BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9h08.xg.2.1
(770 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX609976.1|CX609976 ANR1_15_H06.g1_A002 Anaerobic roots ... 563 e-159
gb|CX609893.1|CX609893 ANR1_15_H06.b1_A002 Anaerobic roots ... 343 1e-092
gb|CW226021.1|CW226021 104_663_11204668_116_37214_002 Sorgh... 319 2e-085
gb|CW303280.1|CW303280 104_787_11465156_116_35675_068 Sorgh... 319 2e-085
gb|CW313609.1|CW313609 104_803_11471374_148_35791_081 Sorgh... 319 2e-085
gb|CW492422.1|CW492422 fsbb001f282l05f0 Sorghum methylation... 319 2e-085
gb|CN152138.1|CN152138 WOUND1_80_C01.b1_A002 Wounded leaves... 291 5e-077
gb|CW184184.1|CW184184 104_600_11165019_116_36685_010 Sorgh... 274 1e-071
gb|CL166445.1|CL166445 104_362_10809380_114_31798_212 Sorgh... 268 7e-070
gb|CN152208.1|CN152208 WOUND1_80_C01.g1_A002 Wounded leaves... 264 1e-068
gb|CW309305.1|CW309305 104_798_11469125_116_36239_029 Sorgh... 143 3e-032
gb|CW309306.1|CW309306 104_798_11469125_148_36240_029 Sorgh... 143 3e-032
gb|CW184464.1|CW184464 104_600_11165164_148_36687_004 Sorgh... 129 4e-028
gb|CW039482.1|CW039482 104_272_10505528_114_30389 Sorghum m... 127 2e-027
gb|CW351309.1|CW351309 fsbb001f013a09f0 Sorghum methylation... 117 2e-024
gb|CW184185.1|CW184185 104_600_11165019_148_36686_010 Sorgh... 80 3e-013
gb|CW303281.1|CW303281 104_787_11465156_148_35671_068 Sorgh... 44 0.019
gb|BE593195.1|BE593195 WS1_98_F09.g1_A002 Water-stressed 1 ... 42 0.074
gb|CW053991.1|CW053991 104_294_10516280_114_30182 Sorghum m... 40 0.29
gb|CW177798.1|CW177798 104_591_11159221_116_36611_059 Sorgh... 40 0.29
gb|AW680241.1|AW680241 WS1_50_E07.g1_A002 Water-stressed 1 ... 40 0.29
gb|AW680559.1|AW680559 WS1_5_E11.g1_A002 Water-stressed 1 (... 40 0.29
gb|AW924437.1|AW924437 WS1_69_A05.g1_A002 Water-stressed 1 ... 40 0.29
gb|BE352974.1|BE352974 DG1_2_F12.g1_A002 Dark Grown 1 (DG1)... 40 0.29
gb|BE360950.1|BE360950 DG1_68_A09.g1_A002 Dark Grown 1 (DG1... 40 0.29
gb|BE361973.1|BE361973 DG1_83_C07.g1_A002 Dark Grown 1 (DG1... 40 0.29
gb|BE363695.1|BE363695 WS1_69_A05.g2_A002 Water-stressed 1 ... 40 0.29
gb|BE366863.1|BE366863 PI1_41_A10.g1_A002 Pathogen induced ... 40 0.29
gb|BE366907.1|BE366907 PI1_41_A10.g2_A002 Pathogen induced ... 40 0.29
gb|BG048238.1|BG048238 OV1_15_F07.g1_A002 Ovary 1 (OV1) Sor... 40 0.29
gb|BG158169.1|BG158169 EM1_10_C04.g1_A002 Embryo 1 (EM1) So... 40 0.29
gb|BG410878.1|BG410878 EM1_27_A09.g1_A002 Embryo 1 (EM1) So... 40 0.29
gb|BG463813.1|BG463813 EM1_51_C01.g1_A002 Embryo 1 (EM1) So... 40 0.29
gb|BG464509.1|BG464509 EM1_70_F05.g1_A002 Embryo 1 (EM1) So... 40 0.29
gb|BG556677.1|BG556677 EM1_40_B12.g1_A002 Embryo 1 (EM1) So... 40 0.29
gb|CF433458.1|CF433458 NIT1_27_D06.b1_A002 Nitrogen-deficie... 40 0.29
gb|CX623177.1|CX623177 GABR1_68_D12.b1_A002 GA- or brassino... 40 0.29
>gb|CX609976.1|CX609976 ANR1_15_H06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_15_H06_A002 5', mRNA sequence
Length = 677
Score = 563 bits (284), Expect = e-159
Identities = 459/518 (88%), Gaps = 15/518 (2%)
Strand = Plus / Plus
Query: 100 acagcaatggccgtgcgcgccatccata---cgccgctcctcctgtgcaccatgg---tg 153
||||||||||| ||||||||||| || | ||||||| ||||| |||||| ||| ||
Sbjct: 99 acagcaatggcggtgcgcgccattcacacgccgccgctgctcctctgcaccgtggcgttg 158
Query: 154 gtggtgctgac---cggcctcgtgtccccgtccaccgccgggctcagcctggacacggtg 210
|| ||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct: 159 ctgctgctgaccggcggcctcgtgtcgccgtccaccgccgagctcagcctcgacacggtg 218
