|||||| ||||||||||||||||| |||||||| || ||||| |||||||| |||||||
Sbjct: 465 tgctctgaggatggaggtcctctgtaatgactgtccagctggtggtgttggtgtttacaa 406
Query: 447 ccctggattctggggcatg 465
||| || || |||||||||
Sbjct: 405 cccaggtttttggggcatg 387
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 465 gaacatagaagatggaaagacatatcatctagttatgtatgttaagtc 512
||||||||||||||| ||| | || |||| |||||||||||||||||
Sbjct: 72 gaacatagaagatgggaaggcttacaatcttgttatgtatgttaagtc 25
>gb|CW469202.1|CW469202 fsbb001f221m21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221m21, DNA
sequence
Length = 709
Score = 151 bits (76), Expect = 9e-035
Identities = 163/192 (84%)
Strand = Plus / Minus
Query: 274 gaagcaggaggccccaatactccatcgaacattgacccctggctcatcgttggggacgac 333
||||| ||||||| | |||||||||| ||||||||||| ||| |||| |||| || |||
Sbjct: 275 gaagctggaggcctccatactccatcaaacattgacccatggtccatcattggagatgac 216
Query: 334 tcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaacatcgttgctcta 393
|| || | ||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct: 215 tcttctatatatgtggagactgatcggacatcatgtttcagtcgaaacatcattgctctg 156
Query: 394 aggatggaggtcctctgcaatgactgcccggctggcggtgttggcatttacaaccctgga 453
|||||||||||||| ||| || |||| || |||| |||||||| ||||||||||| ||
Sbjct: 155 aggatggaggtcctttgcgataactgtcctactggtggtgttggtatttacaacccaggg 96
Query: 454 ttctggggcatg 465
||||||||||||
Sbjct: 95 ttctggggcatg 84
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 228 aggagctggtgggatatgggcagaactggtcagcaacagaggt 270
|||||||||||| |||||||| ||||| || || |||||||||
Sbjct: 514 aggagctggtggcatatgggctgaacttgttagtaacagaggt 472
>gb|BI098360.1|BI098360 IP1_31_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 483
Score = 145 bits (73), Expect = 5e-033
Identities = 209/253 (82%), Gaps = 1/253 (0%)
Strand = Plus / Plus
Query: 141 aaccctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttgg 200
||||||||||||||||||| ||||| ||||||| || |||||||| || ||||| ||||
Sbjct: 224 aaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacattatttgg 283
Query: 201 ggtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcag 260
| | || ||||||||||| ||| | ||| || ||||| ||||||||||| || ||||
Sbjct: 284 gatattttttgaggagattaaccatgcaggggccggtggcatatgggcagagcttgtcaa 343
Query: 261 caacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcat 320
||||||||||||||||| |||||||| |||||||||| ||||||||||| ||| |||
Sbjct: 344 taacagaggtttcgaagctggaggccctcatactccatcaaacattgacccgtggtccat 403
Query: 321 cgttggggacgactcctccgtctatgtggagactgatcgt-tcgtcatgtttcagtcgaa 379
| |||| || |||||||| | | |||| |||||||||| | ||||||||||| ||||
Sbjct: 404 cattggagatgactcctctatattcgtggcgactgatcgtaccatcatgtttcagccgaa 463
Query: 380 acatcgttgctct 392
|||| ||||||||
Sbjct: 464 acattgttgctct 476
>gb|CD231662.1|CD231662 SS1_22_F04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_F04_A012 5', mRNA sequence
Length = 720
Score = 141 bits (71), Expect = 9e-032
Identities = 207/251 (82%), Gaps = 1/251 (0%)
Strand = Plus / Plus
Query: 141 aaccctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttgg 200
||||||||||||||||||| ||||| ||||||| || |||||||| || ||||| ||||
Sbjct: 470 aaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacattatttgg 529
Query: 201 ggtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcag 260
| | || ||||||||||| ||| | ||| || ||||| ||||||||||| || ||||
Sbjct: 530 gatattttttgaggagattaaccatgcaggggccggtggcatatgggcagagcttgtcaa 589
Query: 261 caacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcat 320
||||||||||||||||| |||||||| |||||||||| ||||||||||| ||| |||
Sbjct: 590 taacagaggtttcgaagctggaggccctcatactccatcaaacattgacccgtggtccat 649
Query: 321 cgttggg-gacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaa 379
| ||||| || |||||||| | | ||| |||||||||| | ||||||||||| ||||
Sbjct: 650 cattgggagatgactcctctatattcatggcgactgatcgtacatcatgtttcagccgaa 709
Query: 380 acatcgttgct 390
|||| ||||||
Sbjct: 710 acattgttgct 720
