BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS7b05.xg.2.1
(526 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL167975.1|CL167975 104_365_10810478_116_31805_158 Sorgh... 565 e-159
gb|CF429881.1|CF429881 PH1_25_C04.b1_A002 Phosphorous-defic... 545 e-153
gb|CL167974.1|CL167974 104_365_10810478_114_31804_158 Sorgh... 541 e-152
gb|CW031320.1|CW031320 104_259_10500738_116_30398 Sorghum m... 529 e-149
gb|CW315001.1|CW315001 104_805_11472128_148_35822_018 Sorgh... 529 e-149
gb|CF433456.1|CF433456 NIT1_27_E11.b1_A002 Nitrogen-deficie... 527 e-148
gb|CW235188.1|CW235188 104_690_11214849_116_37409_041 Sorgh... 511 e-143
gb|CW413531.1|CW413531 fsbb001f112l18f0 Sorghum methylation... 424 e-117
gb|BF420934.1|BF420934 FM1_5_B03.g1_A003 Floral-Induced Mer... 394 e-108
gb|BE357339.1|BE357339 DG1_148_D12.g1_A002 Dark Grown 1 (DG... 311 4e-083
gb|CW235189.1|CW235189 104_690_11214849_148_37413_041 Sorgh... 281 3e-074
gb|BI099525.1|BI099525 IP1_43_D01.g1_A002 Immature pannicle... 272 3e-071
gb|BG158738.1|BG158738 RHIZ2_44_F02.g1_A003 Rhizome2 (RHIZ2... 262 3e-068
gb|CW315000.1|CW315000 104_805_11472128_116_35818_018 Sorgh... 246 2e-063
gb|AW283377.1|AW283377 LG1_223_D12.g1_A002 Light Grown 1 (L... 234 7e-060
gb|BG947765.1|BG947765 IP1_8_G12.g1_A002 Immature pannicle ... 234 7e-060
gb|BI074550.1|BI074550 IP1_16_A11.g1_A002 Immature pannicle... 234 7e-060
gb|BG948058.1|BG948058 IP1_8_G12.b1_A002 Immature pannicle ... 232 3e-059
gb|CF072959.1|CF072959 FE1_27_D01.b1_A002 Iron-deficient se... 226 2e-057
gb|CX608205.1|CX608205 ANR1_37_F12.b1_A002 Anaerobic roots ... 190 9e-047
gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2... 165 5e-039
gb|CW315968.1|CW315968 104_807_11472644_116_35841_076 Sorgh... 163 2e-038
gb|BI074863.1|BI074863 IP1_16_A11.b1_A002 Immature pannicle... 149 3e-034
gb|AW282791.1|AW282791 LG1_290_D05.g1_A002 Light Grown 1 (L... 143 2e-032
gb|BF587843.1|BF587843 FM1_33_F03.g1_A003 Floral-Induced Me... 143 2e-032
gb|CW164547.1|CW164547 104_572_11152044_148_36463_038 Sorgh... 141 7e-032
gb|CN134554.1|CN134554 OX1_27_C06.b1_A002 Oxidatively-stres... 139 3e-031
gb|CW224629.1|CW224629 104_662_11203928_148_37201_032 Sorgh... 137 1e-030
gb|CN132882.1|CN132882 OX1_8_F12.g1_A002 Oxidatively-stress... 125 4e-027
gb|BG557221.1|BG557221 EM1_44_B10.g1_A002 Embryo 1 (EM1) So... 105 4e-021
gb|CF071834.1|CF071834 FE1_19_D03.b1_A002 Iron-deficient se... 105 4e-021
gb|CN127278.1|CN127278 RHOH1_22_C03.b1_A002 Acid- and alkal... 105 4e-021
gb|BG051983.1|BG051983 RHIZ2_7_D11.g1_A003 Rhizome2 (RHIZ2)... 103 2e-020
gb|BG241543.1|BG241543 RHIZ2_51_H04.g1_A003 Rhizome2 (RHIZ2... 101 6e-020
gb|BG103131.1|BG103131 RHIZ2_18_E07.g1_A003 Rhizome2 (RHIZ2... 98 1e-018
gb|BI245815.1|BI245815 IP1_64_G05.g1_A002 Immature pannicle... 98 1e-018
gb|CD219969.1|CD219969 CCC1_60_F06.b1_A007 Callus culture/c... 98 1e-018
gb|CD233339.1|CD233339 SS1_13_G11.b1_A012 Salt-stressed see... 98 1e-018
gb|CF771740.1|CF771740 DSBF1_23_E06.g1_A010 Drought-stresse... 98 1e-018
gb|BG239994.1|BG239994 OV1_31_F08.g1_A002 Ovary 1 (OV1) Sor... 92 6e-017
gb|CD227828.1|CD227828 CCC1_56_G02.b1_A007 Callus culture/c... 92 6e-017
gb|CX607839.1|CX607839 ANR1_31_C06.b1_A002 Anaerobic roots ... 92 6e-017
gb|CN128917.1|CN128917 RHOH1_32_H10.b1_A002 Acid- and alkal... 90 2e-016
gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorgh... 88 9e-016
gb|AW286294.1|AW286294 LG1_330_A01.g1_A002 Light Grown 1 (L... 88 9e-016
gb|BE598541.1|BE598541 PI1_83_C07.g1_A002 Pathogen induced ... 88 9e-016
gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-tre... 88 9e-016
gb|BG241497.1|BG241497 RHIZ2_50_A08.g1_A003 Rhizome2 (RHIZ2... 86 4e-015
gb|CL148486.1|CL148486 104_328_10593130_148_31782_254 Sorgh... 84 1e-014
gb|CW385345.1|CW385345 fsbb001f068m13k0 Sorghum methylation... 84 1e-014
gb|BE918570.1|BE918570 OV1_8_E09.b1_A002 Ovary 1 (OV1) Sorg... 84 1e-014
gb|BF317903.1|BF317903 OV1_9_B10.b1_A002 Ovary 1 (OV1) Sorg... 84 1e-014
gb|BF585666.1|BF585666 FM1_24_B07.g1_A003 Floral-Induced Me... 84 1e-014
gb|BI074880.1|BI074880 IP1_17_A09.g1_A002 Immature pannicle... 82 6e-014
gb|CN128754.1|CN128754 RHOH1_31_H09.b1_A002 Acid- and alkal... 82 6e-014
gb|CD211868.1|CD211868 HS1_67_A05.b1_A012 Heat-shocked seed... 80 2e-013
gb|BF655935.1|BF655935 FM1_42_G12.g1_A003 Floral-Induced Me... 78 9e-013
gb|CL148485.1|CL148485 104_328_10593130_116_31783_254 Sorgh... 76 4e-012
gb|CF433645.1|CF433645 NIT1_28_F11.b1_A002 Nitrogen-deficie... 76 4e-012
gb|CF072057.1|CF072057 FE1_20_C10.b1_A002 Iron-deficient se... 72 6e-011
gb|BG240580.1|BG240580 OV1_31_F08.b1_A002 Ovary 1 (OV1) Sor... 68 9e-010
gb|BE126049.1|BE126049 DG1_65_G07.b1_A002 Dark Grown 1 (DG1... 66 3e-009
gb|CL157591.1|CL157591 104_345_10783695_114_31477_255 Sorgh... 64 1e-008
gb|CL157592.1|CL157592 104_345_10783695_116_31478_255 Sorgh... 64 1e-008
gb|CL197184.1|CL197184 104_424_10943572_114_32383_016 Sorgh... 64 1e-008
gb|CW082277.1|CW082277 104_424_10943572_114_32334_016 Sorgh... 64 1e-008
gb|CW481819.1|CW481819 fsbb001f241j14k0 Sorghum methylation... 64 1e-008
gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Me... 62 5e-008
gb|BF481250.1|BF481250 FM1_17_E01.b1_A003 Floral-Induced Me... 62 5e-008
gb|BI140990.1|BI140990 IP1_41_G10.b1_A002 Immature pannicle... 62 5e-008
gb|CL192144.1|CL192144 104_414_10940036_114_32246_068 Sorgh... 58 8e-007
gb|BE917989.1|BE917989 OV1_8_E09.g1_A002 Ovary 1 (OV1) Sorg... 56 3e-006
gb|BF317768.1|BF317768 OV1_9_B10.g1_A002 Ovary 1 (OV1) Sorg... 54 1e-005
gb|BE355115.1|BE355115 DG1_113_C09.g1_A002 Dark Grown 1 (DG... 48 8e-004
gb|CD227257.1|CD227257 CCC1_50_D12.b1_A007 Callus culture/c... 48 8e-004
gb|BE918278.1|BE918278 OV1_1_D06.g1_A002 Ovary 1 (OV1) Sorg... 44 0.013
gb|BF585894.1|BF585894 FM1_25_H01.g1_A003 Floral-Induced Me... 44 0.013
gb|BG050513.1|BG050513 FM1_70_D01.g1_A003 Floral-Induced Me... 44 0.013
gb|BG103164.1|BG103164 RHIZ2_18_H12.g1_A003 Rhizome2 (RHIZ2... 44 0.013
gb|CF072531.1|CF072531 FE1_3_B12.b1_A002 Iron-deficient see... 44 0.013
gb|CF073760.1|CF073760 FE1_12_E05.b1_A002 Iron-deficient se... 44 0.013
gb|CF430024.1|CF430024 PH1_25_C04.g1_A002 Phosphorous-defic... 44 0.013
gb|CW315969.1|CW315969 104_807_11472644_148_35845_076 Sorgh... 42 0.050
gb|CD213045.1|CD213045 HS1_28_B08.b1_A012 Heat-shocked seed... 42 0.050
gb|CW039030.1|CW039030 104_271_10505258_114_30387 Sorghum m... 40 0.20
gb|CW060631.1|CW060631 104_304_10519959_114_30143 Sorghum m... 40 0.20
gb|CW066446.1|CW066446 104_313_10523692_115_30149 Sorghum m... 40 0.20
gb|CW255787.1|CW255787 104_720_11226426_148_35137_071 Sorgh... 40 0.20
gb|AW282801.1|AW282801 LG1_290_C06.g1_A002 Light Grown 1 (L... 40 0.20