Query: 211 agggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgagagggccaag 270
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 219 agggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgagaggaccaag 278
Query: 271 tacccgctcaaccggccggcctacgaccccctccactccgccgccggc------cgccgc 324
|||||||||||||||||||||||||| |||||||||| || || |||| | ||||
Sbjct: 279 tacccgctcaaccggccggcctacgagcccctccacttcggcgacggcgccgcgcaccgc 338
Query: 325 ctcaacgcctctttcgtcgagctcttcatccgcgagtccgaggccgttcagtccaaggcc 384
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctcaacgcctctttcgccgagctcttcatccgcgagtccgaggccgttcagtccaaggcc 398
Query: 385 ggaaggtaccaaagcctacaggagattccattcttcgcttacagagttccttctgctctg 444
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 399 ggaaggtaccaaagcctacaggagattccattcttcgcttacagagttcctttcactctg 458
Query: 445 gcgcctccatacaacttcacaagcgatctgtatcccgctgccnnntcagtcaacgttaac 504
|| ||||||||| |||||||||| |||||||||||||||||| | | | ||||||||
Sbjct: 459 gcacctccatacgacttcacaagagatctgtatcccgctgccgcattacttaacgttaat 518
Query: 505 gacgccatatggagcatgtacttcgacgagctgctccctcggctnnctaagnatggcgat 564
|||||||||||||||||||||||| | ||||||||||||| ||| | ||| | || |||
Sbjct: 519 gacgccatatggagcatgtacttcaatgagctgctccctctgctggccaagaacggtgat 578
Query: 565 gatggcaactacgccgtagctnttgatgcagatcttgc 602
||||||||||| |||||| || |||||||| |||||||
Sbjct: 579 gatggcaactatgccgtaactgttgatgcaaatcttgc 616
>gb|CX609893.1|CX609893 ANR1_15_H06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_15_H06_A002 3', mRNA sequence
Length = 719
Score = 343 bits (173), Expect = 1e-092
Identities = 241/266 (90%)
Strand = Plus / Plus
Query: 337 ttcgtcgagctcttcatccgcgagtccgaggccgttcagtccaaggccggaaggtaccaa 396
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcgccgagctcttcatccgcgagtccgaggccgttcagtccaaggccggaaggtaccaa 60
Query: 397 agcctacaggagattccattcttcgcttacagagttccttctgctctggcgcctccatac 456
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 61 agcctacaggagattccattcttcgcttacagagttcctttcactctggcacctccatac 120
Query: 457 aacttcacaagcgatctgtatcccgctgccnnntcagtcaacgttaacgacgccatatgg 516
||||||||||| |||||||||||||||||| | | | |||||||| ||||||||||||
Sbjct: 121 aacttcacaagagatctgtatcccgctgccgcattacttaacgttaatgacgccatatgg 180
Query: 517 agcatgtacttcgacgagctgctccctcggctnnctaagnatggcgatgatggcaactac 576
|||||||||||| | ||||||||||||| ||| | ||| | || ||||||||||||||
Sbjct: 181 agcatgtacttcaatgagctgctccctctgctggccaagaacggtgatgatggcaactat 240
Query: 577 gccgtagctnttgatgcagatcttgc 602
|||||| || ||||||||||||||||
Sbjct: 241 gccgtaactgttgatgcagatcttgc 266
>gb|CW226021.1|CW226021 104_663_11204668_116_37214_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204668, DNA
sequence
Length = 654
Score = 319 bits (161), Expect = 2e-085
Identities = 265/298 (88%), Gaps = 15/298 (5%)
Strand = Plus / Minus
Query: 100 acagcaatggccgtgcgcgccatccata---cgccgctcctcctgtgcaccatgg---tg 153
||||||||||| ||||||||||| || | ||||||| ||||| |||||| ||| ||
Sbjct: 310 acagcaatggcggtgcgcgccattcacacgccgccgctgctcctctgcaccgtggcgttg 251
Query: 154 gtggtgctgac---cggcctcgtgtccccgtccaccgccgggctcagcctggacacggtg 210
|| ||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct: 250 ctgctgctgaccggcggcctcgtgtcgccgtccaccgccgagctcagcctcgacacggtg 191
Query: 211 agggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgagagggccaag 270
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 190 agggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgagaggaccaag 131