>gb|CW327350.1|CW327350 104_823_11478699_116_35979_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478699, DNA
sequence
Length = 291
Score = 121 bits (61), Expect = 8e-026
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 267 aggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcatcgttgg 326
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 219 aggtttcgaagcaggaggccccaatactccgtcaaacattgacccctggctcatcgttgg 278
Query: 327 ggacgactcctcc 339
||||||||||||
Sbjct: 279 cgacgactcctcc 291
>gb|CW792157.1|CW792157 SP__Ba0089F13.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0089F13 5', DNA sequence
Length = 196
Score = 119 bits (60), Expect = 3e-025
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 267 aggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcatcgttgg 326
|||||| ||||| ||||||| | |||||||||| ||||||||||| |||| |||| ||||
Sbjct: 61 aggttttgaagctggaggcctccatactccatcaaacattgacccatggcccatcattgg 120
Query: 327 ggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaacatcgt 386
|| ||||| || | ||||||||||||||||| | ||||||||||||||||||||| |
Sbjct: 121 agatgactcttctatatatgtggagactgatcggacatcatgtttcagtcgaaacatcat 180
Query: 387 tgctctaaggatggag 402
|||||| |||||||||
Sbjct: 181 tgctctgaggatggag 196
>gb|CF431332.1|CF431332 NIT1_5_E04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_5_E04_A002 5', mRNA sequence
Length = 266
Score = 107 bits (54), Expect = 1e-021
Identities = 123/146 (84%)
Strand = Plus / Plus
Query: 262 aacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcatc 321
|||||||| || ||||| ||||||| | |||||||||| ||||||||||| ||| ||||
Sbjct: 97 aacagagggtttgaagctggaggcctccatactccatcaaacattgacccatggtccatc 156
Query: 322 gttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaac 381
|||| || ||||| || | ||||||||||||||||| | ||||||||||| | ||||
Sbjct: 157 attggagatgactcttctatatatgtggagactgatcggacatcatgtttcagcccaaac 216
Query: 382 atcgttgctctaaggatggaggtcct 407
||| ||||||| ||||||||||||||
Sbjct: 217 atcattgctctgaggatggaggtcct 242
>gb|BZ345347.1|BZ345347 hr49h09.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr49h09 5', DNA sequence
Length = 493
Score = 105 bits (53), Expect = 5e-021
Identities = 98/113 (86%)
Strand = Plus / Plus
Query: 465 gaacatagaagatggaaagacatatcatctagttatgtatgttaagtcgccaaaaaccac 524
||||||||||||||||||| | || |||| ||||||||||||||||| ||| |||| ||
Sbjct: 147 gaacatagaagatggaaaggcctacaatcttgttatgtatgttaagtcaccagaaacaac 206
Query: 525 atgcttgacagtttcgctgacaagctctgatgggttgcagaatctggcttcag 577
||||| |||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 207 cgacttgatagtttcactaacaagctctgatgggttgcaaaatctggcttcag 259
>gb|CW288351.1|CW288351 104_766_11411905_116_35529_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411905, DNA
sequence
Length = 649
Score = 93.7 bits (47), Expect = 2e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 212 aggagatgggccacggaggagctggtgggatatgggcagaactggtcagcaacagaggt 270
||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 507 aggagatgggcaacggaggagctggtggaatatgggcagaactggtcagtaacagaggt 449
Score = 42.1 bits (21), Expect = 0.059
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 187 gatacattccttggggtgttctttgaggagatg 219
|||| ||||||||||||||| ||||||| ||||
Sbjct: 649 gatatattccttggggtgttttttgaggtgatg 617
>gb|BG488202.1|BG488202 RHIZ2_60_G05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 554
Score = 93.7 bits (47), Expect = 2e-017
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 142 accctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttggg 201
||||||| ||| ||||||||||| |||||||||| |||||||| |||||| | |||||
Sbjct: 423 accctcacggtcgatgcctcgccgcagcttgctcggaagatccctgatacactatttggg 482
Query: 202 gtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagc 261
| |||||||||||||| ||| | |||||||||||| |||||||| ||||| || ||
Sbjct: 483 atcttctttgaggagatcaaccatgcaggagctggtggcatatgggctgaacttgttagt 542