gb|BE918322.1|BE918322 OV1_2_A10.g1_A002 Ovary 1 (OV1) Sorg... 40 0.20
gb|BG050984.1|BG050984 FM1_55_A02.b1_A003 Floral-Induced Me... 40 0.20
gb|BG051682.1|BG051682 FM1_60_A04.g1_A003 Floral-Induced Me... 40 0.20
>gb|CL167975.1|CL167975 104_365_10810478_116_31805_158 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810478, DNA
sequence
Length = 638
Score = 565 bits (285), Expect = e-159
Identities = 447/495 (90%), Gaps = 22/495 (4%)
Strand = Plus / Plus
Query: 40 cacggatatcatttgctatttaacattgattcaaaccttgtcctttgttcaattcctcgt 99
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 155 cacgaatatcatttgccatttaacatc----caaaccttgtcctttgttcaattcctcgt 210
Query: 100 ccggccgacaattctgggtccaagaacat---tacacaaaacgtagcatatgagctccaa 156
||| |||||||||||||| |||| || |||||||||| || |||| |||| |||
Sbjct: 211 ccg----acaattctgggtcccagaatatgtttacacaaaacataacata--agcttcaa 264
Query: 157 aacatga----caacacaaaatttctaaactgttgttt-ctccctatgcacaagctctag 211
||||| | ||| |||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct: 265 aacatcatcaacaatacaaaatttctaaattgttgttttctccctatgcacaagctccag 324
Query: 212 aacttttttgaaccgtgatagg---cagctcagcagttgatgccacactgcctgacgtcg 268
| ||||||||| | | ||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 ga-ttttttgaatcttaataataaacagctcagcagttgatgccacactgcctgacgtcc 383
Query: 269 ggccccttggtcctgacgatgaagggatcgatcctgacccagagcagggagaagatggag 328
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 gggccctttgtcctgacgatgaaggggtcgatcctgacccagagcagggagaagatggag 443
Query: 329 gccagcagcacggaccagatgacgacaatggtgggcgtccggttctggcgccccatgagc 388
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 444 gccagcagcacggaccagatgacaacaatggtgggcgtcctgttctggcgccccatgagc 503
Query: 389 cccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagcttgccgaag 448
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 504 cccttgaggaacgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaag 563
Query: 449 agcgggccccacgactggtacccgttgttgatggcgtcggagatgccggccacgacgccg 508
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcgggccccatgactggtacccgttgttgatggcgtcggagatgccggccacgacgccg 623
Query: 509 atgatgttgatgatg 523
|||||||||||||||
Sbjct: 624 atgatgttgatgatg 638
>gb|CF429881.1|CF429881 PH1_25_C04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_C04_A002 3', mRNA sequence
Length = 553
Score = 545 bits (275), Expect = e-153
Identities = 421/464 (90%), Gaps = 18/464 (3%)
Strand = Plus / Minus
Query: 71 caaaccttgtcctttgttcaattcctcgtccggccgacaattctgggtccaagaacat-- 128
|||||||||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct: 547 caaaccttgtcctttgttcaattcctcgtccg----acaattctgggtcccagaatatgt 492
Query: 129 -tacacaaaacgtagcatatgagctccaaaacatga----caacacaaaatttctaaact 183
|||||||||| || |||| |||| |||||||| | ||| |||||||||||||| |
Sbjct: 491 ttacacaaaacataacata--agcttcaaaacatcatcaacaatacaaaatttctaaatt 434
Query: 184 gttgttt-ctccctatgcacaagctctagaacttttttgaaccgtgatagg---cagctc 239
||||||| |||||||||||||||||| || | ||||||||| | | ||| ||||||
Sbjct: 433 gttgttttctccctatgcacaagctccagga-ttttttgaatcttaataataaacagctc 375
Query: 240 agcagttgatgccacactgcctgacgtcgggccccttggtcctgacgatgaagggatcga 299
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 374 agcagttgatgccacactgcctgacgtccgggccctttgtcctgacgatgaaggggtcga 315
Query: 300 tcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatgg 359
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 314 tcctgacccagagcagggagaagatggaggccagcagcacggaccagaagacaacaatgg 255
Query: 360 tgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatga 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgggcgtcctgttctggcgccccatgagccccttgaggaacgggtagaggtggacgatga 195
Query: 420 cccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttga 479
||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 194 cccagaatgcgaagaagagcttgccgaagagcgggccccatgactggtacacgttgttga 135
Query: 480 tggcgtcggagatgccggccacgacgccgatgatgttgatgatg 523
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tggcgtcggagatgccggccacgacgccgatgatgttgatgatg 91
>gb|CL167974.1|CL167974 104_365_10810478_114_31804_158 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810478, DNA
sequence
Length = 777
Score = 541 bits (273), Expect = e-152
Identities = 413/454 (90%), Gaps = 18/454 (3%)
Strand = Plus / Minus
Query: 81 cctttgttcaattcctcgtccggccgacaattctgggtccaagaacat---tacacaaaa 137
|||||||||||||||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 777 cctttgttcaattcctcgtccg----acaattctgggtcccagaatatgtttacacaaaa 722
Query: 138 cgtagcatatgagctccaaaacatga----caacacaaaatttctaaactgttgttt-ct 192
| || |||| |||| |||||||| | ||| |||||||||||||| |||||||| ||
Sbjct: 721 cataacata--agcttcaaaacatcatcaacaatacaaaatttctaaattgttgttttct 664
Query: 193 ccctatgcacaagctctagaacttttttgaaccgtgatagg---cagctcagcagttgat 249
|||||||||||||||| || | ||||||||| | | ||| ||||||||||||||||
Sbjct: 663 ccctatgcacaagctccagga-ttttttgaatcttaataataaacagctcagcagttgat 605
Query: 250 gccacactgcctgacgtcgggccccttggtcctgacgatgaagggatcgatcctgaccca 309
|||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 604 gccacactgcctgacgtccgggccctttgtcctgacgatgaaggggtcgatcctgaccca 545
Query: 310 gagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggcgtccg 369
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 544 gagcagggagaagatggaggccagcagcacggaccagatgacaacaatggtgggcgtcct 485
Query: 370 gttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 484 gttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaatgc 425
Query: 430 gaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcgga 489
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 424 gaagaagagcttgccgaagagcgggccccatgactggtacccgttgttgatggcgtcgga 365
Query: 490 gatgccggccacgacgccgatgatgttgatgatg 523
||||||||||||||||||||||||||||||||||
Sbjct: 364 gatgccggccacgacgccgatgatgttgatgatg 331
>gb|CW031320.1|CW031320 104_259_10500738_116_30398 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500738, DNA
sequence
Length = 854
Score = 529 bits (267), Expect = e-149
Identities = 343/365 (93%), Gaps = 5/365 (1%)
Strand = Plus / Plus
Query: 163 acaacacaaaatttctaaactgttgttt-ctccctatgcacaagctctagaacttttttg 221
|||| |||||||||||||| |||||||| |||||||||||||||||| || | |||||||
Sbjct: 43 acaatacaaaatttctaaattgttgttttctccctatgcacaagctccagga-ttttttg 101
Query: 222 aaccgtgatagg---cagctcagcagttgatgccacactgcctgacgtcgggccccttgg 278
|| | | ||| |||||||||||||||||||||||||||||||||| || ||||| |
Sbjct: 102 aatcttaataataaacagctcagcagttgatgccacactgcctgacgtccgggccctttg 161
Query: 279 tcctgacgatgaagggatcgatcctgacccagagcagggagaagatggaggccagcagca 338
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tcctgacgatgaaggggtcgatcctgacccagagcagggagaagatggaggccagcagca 221
Query: 339 cggaccagatgacgacaatggtgggcgtccggttctggcgccccatgagccccttgagga 398