Query: 271 tacccgctcaaccggccggcctacgaccccctccactccgccgccggc------cgccgc 324
|||||||||||||||||||||||||| |||||||||| || || |||| | ||||
Sbjct: 130 tacccgctcaaccggccggcctacgagcccctccacttcggcgacggcgccgcgcaccgc 71
Query: 325 ctcaacgcctctttcgtcgagctcttcatccgcgagtccgaggccgttcagtccaagg 382
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ctcaacgcctctttcgccgagctcttcatccgcgagtccgaggccgttcagtccaagg 13
>gb|CW303280.1|CW303280 104_787_11465156_116_35675_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465156, DNA
sequence
Length = 604
Score = 319 bits (161), Expect = 2e-085
Identities = 265/298 (88%), Gaps = 15/298 (5%)
Strand = Plus / Minus
Query: 100 acagcaatggccgtgcgcgccatccata---cgccgctcctcctgtgcaccatgg---tg 153
||||||||||| ||||||||||| || | ||||||| ||||| |||||| ||| ||
Sbjct: 593 acagcaatggcggtgcgcgccattcacacgccgccgctgctcctctgcaccgtggcgttg 534
Query: 154 gtggtgctgac---cggcctcgtgtccccgtccaccgccgggctcagcctggacacggtg 210
|| ||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct: 533 ctgctgctgaccggcggcctcgtgtcgccgtccaccgccgagctcagcctcgacacggtg 474
Query: 211 agggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgagagggccaag 270
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 473 agggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgagaggaccaag 414
Query: 271 tacccgctcaaccggccggcctacgaccccctccactccgccgccggc------cgccgc 324
|||||||||||||||||||||||||| |||||||||| || || |||| | ||||
Sbjct: 413 tacccgctcaaccggccggcctacgagcccctccacttcggcgacggcgccgcgcaccgc 354
Query: 325 ctcaacgcctctttcgtcgagctcttcatccgcgagtccgaggccgttcagtccaagg 382
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ctcaacgcctctttcgccgagctcttcatccgcgagtccgaggccgttcagtccaagg 296
>gb|CW313609.1|CW313609 104_803_11471374_148_35791_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471374, DNA
sequence
Length = 630
Score = 319 bits (161), Expect = 2e-085
Identities = 265/298 (88%), Gaps = 15/298 (5%)
Strand = Plus / Plus
Query: 100 acagcaatggccgtgcgcgccatccata---cgccgctcctcctgtgcaccatgg---tg 153
||||||||||| ||||||||||| || | ||||||| ||||| |||||| ||| ||
Sbjct: 30 acagcaatggcggtgcgcgccattcacacgccgccgctgctcctctgcaccgtggcgttg 89
Query: 154 gtggtgctgac---cggcctcgtgtccccgtccaccgccgggctcagcctggacacggtg 210
|| ||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct: 90 ctgctgctgaccggcggcctcgtgtcgccgtccaccgccgagctcagcctcgacacggtg 149
Query: 211 agggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgagagggccaag 270
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 150 agggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgagaggaccaag 209
Query: 271 tacccgctcaaccggccggcctacgaccccctccactccgccgccggc------cgccgc 324
|||||||||||||||||||||||||| |||||||||| || || |||| | ||||
Sbjct: 210 tacccgctcaaccggccggcctacgagcccctccacttcggcgacggcgccgcgcaccgc 269
Query: 325 ctcaacgcctctttcgtcgagctcttcatccgcgagtccgaggccgttcagtccaagg 382
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctcaacgcctctttcgccgagctcttcatccgcgagtccgaggccgttcagtccaagg 327
>gb|CW492422.1|CW492422 fsbb001f282l05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f282l05, DNA
sequence
Length = 703
Score = 319 bits (161), Expect = 2e-085
Identities = 208/224 (92%), Gaps = 6/224 (2%)
Strand = Plus / Plus
Query: 165 cggcctcgtgtccccgtccaccgccgggctcagcctggacacggtgagggacttcctgac 224
|||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 49 cggcctcgtgtcgccgtccaccgccgagctcagcctcgacacggtgagggacttcctgac 108
Query: 225 gcgggaggaggacaccattgtgttcagcctcatcgagagggccaagtacccgctcaaccg 284