Query: 262 aacagaggttt 272
|||||||||||
Sbjct: 543 aacagaggttt 553
>gb|CW327351.1|CW327351 104_823_11478699_148_35980_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478699, DNA
sequence
Length = 215
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 508 aagtcgccaaaaaccacatgcttgacagtttcgctgacaagctctgatgggttgcagaat 567
||||||||||||| ||||||||||||||||| || |||||||| ||||||||||| |||
Sbjct: 215 aagtcgccaaaaaatacatgcttgacagtttcactaacaagctcagatgggttgcaaaat 156
Query: 568 ctggcttc 575
||||||||
Sbjct: 155 ctggcttc 148
>gb|BG273563.1|BG273563 OV2_27_C04.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 304
Score = 81.8 bits (41), Expect = 7e-014
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 142 accctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttggg 201
||||||| ||| ||||||||||| |||||||||| |||||||| |||||| | |||||
Sbjct: 189 accctcacggtcgatgcctcgccgcagcttgctcggaagatccctgatacactatttggg 248
Query: 202 gtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaact 254
| |||||||||||||| ||| | |||||||||||| |||||||| |||||
Sbjct: 249 atcttctttgaggagatcaaccatgcaggagctggtggcatatgggctgaact 301
>gb|BG322938.1|BG322938 EM1_15_H09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 75.8 bits (38), Expect = 4e-012
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 141 aaccctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttgg 200
||||||||||||||||||| ||||| ||||||| || |||||||| || ||||| ||||
Sbjct: 384 aaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacattatttgg 443
Query: 201 ggtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcag 260
| | || ||||||||||| ||| | ||| || ||||| ||||||||||| || ||||
Sbjct: 444 gatattttttgaggagattaaccatgcaggggccggtggcatatgggcagagcttgtcaa 503
Query: 261 caacagaggt 270
|||||||||
Sbjct: 504 taacagaggt 513
>gb|CF072403.1|CF072403 FE1_2_H07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_2_H07_A002 5', mRNA sequence
Length = 613
Score = 67.9 bits (34), Expect = 1e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 141 aaccctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttgg 200
||||||||||||||||||| ||||| ||||||| || |||||||| || ||||| ||||
Sbjct: 532 aaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacattatttgg 591
Query: 201 ggtgttctttgaggagat 218
| | || |||||||||||
Sbjct: 592 gatattttttgaggagat 609
>gb|CW169583.1|CW169583 104_579_11154749_116_36503_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154749, DNA
sequence
Length = 731
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 367 tgtttcagtcgaaacatcgttgctctaaggatggaggtcctctgcaatgactgcccggct 426
||||||| | |||| || ||||||||||| |||||||| ||||| | | |||| ||
Sbjct: 326 tgtttcactagaaatattgttgctctaagaatggaggttctctgtgacaattgccgaact 385
Query: 427 ggcggtgttggcatttacaaccctggattctggggcatg 465
|| || ||||||||||||||||| |||||||||||||||
Sbjct: 386 gggggcgttggcatttacaacccgggattctggggcatg 424
>gb|CW206795.1|CW206795 104_635_11187778_148_36966_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187778, DNA
sequence
Length = 654
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 367 tgtttcagtcgaaacatcgttgctctaaggatggaggtcctctgcaatgactgcccggct 426
||||||| | |||| || ||||||||||| |||||||| ||||| | | |||| ||
Sbjct: 501 tgtttcactagaaatattgttgctctaagaatggaggttctctgtgacaattgccgaact 560
Query: 427 ggcggtgttggcatttacaaccctggattctggggcatg 465
|| || ||||||||||||||||| |||||||||||||||
Sbjct: 561 gggggcgttggcatttacaacccgggattctggggcatg 599
>gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 138609
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 367 tgtttcagtcgaaacatcgttgctctaaggatggaggtcctctgcaatgactgcccggct 426
||||||| | |||| || ||||||||||| |||||||| ||||| | | |||| ||
Sbjct: 14074 tgtttcactagaaatattgttgctctaagaatggaggttctctgtgacaattgccgaact 14015
Query: 427 ggcggtgttggcatttacaaccctggattctggggcatg 465
|| || ||||||||||||||||| |||||||||||||||
Sbjct: 14014 gggggcgttggcatttacaacccgggattctggggcatg 13976
