BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS5e09.xg.2.1
(723 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW397587.1|CW397587 fsbb001f086k03f0 Sorghum methylation... 163 3e-038
gb|CW494887.1|CW494887 fsbb001f286g11k0 Sorghum methylation... 163 3e-038
gb|CW494886.1|CW494886 fsbb001f286g11f0 Sorghum methylation... 161 1e-037
gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum m... 105 6e-021
gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorgh... 105 6e-021
gb|CW289493.1|CW289493 104_768_11412507_148_35551_010 Sorgh... 105 6e-021
gb|CW091182.1|CW091182 104_453_10998407_114_33028_096 Sorgh... 56 5e-006
gb|CL154403.1|CL154403 104_339_10781385_114_31371_249 Sorgh... 48 0.001
gb|CW049014.1|CW049014 104_288_10513772_114_30200 Sorghum m... 48 0.001
gb|CW064664.1|CW064664 104_311_10522696_115_30121 Sorghum m... 48 0.001
gb|CW091183.1|CW091183 104_453_10998407_116_33032_096 Sorgh... 48 0.001
gb|CW111348.1|CW111348 104_484_11104259_148_34527_038 Sorgh... 48 0.001
gb|CW200287.1|CW200287 104_625_11183983_148_36862_020 Sorgh... 48 0.001
gb|CW249523.1|CW249523 104_711_11222896_116_35042_058 Sorgh... 48 0.001
gb|CW249524.1|CW249524 104_711_11222896_148_35046_058 Sorgh... 48 0.001
gb|CW346601.1|CW346601 fsbb001f006d02f0 Sorghum methylation... 48 0.001
gb|CW439050.1|CW439050 fsbb001f156p22f0 Sorghum methylation... 48 0.001
gb|CW477959.1|CW477959 fsbb001f235j04f0 Sorghum methylation... 48 0.001
gb|BE359001.1|BE359001 DG1_38_F04.b1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE359974.1|BE359974 DG1_60_C01.g2_A002 Dark Grown 1 (DG1... 48 0.001
gb|CF433443.1|CF433443 NIT1_27_C07.b1_A002 Nitrogen-deficie... 48 0.001
gb|CF485420.1|CF485420 POL1_31_A03.g1_A002 Pollen Sorghum b... 48 0.001
gb|CX614147.1|CX614147 GABR1_12_H01.b1_A002 GA- or brassino... 48 0.001
gb|BZ335454.1|BZ335454 hx97g09.b1 WGS-SbicolorF (JM107 adap... 44 0.018
gb|CL176129.1|CL176129 104_382_10892918_116_31763_134 Sorgh... 44 0.018
gb|CW170703.1|CW170703 104_581_11155350_148_36519_027 Sorgh... 44 0.018
gb|CW244784.1|CW244784 104_705_11220796_116_37592_002 Sorgh... 44 0.018
gb|CW244785.1|CW244785 104_705_11220796_148_37591_002 Sorgh... 44 0.018
gb|CW438418.1|CW438418 fsbb001f156a12k0 Sorghum methylation... 44 0.018
gb|CL155906.1|CL155906 104_342_10782487_114_31473_199 Sorgh... 40 0.28
gb|CW049015.1|CW049015 104_288_10513772_115_30199 Sorghum m... 40 0.28
gb|CW200286.1|CW200286 104_625_11183983_116_36861_020 Sorgh... 40 0.28
gb|CW239882.1|CW239882 104_698_11217900_116_37520_042 Sorgh... 40 0.28
gb|CW241137.1|CW241137 104_700_11218601_148_37542_077 Sorgh... 40 0.28
gb|CW316549.1|CW316549 104_808_11472951_116_35853_064 Sorgh... 40 0.28
gb|CW316550.1|CW316550 104_808_11472951_148_35857_064 Sorgh... 40 0.28
gb|CW404738.1|CW404738 fsbb001f097a06f0 Sorghum methylation... 40 0.28
gb|CW404739.1|CW404739 fsbb001f097a06k0 Sorghum methylation... 40 0.28
gb|CW472599.1|CW472599 fsbb001f227j19k0 Sorghum methylation... 40 0.28
gb|AW679257.1|AW679257 WS1_23_F01.g1_A002 Water-stressed 1 ... 40 0.28
gb|BE359082.1|BE359082 DG1_38_F04.g1_A002 Dark Grown 1 (DG1... 40 0.28
gb|CB926451.1|CB926451 ABA1_9_A08.b1_A012 Abscisic acid-tre... 40 0.28
gb|CB928358.1|CB928358 ABA1_15_H11.b1_A012 Abscisic acid-tr... 40 0.28
gb|CD212039.1|CD212039 HS1_68_G01.b1_A012 Heat-shocked seed... 40 0.28
gb|CD227847.1|CD227847 CCC1_56_A04.b1_A007 Callus culture/c... 40 0.28
gb|CN144834.1|CN144834 WOUND1_25_E11.b2_A002 Wounded leaves... 40 0.28
>gb|CW397587.1|CW397587 fsbb001f086k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086k03, DNA
sequence
Length = 705
Score = 163 bits (82), Expect = 3e-038
Identities = 271/335 (80%), Gaps = 3/335 (0%)
Strand = Plus / Plus
Query: 253 gcccctggatccgtgctgtacgtgagcttcggcagtgttgttcatgtcaccccagacgag 312
|||||||| |||||||| || |||| ||| || |||||||||||||| || | ||| |||
Sbjct: 13 gcccctggctccgtgctatatgtgaactttggtagtgttgttcatgtgactcaagatgag 72