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 109 gcgggaggaggacaccattgtgttcagcctcatcgagaggaccaagtacccgctcaaccg 168
Query: 285 gccggcctacgaccccctccactccgccgccggc------cgccgcctcaacgcctcttt 338
|||||||||||| |||||||||| || || |||| | ||||||||||||||||||
Sbjct: 169 gccggcctacgagcccctccacttcggcgacggcgccgcgcaccgcctcaacgcctcttt 228
Query: 339 cgtcgagctcttcatccgcgagtccgaggccgttcagtccaagg 382
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cgccgagctcttcatccgcgagtccgaggccgttcagtccaagg 272
>gb|CN152138.1|CN152138 WOUND1_80_C01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_80_C01_A002 3', mRNA sequence
Length = 694
Score = 291 bits (147), Expect = 5e-077
Identities = 212/236 (89%)
Strand = Plus / Plus
Query: 367 gccgttcagtccaaggccggaaggtaccaaagcctacaggagattccattcttcgcttac 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccgttcagtccaaggccggaaggtaccaaagcctacaggagattccattcttcgcttac 60
Query: 427 agagttccttctgctctggcgcctccatacaacttcacaagcgatctgtatcccgctgcc 486
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 agagttcctttcactctggcacctccatacaacttcacaagagatctgtatcccgctgcc 120
Query: 487 nnntcagtcaacgttaacgacgccatatggagcatgtacttcgacgagctgctccctcgg 546
| | | |||||||| |||||||||||||||||||||||| | ||||||||||||| |
Sbjct: 121 gcattacttaacgttaatgacgccatatggagcatgtacttcaatgagctgctccctctg 180
Query: 547 ctnnctaagnatggcgatgatggcaactacgccgtagctnttgatgcagatcttgc 602
|| | ||| | || |||||||||||||| |||||| || ||||||||||||||||
Sbjct: 181 ctggccaagaacggtgatgatggcaactatgccgtaactgttgatgcagatcttgc 236
>gb|CW184184.1|CW184184 104_600_11165019_116_36685_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165019, DNA
sequence
Length = 724
Score = 274 bits (138), Expect = 1e-071
Identities = 262/299 (87%), Gaps = 17/299 (5%)
Strand = Plus / Plus
Query: 100 acagcaatggccgtgcgcgccatccata---cgccgctcctcctgtgcaccatgg---tg 153
||||||||||| ||||||||||| || | ||||||| ||||| |||||| ||| ||
Sbjct: 420 acagcaatggcggtgcgcgccattcacacgccgccgctgctcctctgcaccgtggcgttg 479
Query: 154 gtggtgctgac---cggcctcgtgtccccgtccaccgccgggctcagcctggacacggtg 210
|| ||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct: 480 ctgctgctgaccggcggcctcgtgtcgccgtccaccgccgagctcagcctcgacacggtg 539
Query: 211 agggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgagagggccaag 270
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 540 agggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgagaggaccaag 599
Query: 271 tacccgctcaaccggccggcctacgaccccctccactccgccgccggc------cgccgc 324
|||||||||||||||||||||||||| |||||||||| || || |||| | ||||
Sbjct: 600 tacccgctcaaccggccggcctacgagcccctccacttcggcgacggcgccgcgcaccgc 659
Query: 325 ctcaacgcctctttcgtcgagctcttcatccgcgagtccg-aggccgttcagtccaagg 382
|||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 660 ctcaacgcctcttttcgcgagctcttcatccgcgagtccgaaggccg-tcagtccaagg 717
>gb|CL166445.1|CL166445 104_362_10809380_114_31798_212 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809380, DNA
sequence
Length = 589
Score = 268 bits (135), Expect = 7e-070
Identities = 173/186 (93%), Gaps = 6/186 (3%)
Strand = Plus / Minus
Query: 203 acacggtgagggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgaga 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 acacggtgagggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgaga 530
Query: 263 gggccaagtacccgctcaaccggccggcctacgaccccctccactccgccgccggc---- 318
|| ||||||||||||||||||||||||||||||| |||||||||| || || ||||