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 222 cggaccagatgacaacaatggtgggcgtcctgttctggcgccccatgagccccttgagga 281
Query: 399 acgggtagaggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggcccc 458
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 282 acgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaagagcgggcccc 341
Query: 459 acgactggtacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttga 518
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atgactggtacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttga 401
Query: 519 tgatg 523
|||||
Sbjct: 402 tgatg 406
>gb|CW315001.1|CW315001 104_805_11472128_148_35822_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472128, DNA
sequence
Length = 685
Score = 529 bits (267), Expect = e-149
Identities = 343/365 (93%), Gaps = 5/365 (1%)
Strand = Plus / Minus
Query: 163 acaacacaaaatttctaaactgttgttt-ctccctatgcacaagctctagaacttttttg 221
|||| |||||||||||||| |||||||| |||||||||||||||||| || | |||||||
Sbjct: 654 acaatacaaaatttctaaattgttgttttctccctatgcacaagctccagga-ttttttg 596
Query: 222 aaccgtgatagg---cagctcagcagttgatgccacactgcctgacgtcgggccccttgg 278
|| | | ||| |||||||||||||||||||||||||||||||||| || ||||| |
Sbjct: 595 aatcttaataataaacagctcagcagttgatgccacactgcctgacgtccgggccctttg 536
Query: 279 tcctgacgatgaagggatcgatcctgacccagagcagggagaagatggaggccagcagca 338
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcctgacgatgaaggggtcgatcctgacccagagcagggagaagatggaggccagcagca 476
Query: 339 cggaccagatgacgacaatggtgggcgtccggttctggcgccccatgagccccttgagga 398
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 475 cggaccagatgacaacaatggtgggcgtcctgttctggcgccccatgagccccttgagga 416
Query: 399 acgggtagaggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggcccc 458
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 415 acgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaagagcgggcccc 356
Query: 459 acgactggtacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttga 518
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atgactggtacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttga 296
Query: 519 tgatg 523
|||||
Sbjct: 295 tgatg 291
>gb|CF433456.1|CF433456 NIT1_27_E11.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_27_E11_A002 3', mRNA sequence
Length = 553
Score = 527 bits (266), Expect = e-148
Identities = 428/476 (89%), Gaps = 22/476 (4%)
Strand = Plus / Minus
Query: 40 cacggatatcatttgctatttaacattgattcaaaccttgtcctttgttcaattcctcgt 99
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 465 cacgaatatcatttgccatttaacatc----caaaccttgtcctttgttcaattcctcgt 410
Query: 100 ccggccgacaattctgggtccaagaacat---tacacaaaacgtagcatatgagctccaa 156
||| |||||||||||||| |||| || |||||||||| || |||| |||| |||
Sbjct: 409 ccg----acaattctgggtcccagaatatgtttacacaaaacataacata--agcttcaa 356
Query: 157 aacatga----caacacaaaatttctaaactgttgttt-ctccctatgcacaagctctag 211
||||| | ||| |||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct: 355 aacatcatcaacaatacaaaatttctaaattgttgttttctccctatgcacaagctccag 296
Query: 212 aacttttttgaaccgtgatagg---cagctcagcagttgatgccacactgcctgacgtcg 268
| ||||||||| | | ||| ||||||||||||||||||||||||||||||||||
Sbjct: 295 ga-ttttttgaatcttaataataaacagctcagcagttgatgccacactgcctgacgtcc 237
Query: 269 ggccccttggtcctgacgatgaagggatcgatcctgacccagagcagggagaagatggag 328
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 236 gggccctttgtcctgacgatgaaggggtcgatcctgacccagagcagggagaagatggag 177
Query: 329 gccagcagcacggaccagatgacgacaatggtgggcgtccggttctggcgccccatgagc 388
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 176 gccagcagcacggaccagatgacaacaatggtgggcgtcctgttctggcgccccatgagc 117
Query: 389 cccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagcttgccgaag 448
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 116 cccttgaggaacgggtagaggtggacgatgacccagaatgcgaagaagagcttgccgaag 57
Query: 449 agcgggccccacgactggtacccgttgttgatggcgtcggagatgccggccacgac 504
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 agcgggccccatgactggtacccgttgttgatggcgtcggagatgccggccacgac 1
>gb|CW235188.1|CW235188 104_690_11214849_116_37409_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214849, DNA
sequence
Length = 601
Score = 511 bits (258), Expect = e-143
Identities = 282/290 (97%)
Strand = Plus / Plus
Query: 234 cagctcagcagttgatgccacactgcctgacgtcgggccccttggtcctgacgatgaagg 293
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct: 36 cagctcagcagttgatgccacactgcctgacgtccgggccctttgtcctgacgatgaagg 95
Query: 294 gatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacga 353
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 96 ggtcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacaa 155
Query: 354 caatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgga 413
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 caatggtgggcgtcctgttctggcgccccatgagccccttgaggaacgggtagaggtgga 215
Query: 414 cgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgt 473
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 216 cgatgacccagaatgcgaagaagagcttgccgaagagcgggccccatgactggtacccgt 275
Query: 474 tgttgatggcgtcggagatgccggccacgacgccgatgatgttgatgatg 523
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgttgatggcgtcggagatgccggccacgacgccgatgatgttgatgatg 325
>gb|CW413531.1|CW413531 fsbb001f112l18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f112l18, DNA
sequence
Length = 427
Score = 424 bits (214), Expect = e-117
Identities = 229/234 (97%)
Strand = Plus / Minus
Query: 290 aagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatg 349
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaggggtcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatg 368
Query: 350 acgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagagg 409
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acaacaatggtgggcgtcctgttctggcgccccatgagccccttgaggaacgggtagagg 308
Query: 410 tggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtac 469
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 307 tggacgatgacccagaatgcgaagaagagcttgccgaagagcgggccccatgactggtac 248
Query: 470 ccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttgatgatg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttgatgatg 194
>gb|BF420934.1|BF420934 FM1_5_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 259
Score = 394 bits (199), Expect = e-108
Identities = 238/251 (94%)
Strand = Plus / Minus
Query: 245 ttgatgccacactgcctgacgtcgggccccttggtcctgacgatgaagggatcgatcctg 304
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct: 251 ttgatgccacactgcctgacgtccgggccctttgtcctgacgatgaaggggtcgatcctg 192
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 191 acccagagcagggagaagatggaggccagcagcacggaccagatgacaacaatggtgggc 132