Query: 313 ttggtggagatcgcgtggggcttggcgaacagcggcgtgccgttcctgttggtggtccgg 372
| |||||||| |||||| | |||||||||||| ||| || || | |||||| |||
Sbjct: 73 cttactgagatcgcatggggcctagcgaacagcggcaagccatttctatgggtggttcgg 132
Query: 373 cgtggccttgtggtcggagtggacaagca---ggagctcccggacgggttcatggcggcc 429
|||||||||||| | ||||||||| || |||||||||||| ||||| ||| ||||
Sbjct: 133 cgtggccttgtgcttttagtggacaaacatggggagctcccggatgggtttatgccggct 192
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| || ||||||||||| || ||||| || || | ||||| ||||| |||||
Sbjct: 193 gtggagggtagaggcaaggtgattgaatgggcaccacaactagaggttctagcacaccct 252
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagtatctatgag 549
||||| || ||| | ||||| || ||||||||||| || |||||||||||||||||
Sbjct: 253 gcagtagggggcttttggactcataatggatggaactccacattggagagtatctatgag 312
Query: 550 ggggtgcctatgctgtcgaggcccatctttggaga 584
|||||||| ||| |||||||||| |||||||||||
Sbjct: 313 ggggtgccaatgttgtcgaggccaatctttggaga 347
>gb|CW494887.1|CW494887 fsbb001f286g11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286g11, DNA
sequence
Length = 769
Score = 163 bits (82), Expect = 3e-038
Identities = 271/335 (80%), Gaps = 3/335 (0%)
Strand = Plus / Plus
Query: 253 gcccctggatccgtgctgtacgtgagcttcggcagtgttgttcatgtcaccccagacgag 312
|||||||| |||||||| || |||| ||| || |||||||||||||| || | ||| |||
Sbjct: 397 gcccctggctccgtgctatatgtgaactttggtagtgttgttcatgtgactcaagatgag 456
Query: 313 ttggtggagatcgcgtggggcttggcgaacagcggcgtgccgttcctgttggtggtccgg 372
| |||||||| |||||| | |||||||||||| ||| || || | |||||| |||
Sbjct: 457 cttactgagatcgcatggggcctagcgaacagcggcaagccatttctatgggtggttcgg 516
Query: 373 cgtggccttgtggtcggagtggacaagca---ggagctcccggacgggttcatggcggcc 429
|||||||||||| | ||||||||| || |||||||||||| ||||| ||| ||||
Sbjct: 517 cgtggccttgtgcttttagtggacaaacatggggagctcccggatgggtttatgccggct 576
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| || ||||||||||| || ||||| || || | ||||| ||||| |||||
Sbjct: 577 gtggagggtagaggcaaggtgattgaatgggcaccacaactagaggttctagcacaccct 636
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagtatctatgag 549
||||| || ||| | ||||| || ||||||||||| || |||||||||||||||||
Sbjct: 637 gcagtagggggcttttggactcataatggatggaactccacattggagagtatctatgag 696
Query: 550 ggggtgcctatgctgtcgaggcccatctttggaga 584
|||||||| ||| |||||||||| |||||||||||
Sbjct: 697 ggggtgccaatgttgtcgaggccaatctttggaga 731
Score = 91.7 bits (46), Expect = 8e-017
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 7 atcgtgcagaagatcttgggtcgcgccacggagagcacgacgaactcgtccggcgcaatc 66
|||||||| ||||||||| |||| ||||| |||| || || ||||| ||||| |||||
Sbjct: 157 atcgtgcacaagatcttgagtcgtgccaccgagacaacaacaaactcctccggtgcaata 216
Query: 67 ctcaacacgtttgaggatctcgagtcccgcgagctcgagatgatccgggacgaacttgcc 126
|||||||| | ||||| ||| ||||||| |||||| |||| |||| ||| || |||||
Sbjct: 217 ctcaacacatctgaggctcttgagtcccacgagcttcagatcatccatgacaaatttgcc 276
Query: 127 gacagaggtatcccacccttcgccgtcggcccgcttcacaagctca 172
| | |||||| |||||||| ||| |||| ||||||||||||||||
Sbjct: 277 cataaaggtattccaccctttgccatcggtccgcttcacaagctca 322
>gb|CW494886.1|CW494886 fsbb001f286g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286g11, DNA
sequence
Length = 862
Score = 161 bits (81), Expect = 1e-037
Identities = 270/334 (80%), Gaps = 3/334 (0%)
Strand = Plus / Minus
Query: 254 cccctggatccgtgctgtacgtgagcttcggcagtgttgttcatgtcaccccagacgagt 313
||||||| |||||||| || |||| ||| || |||||||||||||| || | ||| |||
Sbjct: 718 cccctggctccgtgctatatgtgaactttggtagtgttgttcatgtgactcaagatgagc 659
Query: 314 tggtggagatcgcgtggggcttggcgaacagcggcgtgccgttcctgttggtggtccggc 373
| |||||||| |||||| | |||||||||||| ||| || || | |||||| ||||
Sbjct: 658 ttactgagatcgcatggggcctagcgaacagcggcaagccatttctatgggtggttcggc 599
Query: 374 gtggccttgtggtcggagtggacaagca---ggagctcccggacgggttcatggcggccg 430
||||||||||| | ||||||||| || |||||||||||| ||||| ||| |||| |
Sbjct: 598 gtggccttgtgcttttagtggacaaacatggggagctcccggatgggtttatgccggctg 539