Sbjct: 529 ggaccaagtacccgctcaaccggccggcctacgagcccctccacttcggcgacggcgccg 470
Query: 319 --cgccgcctcaacgcctctttcgtcgagctcttcatccgcgagtccgaggccgttcagt 376
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 469 cgcaccgcctcaacgcctctttcgccgagctcttcatccgcgagtccgaggccgttcagt 410
Query: 377 ccaagg 382
||||||
Sbjct: 409 ccaagg 404
>gb|CN152208.1|CN152208 WOUND1_80_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_80_C01_A002 5', mRNA sequence
Length = 495
Score = 264 bits (133), Expect = 1e-068
Identities = 244/276 (88%), Gaps = 15/276 (5%)
Strand = Plus / Plus
Query: 100 acagcaatggccgtgcgcgccatccata---cgccgctcctcctgtgcaccatgg---tg 153
||||||||||| ||||||||||| || | ||||||| ||||| |||||| ||| ||
Sbjct: 220 acagcaatggcggtgcgcgccattcacacgccgccgctgctcctctgcaccgtggcgttg 279
Query: 154 gtggtgctgac---cggcctcgtgtccccgtccaccgccgggctcagcctggacacggtg 210
|| ||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct: 280 ctgctgctgaccggcggcctcgtgtcgccgtccaccgccgagctcagcctcgacacggtg 339
Query: 211 agggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgagagggccaag 270
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 340 agggacttcctgacgcgggaggaggacaccattgtgttcagcctcatcgagaggaccaag 399
Query: 271 tacccgctcaaccggccggcctacgaccccctccactccgccg-ccg-gccg----ccgc 324
||||||||| |||||||||||||||| |||||||||| || || ||| |||| ||||
Sbjct: 400 tacccgctcgaccggccggcctacgagcccctccacttcggcgaccgcgccgcgcaccgc 459
Query: 325 ctcaacgcctctttcgtcgagctcttcatccgcgag 360
|||||||||||||||| |||||||||||||||||||
Sbjct: 460 ctcaacgcctctttcgccgagctcttcatccgcgag 495
>gb|CW309305.1|CW309305 104_798_11469125_116_36239_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469125, DNA
sequence
Length = 666
Score = 143 bits (72), Expect = 3e-032
Identities = 84/88 (95%)
Strand = Plus / Minus
Query: 380 aggccggaaggtaccaaagcctacaggagattccattcttcgcttacagagttccttctg 439
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aggccggaaggtaccaaagcctacaggagattccattcttcgcttacagagttcctttca 418
Query: 440 ctctggcgcctccatacaacttcacaag 467
||||||| ||||||||||||||||||||
Sbjct: 417 ctctggcacctccatacaacttcacaag 390
Score = 129 bits (65), Expect = 4e-028
Identities = 115/134 (85%)
Strand = Plus / Minus
Query: 469 gatctgtatcccgctgccnnntcagtcaacgttaacgacgccatatggagcatgtacttc 528
|||||||||||||||||| | | | |||||||| ||||||||||||||||||||||||
Sbjct: 279 gatctgtatcccgctgccgcattacttaacgttaatgacgccatatggagcatgtacttc 220
Query: 529 gacgagctgctccctcggctnnctaagnatggcgatgatggcaactacgccgtagctntt 588
| ||||||||||||| ||| | ||| | || |||||||||||||| |||||| || ||
Sbjct: 219 aatgagctgctccctctgctggccaagaacggtgatgatggcaactatgccgtaactgtt 160
Query: 589 gatgcagatcttgc 602
||||||||||||||
Sbjct: 159 gatgcagatcttgc 146
>gb|CW309306.1|CW309306 104_798_11469125_148_36240_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469125, DNA
sequence
Length = 706
Score = 143 bits (72), Expect = 3e-032
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 380 aggccggaaggtaccaaagcctacaggagattccattcttcgcttacagagttccttctg 439
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aggccggaaggtaccaaagcctacaggagattccattcttcgcttacagagttcctttca 579
Query: 440 ctctggcgcctccatacaacttcacaag 467
||||||| ||||||||||||||||||||
Sbjct: 580 ctctggcacctccatacaacttcacaag 607
>gb|CW184464.1|CW184464 104_600_11165164_148_36687_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165164, DNA
sequence
Length = 662
Score = 129 bits (65), Expect = 4e-028
Identities = 131/151 (86%), Gaps = 9/151 (5%)
Strand = Plus / Minus