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gtcctgttctgccggcccatgagccccttgaggaacgggtagaggtggacgatgacccag 72
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
|| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 71 aatgcgaagaagagcttgccgaagaggggtccccatgactggtacccgttgttgatggcg 12
Query: 485 tcggagatgcc 495
| |||||||||
Sbjct: 11 tgggagatgcc 1
>gb|BE357339.1|BE357339 DG1_148_D12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 505
Score = 311 bits (157), Expect = 4e-083
Identities = 172/177 (97%)
Strand = Plus / Minus
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgacaacaatggtgggcgtcctgttctggcgccccatgagccccttgaggaacgggtag 446
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 aggtggacgatgacccataatgcgaagaagagcttgccgaagagcgggccccatgactgg 386
Query: 467 tacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttgatgatg 523
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttgatgatg 329
>gb|CW235189.1|CW235189 104_690_11214849_148_37413_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214849, DNA
sequence
Length = 686
Score = 281 bits (142), Expect = 3e-074
Identities = 148/150 (98%)
Strand = Plus / Minus
Query: 374 tggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaag 433
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 686 tggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaatgcgaag 627
Query: 434 aagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagatg 493
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 626 aagagcttgccgaagagcgggccccatgactggtacccgttgttgatggcgtcggagatg 567
Query: 494 ccggccacgacgccgatgatgttgatgatg 523
||||||||||||||||||||||||||||||
Sbjct: 566 ccggccacgacgccgatgatgttgatgatg 537
>gb|BI099525.1|BI099525 IP1_43_D01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 203
Score = 272 bits (137), Expect = 3e-071
Identities = 176/185 (95%), Gaps = 3/185 (1%)
Strand = Plus / Minus
Query: 233 gcagctcagcag-ttgatgccaca-ctgcctgacgtcgggcccct-tggtcctgacgatg 289
|||||||||||| ||||||||||| |||||||||||| || |||| | ||||||||||||
Sbjct: 185 gcagctcagcagnttgatgccacanctgcctgacgtccgggccctattgtcctgacgatg 126
Query: 290 aagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatg 349
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aaggggtcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatg 66
Query: 350 acgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagagg 409
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acaacaatggtgggcgtcctgttctggcgccccatgagccccttgaggaacgggtagagg 6
Query: 410 tggac 414
|||||
Sbjct: 5 tggac 1
>gb|BG158738.1|BG158738 RHIZ2_44_F02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 316
Score = 262 bits (132), Expect = 3e-068
Identities = 220/246 (89%), Gaps = 5/246 (2%)
Strand = Plus / Minus
Query: 163 acaacacaaaatttctaaactgttgtttc-tccctatgcacaagctctagaacttttttg 221
|||| |||||||||||||| ||||||||| | ||||||||||||||| || | |||||||
Sbjct: 245 acaatacaaaatttctaaattgttgtttccttcctatgcacaagctccagga-ttttttg 187
Query: 222 aaccgtgatagg---cagctcagcagttgatgccacactgcctgacgtcgggccccttgg 278
|| | | ||| ||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct: 186 aatcttaataataaacagctcaccagttgatgccacactgcctgacgtccgggccctttg 127
Query: 279 tcctgacgatgaagggatcgatcctgacccagagcagggagaagatggaggccagcagca 338
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 126 tcctgacgatgaaggggtcgatcctgacccagagcacggagaagatggaggccagcagca 67
Query: 339 cggaccagatgacgacaatggtgggcgtccggttctggcgccccatgagccccttgagga 398
||||||| ||||| |||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 66 cggaccaaatgacaacaatggtgggcgtcctgttctgccggcccatgagccccttgagga 7
Query: 399 acgggt 404
||||||
Sbjct: 6 acgggt 1
>gb|CW315000.1|CW315000 104_805_11472128_116_35818_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472128, DNA
sequence
Length = 651
Score = 246 bits (124), Expect = 2e-063
Identities = 274/318 (86%), Gaps = 22/318 (6%)
Strand = Plus / Plus
Query: 40 cacggatatcatttgctatttaacattgattcaaaccttgtcctttgttcaattcctcgt 99
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 345 cacgaatatcatttgccatttaacatc----caaaccttgtcctttgttcaattcctcgt 400
Query: 100 ccggccgacaattctgggtccaagaacat---tacacaaaacgtagcatatgagctccaa 156
||| |||||||||||||| |||| || |||||||||| || |||| |||| |||
Sbjct: 401 ccg----acaattctgggtcccagaatatgtttacacaaaacataacata--agcttcaa 454
Query: 157 aacatga----caacacaaaatttctaaactgttgttt-ctccctatgcacaagctctag 211
||||| | ||| |||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct: 455 aacatcatcaacaatacaaaatttctaaattgttgttttctccctatgcacaagctccag 514
Query: 212 aacttttttgaaccgtgatagg---cagctcagcagttgatgccacactgcctgacgtcg 268
| ||||||||| | | ||| ||||||||||||||||||||||||||||||||||
Sbjct: 515 ga-ttttttgaatcttaataataaacagctcagcagttgatgccacactgcctgacgtcc 573
Query: 269 ggccccttggtcctgacgatgaagggatcgatcctgacccagagcagggagaagatggag 328
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 574 gggccctttgtcctgacgatgaaggggtcgatcctgacccagagcagggagaagatggag 633
Query: 329 gccagcagcacggaccag 346
||||||||||||||||||
Sbjct: 634 gccagcagcacggaccag 651
>gb|AW283377.1|AW283377 LG1_223_D12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 234 bits (118), Expect = 7e-060
Identities = 208/238 (87%)
Strand = Plus / Minus
Query: 286 gatgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggacca 345
||||||||| |||||||||||||||| || |||||||||||||| || || | ||||||
Sbjct: 305 gatgaaggggtcgatcctgacccagacgagcgagaagatggaggcgaggaggatggacca 246
Query: 346 gatgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggta 405
|| ||||| |||||||||||||||||||| | |||||| || |||||||||||||||||
Sbjct: 245 gagcacgacgatggtgggcgtccggttctgcctccccatcaggcccttgaggaacgggta 186
Query: 406 gaggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactg 465
|||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct: 185 caggtggacgatgacccagaaggagaagaagagcttgccgaacagcggcccccacgagcc 126
Query: 466 gtacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttgatgatg 523
|||||||||||||| ||||||||||| || ||||||| ||| | ||||||||||||
Sbjct: 125 gtacccgttgttgacggcgtcggagacccccgccacgatgcccaccatgttgatgatg 68
>gb|BG947765.1|BG947765 IP1_8_G12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 234 bits (118), Expect = 7e-060
Identities = 208/238 (87%)
Strand = Plus / Minus
Query: 286 gatgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggacca 345
||||||||| |||||||||||||||| || |||||||||||||| || || | ||||||
Sbjct: 320 gatgaaggggtcgatcctgacccagacgagcgagaagatggaggcgaggaggatggacca 261
Query: 346 gatgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggta 405
|| ||||| |||||||||||||||||||| | |||||| || |||||||||||||||||
Sbjct: 260 gagcacgacgatggtgggcgtccggttctgcctccccatcaggcccttgaggaacgggta 201
Query: 406 gaggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactg 465