>gb|CW262292.1|CW262292 104_729_11229977_148_35205_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229977, DNA
sequence
Length = 664
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 141 aaccctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacatt 194
||||||||||||||||||| ||||| ||||||| || |||||||| || |||||
Sbjct: 296 aaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacatt 349
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 267 aggtttcgaagcaggaggccccaatactccatcgaacattgacc 310
|||||||||||| |||||||| |||||||||| ||||||||||
Sbjct: 621 aggtttcgaagctggaggccctcatactccatcaaacattgacc 664
>gb|CW469203.1|CW469203 fsbb001f221m21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221m21, DNA
sequence
Length = 752
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 142 accctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttggg 201
||||||| ||| ||||||||||| |||||||||| |||||||| |||||| | |||||
Sbjct: 459 accctcacggtcgatgcctcgccgcagcttgctcggaagatccctgatacactatttggg 518
Query: 202 gtgttctttgagg 214
| ||||||||||
Sbjct: 519 atcttctttgagg 531
>gb|CX622776.1|CX622776 GABR1_65_H12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_65_H12_A002 5', mRNA sequence
Length = 769
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 229 ggagctggtgggatatgggcagaactggtcagcaacagaggtttcgaagcaggaggcccc 288
|||||||||||| | |||||||| || || ||||||||||| ||||| || || || ||
Sbjct: 200 ggagctggtgggttgtgggcagagcttgtaagcaacagaggattcgaggccggtgggcct 259
Query: 289 aatactccatcgaacattgacccctggctcatcgttgggga 329
||||| || || || ||||| || ||||| ||| |||||||
Sbjct: 260 aatacaccttccaatattgatccatggctgatcattgggga 300
>gb|CW122132.1|CW122132 104_500_11110443_116_34667_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110443, DNA
sequence
Length = 602
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 465 gaacatagaagatggaaagacatatcatctagttatgtatgttaagtc 512
||||||||||||||| ||| | || |||| |||||||||||||||||
Sbjct: 263 gaacatagaagatgggaaggcttacaatcttgttatgtatgttaagtc 310
>gb|BI351404.1|BI351404 IP1_71_B10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 378
Score = 46.1 bits (23), Expect = 0.004
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 259 agcaacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctc 318
|||||||||||||| ||||| || || | |||||||| || ||||||||||| ||| |
Sbjct: 32 agcaacagaggttttgaagctggtggttctaatactccttcaaacattgacccatggttg 91
Query: 319 atcgttgggga 329
||| |||||||
Sbjct: 92 atcattgggga 102
>gb|CN133998.1|CN133998 OX1_19_D01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_19_D01_A002 5', mRNA sequence
Length = 689
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 229 ggagctggtgggatatgggcagaactggtcagcaacagaggtttcgaagcaggaggcccc 288
||||||||||| | ||||| || || || |||||||||||||| ||||| || || |
Sbjct: 480 ggagctggtggattgtgggcggagcttgttagcaacagaggttttgaagctggtggttct 539
Query: 289 aatactccatcgaacattgaccc 311
|||||||| || |||||||||||
Sbjct: 540 aatactccttcaaacattgaccc 562
>gb|CW315229.1|CW315229 104_806_11472253_148_35827_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472253, DNA
sequence
Length = 602
Score = 44.1 bits (22), Expect = 0.015
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 229 ggagctggtgggatatgggcagaactggtcagcaacagaggt 270
|||||||||||| | |||||||| || || ||||||||||||
Sbjct: 227 ggagctggtgggttgtgggcagagcttgtaagcaacagaggt 186
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,984
Number of Sequences: 832831
Number of extensions: 126984
Number of successful extensions: 33320
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33223
Number of HSP's gapped (non-prelim): 77
length of query: 609
length of database: 491,359,669
effective HSP length: 19
effective length of query: 590
effective length of database: 475,535,880
effective search space: 280566169200
effective search space used: 280566169200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)