Query: 100 acagcaatggccgtgcgcgccatccata---cgccgctcctcctgtgcaccatgg---tg 153
||||||||||| ||||||||||| || | ||||||| ||||| |||||| ||| ||
Sbjct: 151 acagcaatggcggtgcgcgccattcacacgccgccgctgctcctctgcaccgtggcgttg 92
Query: 154 gtggtgctgac---cggcctcgtgtccccgtccaccgccgggctcagcctggacacggtg 210
|| ||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct: 91 ctgctgctgaccggcggcctcgtgtcgccgtccaccgccgagctcagcctcgacacggtg 32
Query: 211 agggacttcctgacgcgggaggaggacacca 241
|||||||||||||||||||||||||||||||
Sbjct: 31 agggacttcctgacgcgggaggaggacacca 1
>gb|CW039482.1|CW039482 104_272_10505528_114_30389 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505528, DNA
sequence
Length = 599
Score = 127 bits (64), Expect = 2e-027
Identities = 130/150 (86%), Gaps = 9/150 (6%)
Strand = Plus / Minus
Query: 100 acagcaatggccgtgcgcgccatccata---cgccgctcctcctgtgcaccatgg---tg 153
||||||||||| ||||||||||| || | ||||||| ||||| |||||| ||| ||
Sbjct: 158 acagcaatggcggtgcgcgccattcacacgccgccgctgctcctctgcaccgtggcgttg 99
Query: 154 gtggtgctgac---cggcctcgtgtccccgtccaccgccgggctcagcctggacacggtg 210
|| ||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct: 98 ctgctgctgaccggcggcctcgtgtcgccgtccaccgccgagctcagcctcgacacggtg 39
Query: 211 agggacttcctgacgcgggaggaggacacc 240
||||||||||||||||||||||||||||||
Sbjct: 38 agggacttcctgacgcgggaggaggacacc 9
>gb|CW351309.1|CW351309 fsbb001f013a09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f013a09, DNA
sequence
Length = 601
Score = 117 bits (59), Expect = 2e-024
Identities = 94/106 (88%), Gaps = 6/106 (5%)
Strand = Plus / Plus
Query: 283 cggccggcctacgaccccctccactccgccgccggc------cgccgcctcaacgcctct 336
|||||||||||||| |||||||||| || || |||| | ||||||||||||||||
Sbjct: 1 cggccggcctacgagcccctccacttcggcgacggcgccgcgcaccgcctcaacgcctct 60
Query: 337 ttcgtcgagctcttcatccgcgagtccgaggccgttcagtccaagg 382
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcgccgagctcttcatccgcgagtccgaggccgttcagtccaagg 106
>gb|CW184185.1|CW184185 104_600_11165019_148_36686_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165019, DNA
sequence
Length = 651
Score = 79.8 bits (40), Expect = 3e-013
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 343 gagctcttcatccgcgagtccgaggccgttcagtccaagg 382
||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gagctcttcatccgcgagtccgaggccgttcagtccaagg 612
>gb|CW303281.1|CW303281 104_787_11465156_148_35671_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465156, DNA
sequence
Length = 565
Score = 44.1 bits (22), Expect = 0.019
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 100 acagcaatggccgtgcgcgccatccatacgccgc 133
||||||||||| ||||||||||| || |||||||
Sbjct: 520 acagcaatggcggtgcgcgccattcacacgccgc 553
>gb|BE593195.1|BE593195 WS1_98_F09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 262
Score = 42.1 bits (21), Expect = 0.074
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctca 328
|||||||||||||||||||||
Sbjct: 107 ccgccgccggccgccgcctca 127
>gb|CW053991.1|CW053991 104_294_10516280_114_30182 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516280, DNA
sequence
Length = 243
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 164 ccgccgccggccgccgcctc 183
>gb|CW177798.1|CW177798 104_591_11159221_116_36611_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159221, DNA
sequence
Length = 568
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 65 ccgccgccggccgccgcctc 46
>gb|AW680241.1|AW680241 WS1_50_E07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 306 ctccgccgccggccgccgcctcaa 329