|||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct: 200 caggtggacgatgacccagaaggagaagaagagcttgccgaacagcggcccccacgagcc 141
Query: 466 gtacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttgatgatg 523
|||||||||||||| ||||||||||| || ||||||| ||| | ||||||||||||
Sbjct: 140 gtacccgttgttgacggcgtcggagacccccgccacgatgcccaccatgttgatgatg 83
>gb|BI074550.1|BI074550 IP1_16_A11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 234 bits (118), Expect = 7e-060
Identities = 208/238 (87%)
Strand = Plus / Minus
Query: 286 gatgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggacca 345
||||||||| |||||||||||||||| || |||||||||||||| || || | ||||||
Sbjct: 322 gatgaaggggtcgatcctgacccagacgagcgagaagatggaggcgaggaggatggacca 263
Query: 346 gatgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggta 405
|| ||||| |||||||||||||||||||| | |||||| || |||||||||||||||||
Sbjct: 262 gagcacgacgatggtgggcgtccggttctgcctccccatcaggcccttgaggaacgggta 203
Query: 406 gaggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactg 465
|||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct: 202 caggtggacgatgacccagaaggagaagaagagcttgccgaacagcggcccccacgagcc 143
Query: 466 gtacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttgatgatg 523
|||||||||||||| ||||||||||| || ||||||| ||| | ||||||||||||
Sbjct: 142 gtacccgttgttgacggcgtcggagacccccgccacgatgcccaccatgttgatgatg 85
>gb|BG948058.1|BG948058 IP1_8_G12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 232 bits (117), Expect = 3e-059
Identities = 207/237 (87%)
Strand = Plus / Minus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
|||||||| |||||||||||||||| || |||||||||||||| || || | |||||||
Sbjct: 597 atgaaggggtcgatcctgacccagacgagcgagaagatggaggcgaggaggatggaccag 538
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| ||||| |||||||||||||||||||| | |||||| || |||||||||||||||||
Sbjct: 537 agcacgacgatggtgggcgtccggttctgcctccccatcaggcccttgaggaacgggtac 478
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| |
Sbjct: 477 aggtggacgatgacccagaaggagaagaagagcttgccgaacagcggcccccacgagccg 418
Query: 467 tacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttgatgatg 523
||||||||||||| ||||||||||| || ||||||| ||| | ||||||||||||
Sbjct: 417 tacccgttgttgacggcgtcggagacccccgccacgatgcccaccatgttgatgatg 361
>gb|CF072959.1|CF072959 FE1_27_D01.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_27_D01_A002 3', mRNA sequence
Length = 574
Score = 226 bits (114), Expect = 2e-057
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 286 gatgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggacca 345
||||||||| |||||||||||||||| || |||||||||||||| || || | ||||||
Sbjct: 316 gatgaaggggtcgatcctgacccagacgagcgagaagatggaggcgaggaggatggacca 257
Query: 346 gatgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggta 405
|| ||||| |||||||||||||||||||| | |||||| || ||||||||||||||||
Sbjct: 256 gagcacgacgatggtgggcgtccggttctgcctccccatcagggccttgaggaacgggta 197
Query: 406 gaggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactg 465
|||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct: 196 caggtggacgatgacccagaaggagaagaagagcttgccgaacagcggcccccacgagcc 137
Query: 466 gtacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttgatgatg 523
|||||||||||||| ||||||||||| || ||||||| ||| | ||||||||||||
Sbjct: 136 gtacccgttgttgacggcgtcggagacccccgccacgatgcccaccatgttgatgatg 79
>gb|CX608205.1|CX608205 ANR1_37_F12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_F12_A002 3', mRNA sequence
Length = 528
Score = 190 bits (96), Expect = 9e-047
Identities = 201/236 (85%)
Strand = Plus / Minus
Query: 286 gatgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggacca 345
||||||||| |||||||||||||| | || |||||||||||||| || || | ||||||
Sbjct: 246 gatgaaggggtcgatcctgacccaaacgagcgagaagatggaggcgaggaggatggacca 187
Query: 346 gatgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggta 405
| ||||| |||| |||||||||| |||| | |||||| || ||||||||||||||||
Sbjct: 186 aagcacgacgatggggggcgtccgggtctgcctccccatcagggccttgaggaacgggta 127
Query: 406 gaggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactg 465
|||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct: 126 caggtggacgatgacccagaaggagaagaagagcttgccgaacagcggcccccacgagcc 67
Query: 466 gtacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttgatga 521
|||||||||||||| ||||||||||| || ||||||| ||| | ||||||||||
Sbjct: 66 gtacccgttgttgacggcgtcggagacccccgccacgatgcccaccatgttgatga 11
>gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 647
Score = 165 bits (83), Expect = 5e-039
Identities = 182/215 (84%)
Strand = Plus / Minus
Query: 304 gacccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtggg 363
|||||| || || |||||||||||||||||||| | |||||||| || || || || ||
Sbjct: 483 gacccacaggagcgagaagatggaggccagcaggatggaccagacgatcacgatcgtcgg 424
Query: 364 cgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgaccca 423
|||||||||||| || |||| || ||||||||||||||||| || |||| ||| |||||
Sbjct: 423 cgtccggttctgccgtcccaccagacccttgaggaacgggtacagatggatgatcaccca 364
Query: 424 gaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggc 483
||| |||||||||||||| |||||||| || ||||| |||| ||||||||||||||| ||
Sbjct: 363 gaacgcgaagaagagcttcccgaagagaggaccccatgactcgtacccgttgttgatcgc 304
Query: 484 gtcggagatgccggccacgacgccgatgatgttga 518
|| ||||| || |||||||| ||||||| |||||
Sbjct: 303 gttcgagattccagccacgaccccgatgaagttga 269
>gb|CW315968.1|CW315968 104_807_11472644_116_35841_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472644, DNA
sequence
Length = 674
Score = 163 bits (82), Expect = 2e-038
Identities = 235/280 (83%), Gaps = 22/280 (7%)
Strand = Plus / Plus
Query: 40 cacggatatcatttgctatttaacattgattcaaaccttgtcctttgttcaattcctcgt 99
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 406 cacgaatatcatttgccatttaacatc----caaaccttgtcctttgttcaattcctcgt 461
Query: 100 ccggccgacaattctgggtccaagaacat---tacacaaaacgtagcatatgagctccaa 156
||| |||||||||||||| |||| || |||||||||| || |||| |||| |||
Sbjct: 462 ccg----acaattctgggtcccagaatatgtttacacaaaacataacata--agcttcaa 515
Query: 157 aacatga----caacacaaaatttctaaactgttgttt-ctccctatgcacaagctctag 211
||||| | ||| |||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct: 516 aacatcatcaacaatacaaaatttctaaattgttgttttctccctatgcacaagctccag 575
Query: 212 aacttttttgaaccgtgatagg---cagctcagcagttgatgccacactgcctgacgtcg 268
| ||||||||| | | ||| ||||||||||||||||||||||||||||||||||
Sbjct: 576 ga-ttttttgaatcttaataataaacagctcagcagttgatgccacactgcctgacgtcc 634
Query: 269 ggccccttggtcctgacgatgaagggatcgatcctgaccc 308
|| ||||| |||||||||||||| || |||||||||||||
Sbjct: 635 gggccctttgtcctgacgatgaaagggtcgatcctgaccc 674
>gb|BI074863.1|BI074863 IP1_16_A11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 497
Score = 149 bits (75), Expect = 3e-034
Identities = 120/135 (88%)
Strand = Plus / Minus
Query: 389 cccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagcttgccgaag 448
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 495 cccttgaggaacgggtacaggtggacgatgacccagaaggagaagaagagcttgccgaac 436
Query: 449 agcgggccccacgactggtacccgttgttgatggcgtcggagatgccggccacgacgccg 508
||||| |||||||| |||||||||||||| ||||||||||| || ||||||| |||
Sbjct: 435 agcggcccccacgagccgtacccgttgttgacggcgtcggagacccccgccacgatgccc 376
Query: 509 atgatgttgatgatg 523
| ||||||||||||
Sbjct: 375 accatgttgatgatg 361
>gb|AW282791.1|AW282791 LG1_290_D05.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 143 bits (72), Expect = 2e-032
Identities = 156/184 (84%)
Strand = Plus / Minus
Query: 296 tcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacgaca 355
|||||| |||||||||| |||||||||| |||||| || || |||||||||| || ||
Sbjct: 250 tcgatcttgacccagaggagggagaagacggaggcgaggaggacggaccagagcaccacg 191
Query: 356 atggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacg 415
||||||||||| |||||||| || |||||||| ||||||||||||||||| ||||| | |
Sbjct: 190 atggtgggcgtgcggttctgtcggcccatgagacccttgaggaacgggtacaggtgcatg 131
Query: 416 atgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttg 475
|| ||||| | ||||||||| | |||||| ||||| |||||||| |||| ||| ||| ||
Sbjct: 130 atcacccacatggcgaagaacaccttgccaaagagagggccccaggactcgtagccgctg 71
Query: 476 ttga 479
||||
Sbjct: 70 ttga 67
>gb|BF587843.1|BF587843 FM1_33_F03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 490
Score = 143 bits (72), Expect = 2e-032
Identities = 156/184 (84%)
Strand = Plus / Minus
Query: 296 tcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacgaca 355
|||||| |||||||||| |||||||||| |||||| || || |||||||||| || ||
Sbjct: 190 tcgatcttgacccagaggagggagaagacggaggcgaggaggacggaccagagcaccacg 131
Query: 356 atggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacg 415
||||||||||| |||||||| || |||||||| ||||||||||||||||| ||||| | |
Sbjct: 130 atggtgggcgtgcggttctgtcggcccatgagacccttgaggaacgggtacaggtgcatg 71
Query: 416 atgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttg 475
|| ||||| | ||||||||| | |||||| ||||| |||||||| |||| ||| ||| ||
Sbjct: 70 atcacccacatggcgaagaacaccttgccaaagagagggccccaggactcgtagccgctg 11
Query: 476 ttga 479
||||
Sbjct: 10 ttga 7
>gb|CW164547.1|CW164547 104_572_11152044_148_36463_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152044, DNA
sequence
Length = 606
Score = 141 bits (71), Expect = 7e-032
Identities = 155/183 (84%)
Strand = Plus / Plus
Query: 297 cgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacgacaa 356
||||| |||||||||| |||||||||| |||||| || || |||||||||| || || |
Sbjct: 1 cgatcttgacccagaggagggagaagacggaggcgaggaggacggaccagagcaccacga 60
Query: 357 tggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacga 416
|||||||||| |||||||| || |||||||| ||||||||||||||||| ||||| | ||
Sbjct: 61 tggtgggcgtgcggttctgtcggcccatgagacccttgaggaacgggtacaggtgcatga 120
Query: 417 tgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgt 476
| ||||| | ||||||||| | |||||| ||||| |||||||| |||| ||| ||| |||
Sbjct: 121 tcacccacatggcgaagaacaccttgccaaagagagggccccaggactcgtagccgctgt 180
Query: 477 tga 479
|||
Sbjct: 181 tga 183
>gb|CN134554.1|CN134554 OX1_27_C06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_C06_A002 3', mRNA sequence
Length = 677
Score = 139 bits (70), Expect = 3e-031
Identities = 154/182 (84%)
Strand = Plus / Minus
Query: 304 gacccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtggg 363
|||||| || || |||||||||||||||||||| | |||||||| || || || || ||
Sbjct: 197 gacccacaggagcgagaagatggaggccagcaggatggaccagacgatcacgatcgtcgg 138
Query: 364 cgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgaccca 423
|||||||||||| || |||| || ||||||||||||||||| || |||| ||| |||||
Sbjct: 137 cgtccggttctgccgtcccaccagacccttgaggaacgggtacagatggatgatcaccca 78
Query: 424 gaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggc 483
||| |||||||||||||| ||||| || || ||||| |||| ||||||||||||||| ||
Sbjct: 77 gaacgcgaagaagagcttcccgaaaagaggaccccatgactcgtacccgttgttgatcgc 18
Query: 484 gt 485
||
Sbjct: 17 gt 16
>gb|CW224629.1|CW224629 104_662_11203928_148_37201_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203928, DNA
sequence
Length = 714
Score = 137 bits (69), Expect = 1e-030
Identities = 150/177 (84%)
Strand = Plus / Plus
Query: 303 tgacccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgg 362
|||||||||| |||||||||| |||||| || || |||||||||| || || |||||||
Sbjct: 4 tgacccagaggagggagaagacggaggcgaggaggacggaccagagcaccacgatggtgg 63
Query: 363 gcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgaccc 422
|||| |||||||| || |||||||| ||||||||||||||||| ||||| | ||| ||||
Sbjct: 64 gcgtgcggttctgtcggcccatgagacccttgaggaacgggtacaggtgcatgatcaccc 123
Query: 423 agaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttga 479
| | ||||||||| | |||||| ||||| |||||||| |||| ||| ||| ||||||
Sbjct: 124 acatggcgaagaacaccttgccaaagagagggccccaggactcgtagccgctgttga 180
>gb|CN132882.1|CN132882 OX1_8_F12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_8_F12_A002 5', mRNA sequence
Length = 704
Score = 125 bits (63), Expect = 4e-027
Identities = 126/147 (85%)
Strand = Plus / Minus
Query: 366 tccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccaga 425
|||||||||| || |||| || ||||||||||||||||| || |||| ||| |||||||
Sbjct: 704 tccggttctgccgtcccaccagacccttgaggaacgggtacagatggatgatcacccaga 645
Query: 426 aggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcgt 485
| |||||||||||||| |||||||| || ||||| |||| ||||||||||||||| ||||
Sbjct: 644 acgcgaagaagagcttcccgaagagaggaccccatgactcgtacccgttgttgatcgcgt 585
Query: 486 cggagatgccggccacgacgccgatga 512
||||| || |||||||| |||||||
Sbjct: 584 tcgagattccagccacgaccccgatga 558
>gb|BG557221.1|BG557221 EM1_44_B10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 105 bits (53), Expect = 4e-021
Identities = 98/113 (86%)
Strand = Plus / Minus
Query: 380 cccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagc 439
|||||||| || |||||||| ||||| | ||| || || |||||||||||||||||||||
Sbjct: 221 cccatgagacctttgaggaatgggtacaagtgcacaatcacccagaaggcgaagaagagc 162
Query: 440 ttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
||||| |||||||||||||| || ||||| ||| ||||||| |||| ||||||
Sbjct: 161 ttgccaaagagcgggccccatgattggtaaccgctgttgatcgcgtaggagat 109
>gb|CF071834.1|CF071834 FE1_19_D03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_19_D03_A002 3', mRNA sequence
Length = 615
Score = 105 bits (53), Expect = 4e-021
Identities = 98/113 (86%)
Strand = Plus / Minus
Query: 380 cccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagc 439
|||||||| || |||||||| ||||| | ||| || || |||||||||||||||||||||
Sbjct: 230 cccatgagacctttgaggaatgggtacaagtgcacaatcacccagaaggcgaagaagagc 171