||||| ||||||||||||||||||
Sbjct: 139 ctccggcgccggccgccgcctcaa 116
>gb|AW680559.1|AW680559 WS1_5_E11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 604
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 306 ctccgccgccggccgccgcctcaa 329
||||| ||||||||||||||||||
Sbjct: 165 ctccggcgccggccgccgcctcaa 142
>gb|AW924437.1|AW924437 WS1_69_A05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 228 ccgccgccggccgccgcctc 247
>gb|BE352974.1|BE352974 DG1_2_F12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 483
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 183 ccgccgccggccgccgcctc 202
>gb|BE360950.1|BE360950 DG1_68_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 512
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 243 ccgccgccggccgccgcctc 262
>gb|BE361973.1|BE361973 DG1_83_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 375 ccgccgccggccgccgcctc 394
>gb|BE363695.1|BE363695 WS1_69_A05.g2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 564
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 364 ccgccgccggccgccgcctc 383
>gb|BE366863.1|BE366863 PI1_41_A10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 234
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 92 ccgccgccggccgccgcctc 111
>gb|BE366907.1|BE366907 PI1_41_A10.g2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 389
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 326 ccgccgccggccgccgcctc 345
>gb|BG048238.1|BG048238 OV1_15_F07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 609
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 306 ctccgccgccggccgccgcctcaa 329
||||| ||||||||||||||||||
Sbjct: 256 ctccggcgccggccgccgcctcaa 233
>gb|BG158169.1|BG158169 EM1_10_C04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 348
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 208 ccgccgccggccgccgcctc 227
>gb|BG410878.1|BG410878 EM1_27_A09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 610
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 323 ccgccgccggccgccgcctc 342
>gb|BG463813.1|BG463813 EM1_51_C01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 213 ccgccgccggccgccgcctc 232
>gb|BG464509.1|BG464509 EM1_70_F05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 641
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 353 ccgccgccggccgccgcctc 372
>gb|BG556677.1|BG556677 EM1_40_B12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 377
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 248 ccgccgccggccgccgcctc 267
>gb|CF433458.1|CF433458 NIT1_27_D06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_27_D06_A002 3', mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 304 ccgccgccggccgccgcctc 323
>gb|CX623177.1|CX623177 GABR1_68_D12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_68_D12_A002 3', mRNA sequence
Length = 730
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 426 ccgccgccggccgccgcctc 445
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 207,049
Number of Sequences: 832831
Number of extensions: 207049
Number of successful extensions: 57419
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57346
Number of HSP's gapped (non-prelim): 69
length of query: 770
length of database: 491,359,669
effective HSP length: 20
effective length of query: 750
effective length of database: 474,703,049
effective search space: 356027286750
effective search space used: 356027286750
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)