Query: 440 ttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
||||| |||||||||||||| || ||||| ||| ||||||| |||| ||||||
Sbjct: 170 ttgccaaagagcgggccccatgattggtaaccgctgttgatcgcgtaggagat 118
>gb|CN127278.1|CN127278 RHOH1_22_C03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_C03_A002 3', mRNA sequence
Length = 857
Score = 105 bits (53), Expect = 4e-021
Identities = 98/113 (86%)
Strand = Plus / Minus
Query: 380 cccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagc 439
|||||||| || |||||||| ||||| | ||| || || |||||||||||||||||||||
Sbjct: 379 cccatgagacctttgaggaatgggtacaagtgcacaatcacccagaaggcgaagaagagc 320
Query: 440 ttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
||||| |||||||||||||| || ||||| ||| ||||||| |||| ||||||
Sbjct: 319 ttgccaaagagcgggccccatgattggtaaccgctgttgatcgcgtaggagat 267
>gb|BG051983.1|BG051983 RHIZ2_7_D11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 558
Score = 103 bits (52), Expect = 2e-020
Identities = 115/136 (84%)
Strand = Plus / Minus
Query: 304 gacccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtggg 363
|||||| || || |||||||||||||||||||| | |||||||| || || || || ||
Sbjct: 136 gacccacaggagcgagaagatggaggccagcaggatggaccagacgatcacgatcgtcgg 77
Query: 364 cgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgaccca 423
|||||||||||| || |||| || ||||||||||||||||| || |||| ||| |||||
Sbjct: 76 cgtccggttctgccgtcccaccagacccttgaggaacgggtacagatggatgatcaccca 17
Query: 424 gaaggcgaagaagagc 439
||| ||||||||||||
Sbjct: 16 gaacgcgaagaagagc 1
>gb|BG241543.1|BG241543 RHIZ2_51_H04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 476
Score = 101 bits (51), Expect = 6e-020
Identities = 114/135 (84%)
Strand = Plus / Minus
Query: 304 gacccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtggg 363
|||||| || || |||||||||||||||||||| | |||||||| || || || || ||
Sbjct: 135 gacccacaggagcgagaagatggaggccagcaggatggaccagacgatcacgatcgtcgg 76
Query: 364 cgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgaccca 423
|||||||||||| || |||| || ||||||||||||||||| || |||| ||| |||||
Sbjct: 75 cgtccggttctgccgtcccaccagacccttgaggaacgggtacagatggatgatcaccca 16
Query: 424 gaaggcgaagaagag 438
||| |||||||||||
Sbjct: 15 gaacgcgaagaagag 1
>gb|BG103131.1|BG103131 RHIZ2_18_E07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 669
Score = 97.6 bits (49), Expect = 1e-018
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 380 cccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagc 439
|||||||| ||||||||||| ||||| | ||| || || |||||||||||||||||||||
Sbjct: 428 cccatgagacccttgaggaatgggtacaagtgcacaatcacccagaaggcgaagaagagc 369
Query: 440 ttgccgaagagcgggccccacgactggtacccgttgttgat 480
||||| ||||| |||||||| || ||||| ||| |||||||
Sbjct: 368 ttgccaaagagtgggccccatgattggtaaccgctgttgat 328
>gb|BI245815.1|BI245815 IP1_64_G05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 616
Score = 97.6 bits (49), Expect = 1e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 380 cccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagc 439
|||||||| || |||||||| ||||| | ||| || || |||||||||||||||||||||
Sbjct: 205 cccatgagacctttgaggaatgggtacaagtgcacaatcacccagaaggcgaagaagagc 146
Query: 440 ttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
||||| |||||||||||||| || || || ||| ||||||| |||| ||||||
Sbjct: 145 ttgccaaagagcgggccccatgattgataaccgctgttgatcgcgtaggagat 93
>gb|CD219969.1|CD219969 CCC1_60_F06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_60_F06_A007 3', mRNA sequence
Length = 579
Score = 97.6 bits (49), Expect = 1e-018
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 380 cccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagc 439
|||||||| ||||||||||| ||||| | ||| || || |||||||||||||||||||||
Sbjct: 165 cccatgagacccttgaggaatgggtacaagtgcacaatcacccagaaggcgaagaagagc 106
Query: 440 ttgccgaagagcgggccccacgactggtacccgttgttgat 480
||||| ||||| |||||||| || ||||| ||| |||||||
Sbjct: 105 ttgccaaagagtgggccccatgattggtaaccgctgttgat 65
>gb|CD233339.1|CD233339 SS1_13_G11.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_13_G11_A012 3', mRNA sequence
Length = 616
Score = 97.6 bits (49), Expect = 1e-018
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 380 cccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagc 439
|||||||| ||||||||||| ||||| | ||| || || |||||||||||||||||||||
Sbjct: 203 cccatgagacccttgaggaatgggtacaagtgcacaatcacccagaaggcgaagaagagc 144
Query: 440 ttgccgaagagcgggccccacgactggtacccgttgttgat 480
||||| ||||| |||||||| || ||||| ||| |||||||
Sbjct: 143 ttgccaaagagtgggccccatgattggtaaccgctgttgat 103
>gb|CF771740.1|CF771740 DSBF1_23_E06.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_23_E06_A010 3', mRNA sequence
Length = 633
Score = 97.6 bits (49), Expect = 1e-018
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 380 cccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagc 439
|||||||| ||||||||||| ||||| | ||| || || |||||||||||||||||||||
Sbjct: 220 cccatgagacccttgaggaatgggtacaagtgcacaatcacccagaaggcgaagaagagc 161
Query: 440 ttgccgaagagcgggccccacgactggtacccgttgttgat 480
||||| ||||| |||||||| || ||||| ||| |||||||
Sbjct: 160 ttgccaaagagtgggccccatgattggtaaccgctgttgat 120
>gb|BG239994.1|BG239994 OV1_31_F08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 559
Score = 91.7 bits (46), Expect = 6e-017
Identities = 148/182 (81%)
Strand = Plus / Minus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||||||||||||| | ||||| ||||| ||||| ||||| || || || | ||||||
Sbjct: 213 atgaagggatcgatcttcacccacagcagcgagaatatggaagcaaggaggatggaccaa 154
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| || || |||||||| ||||||||| ||||| ||||| ||||||
Sbjct: 153 acgatgacgatggtcggtgtacggttctgtttccccatgagacccttcaggaaagggtag 94
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
||||||| ||| ||||||| || ||||| ||||| |||||||| || ||||| || |||
Sbjct: 93 aggtggaggatcacccagattgcaaagaacagctttccgaagagtggaccccatgattgg 34
Query: 467 ta 468
||
Sbjct: 33 ta 32
>gb|CD227828.1|CD227828 CCC1_56_G02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_G02_A007 3', mRNA sequence
Length = 652
Score = 91.7 bits (46), Expect = 6e-017
Identities = 148/182 (81%)
Strand = Plus / Minus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||||||||||||| | ||||| ||||| ||||| ||||| || || || | ||||||
Sbjct: 233 atgaagggatcgatcttcacccacagcagcgagaatatggaagcaaggaggatggaccaa 174
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| || || |||||||| ||||||||| ||||| ||||| ||||||
Sbjct: 173 acgatgacgatggtcggtgtacggttctgtttccccatgagacccttcaggaaagggtag 114
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
||||||| ||| ||||||| || ||||| ||||| |||||||| || ||||| || |||
Sbjct: 113 aggtggaggatcacccagattgcaaagaacagctttccgaagagtggaccccatgattgg 54
Query: 467 ta 468
||
Sbjct: 53 ta 52
>gb|CX607839.1|CX607839 ANR1_31_C06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_31_C06_A002 3', mRNA sequence
Length = 841
Score = 91.7 bits (46), Expect = 6e-017
Identities = 148/182 (81%)
Strand = Plus / Minus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||||||||||||| | ||||| ||||| ||||| ||||| || || || | ||||||
Sbjct: 425 atgaagggatcgatcttcacccacagcagcgagaatatggaagcaaggaggatggaccaa 366
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| || || |||||||| ||||||||| ||||| ||||| ||||||
Sbjct: 365 acgatgacgatggtcggtgtacggttctgtttccccatgagacccttcaggaaagggtag 306
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
||||||| ||| ||||||| || ||||| ||||| |||||||| || ||||| || |||
Sbjct: 305 aggtggaggatcacccagattgcaaagaacagctttccgaagagtggaccccatgattgg 246
Query: 467 ta 468
||
Sbjct: 245 ta 244
>gb|CN128917.1|CN128917 RHOH1_32_H10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_H10_A002 3', mRNA sequence
Length = 785
Score = 89.7 bits (45), Expect = 2e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 380 cccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagc 439
|||||||| || |||||||| ||||| | ||| || || ||||| ||||||||||| |||
Sbjct: 375 cccatgagacctttgaggaatgggtacaagtgcacaatcacccaaaaggcgaagaaaagc 316
Query: 440 ttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
||||| |||||||||||||| || ||||| ||| ||||||| |||| ||||||
Sbjct: 315 ttgccaaagagcgggccccatgattggtaaccgctgttgatcgcgtaggagat 263
>gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11141932, DNA
sequence
Length = 621
Score = 87.7 bits (44), Expect = 9e-016
Identities = 98/116 (84%)
Strand = Plus / Plus
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
|||||||| ||||| |||||||| ||||||||| ||||||||||| ||||| | ||||
Sbjct: 147 acaatggtcggcgtgcggttctgcttccccatgaggcccttgaggaaggggtacaagtgg 206
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggta 468
|| || |||||||| |||||||||||||| || || || || ||||| ||||||||
Sbjct: 207 acaatcacccagaacgcgaagaagagcttcccaaaaagaggcccccatgactggta 262
>gb|AW286294.1|AW286294 LG1_330_A01.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 87.7 bits (44), Expect = 9e-016
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
|||||||| ||||| |||||||| ||||||||| ||||||||||| ||||| | ||||
Sbjct: 245 acaatggtcggcgtgcggttctgcttccccatgaggcccttgaggaaggggtacaagtgg 186
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggta 468
|| || |||||||| |||||||||||||| || || || || ||||| ||||||||
Sbjct: 185 acaatcacccagaacgcgaagaagagcttcccaaaaagaggcccccatgactggta 130
>gb|BE598541.1|BE598541 PI1_83_C07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 400
Score = 87.7 bits (44), Expect = 9e-016
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
|||||||| ||||| |||||||| ||||||||| ||||||||||| ||||| | ||||
Sbjct: 295 acaatggtcggcgtgcggttctgcttccccatgaggcccttgaggaaggggtacaagtgg 236
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggta 468
|| || |||||||| |||||||||||||| || || || || ||||| ||||||||
Sbjct: 235 acaatcacccagaacgcgaagaagagcttcccaaaaagaggcccccatgactggta 180
>gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_2_G12_A002 3', mRNA sequence
Length = 743
Score = 87.7 bits (44), Expect = 9e-016
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
|||||||| ||||| |||||||| ||||||||| ||||||||||| ||||| | ||||
Sbjct: 451 acaatggtcggcgtgcggttctgcttccccatgaggcccttgaggaaggggtacaagtgg 392
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggta 468
|| || |||||||| |||||||||||||| || || || || ||||| ||||||||
Sbjct: 391 acaatcacccagaacgcgaagaagagcttcccaaaaagaggcccccatgactggta 336
>gb|BG241497.1|BG241497 RHIZ2_50_A08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 574
Score = 85.7 bits (43), Expect = 4e-015
Identities = 103/123 (83%)
Strand = Plus / Minus
Query: 304 gacccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtggg 363
|||||| || || |||||||||||||||||||| | |||||||| || || || || ||
Sbjct: 125 gacccacaggagcgagaagatggaggccagcaggagggaccagacgatcacgatcgtcgg 66
Query: 364 cgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgaccca 423
|||||||||||| || |||| || ||||||||||||||||| || |||| ||| |||||
Sbjct: 65 cgtccggttctgccgtcccaccagacccttgaggaacgggtacagatggatgatcaccca 6
Query: 424 gaa 426
|||
Sbjct: 5 gaa 3
>gb|CL148486.1|CL148486 104_328_10593130_148_31782_254 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10593130, DNA
sequence
Length = 638
Score = 83.8 bits (42), Expect = 1e-014
Identities = 159/198 (80%)
Strand = Plus / Plus
Query: 286 gatgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggacca 345
|||||| ||||||||| | ||||| |||| |||||||||||| || || || | ||||||
Sbjct: 158 gatgaaaggatcgatcttcacccacagcaaggagaagatggacgcgaggaggatggacca 217
Query: 346 gatgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggta 405
|| | ||| || || || || |||||||| | |||||||| ||||| ||||| |||||
Sbjct: 218 gacaatgacgattgttggtgtgcggttctgcctgcccatgagacccttcaggaaggggta 277
Query: 406 gaggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactg 465
|| |||| ||| ||||||| | |||||| ||||| || |||||||| ||||| || ||
Sbjct: 278 cagatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattg 337
Query: 466 gtacccgttgttgatggc 483
||| ||| ||||||||||
Sbjct: 338 gtaaccgctgttgatggc 355
>gb|CW385345.1|CW385345 fsbb001f068m13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068m13, DNA
sequence
Length = 659
Score = 83.8 bits (42), Expect = 1e-014
Identities = 159/198 (80%)
Strand = Plus / Minus
Query: 286 gatgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggacca 345
|||||| ||||||||| | ||||| |||| |||||||||||| || || || | ||||||
Sbjct: 553 gatgaaaggatcgatcttcacccacagcaaggagaagatggacgcgaggaggatggacca 494
Query: 346 gatgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggta 405
|| | ||| || || || || |||||||| | |||||||| ||||| ||||| |||||
Sbjct: 493 gacaatgacgattgttggtgtgcggttctgcctgcccatgagacccttcaggaaggggta 434
Query: 406 gaggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactg 465
|| |||| ||| ||||||| | |||||| ||||| || |||||||| ||||| || ||
Sbjct: 433 cagatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattg 374
Query: 466 gtacccgttgttgatggc 483
||| ||| ||||||||||
Sbjct: 373 gtaaccgctgttgatggc 356
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 145,917
Number of Sequences: 832831
Number of extensions: 145917
Number of successful extensions: 41013
Number of sequences better than 0.5: 92
Number of HSP's better than 0.5 without gapping: 91
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40849
Number of HSP's gapped (non-prelim): 140
length of query: 526
length of database: 491,359,669
effective HSP length: 19
effective length of query: 507
effective length of database: 475,535,880
effective search space: 241096691160
effective search space used: 241096691160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)