Query: 431 tggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccgg 490
||||||| || ||||||||||| || ||||| || || | ||||| ||||| ||||| |
Sbjct: 538 tggagggtagaggcaaggtgattgaatgggcaccacaactagaggttctagcacaccctg 479
Query: 491 cagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagtatctatgagg 550
|||| || ||| | ||||| || ||||||||||| || ||||||||||||||||||
Sbjct: 478 cagtagggggcttttggactcataatggatggaactccacattggagagtatctatgagg 419
Query: 551 gggtgcctatgctgtcgaggcccatctttggaga 584
||||||| ||| |||||||||| |||||||||||
Sbjct: 418 gggtgccaatgttgtcgaggccaatctttggaga 385
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 132 aggtatcccacccttcgccgtcggcccgcttcacaagctca 172
|||||| |||||||| ||| |||| ||||||||||||||||
Sbjct: 835 aggtattccaccctttgccatcggtccgcttcacaagctca 795
>gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515929, DNA
sequence
Length = 565
Score = 105 bits (53), Expect = 6e-021
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 436 ggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccggcagtc 495
|||||||||||||||||| |||||||||||||| ||||||||| || |||||||| |||
Sbjct: 535 ggcaggggcaaggtgatccggtgggcgccgcagctggaggtgctggcgcacccggcggtc 476
Query: 496 ggaggcnnctnnactcacaacggatggaactcnacgctggagagtatc 543
|| || | |||||||||||||||||||| ||| |||||||||||
Sbjct: 475 ggtggattttggactcacaacggatggaactccacgttggagagtatc 428
>gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412507, DNA
sequence
Length = 697
Score = 105 bits (53), Expect = 6e-021
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 436 ggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccggcagtc 495
|||||||||||||||||| |||||||||||||| ||||||||| || |||||||| |||
Sbjct: 473 ggcaggggcaaggtgatccggtgggcgccgcagctggaggtgctggcgcacccggcggtc 414
Query: 496 ggaggcnnctnnactcacaacggatggaactcnacgctggagagtatc 543
|| || | |||||||||||||||||||| ||| |||||||||||
Sbjct: 413 ggtggattttggactcacaacggatggaactccacgttggagagtatc 366
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 261 atccgtgctgtacgtgagcttcgg 284
||||||||||||||||||||||||
Sbjct: 651 atccgtgctgtacgtgagcttcgg 628
>gb|CW289493.1|CW289493 104_768_11412507_148_35551_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412507, DNA
sequence
Length = 704
Score = 105 bits (53), Expect = 6e-021
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 436 ggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccggcagtc 495
|||||||||||||||||| |||||||||||||| ||||||||| || |||||||| |||
Sbjct: 516 ggcaggggcaaggtgatccggtgggcgccgcagctggaggtgctggcgcacccggcggtc 575
Query: 496 ggaggcnnctnnactcacaacggatggaactcnacgctggagagtatc 543
|| || | |||||||||||||||||||| ||| |||||||||||
Sbjct: 576 ggtggattttggactcacaacggatggaactccacgttggagagtatc 623
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 261 atccgtgctgtacgtgagcttcgg 284
||||||||||||||||||||||||
Sbjct: 338 atccgtgctgtacgtgagcttcgg 361
>gb|CW091182.1|CW091182 104_453_10998407_114_33028_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998407, DNA
sequence
Length = 602
Score = 56.0 bits (28), Expect = 5e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 342 cagcggcgtgccgttcctgttggtggtccggc 373
|||||||||||||||||||| |||||||||||
Sbjct: 486 cagcggcgtgccgttcctgtgggtggtccggc 455
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgct 479
||||||||||||| ||||||||||
Sbjct: 369 gtgggcgccgcaggaggaggtgct 346
>gb|CL154403.1|CL154403 104_339_10781385_114_31371_249 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781385, DNA
sequence
Length = 735
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 342 cagcggcgtgccgttcctgttggtggtccggc 373
|||||||||||||||||| | |||||||||||
Sbjct: 100 cagcggcgtgccgttcctctgggtggtccggc 69
>gb|CW049014.1|CW049014 104_288_10513772_114_30200 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513772, DNA
sequence
Length = 556
Score = 48.1 bits (24), Expect = 0.001
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 511 cacaacggatggaactcnacgctggagagtatctatgagggggtgcctatgctgt 565
|||||||| |||||||| ||| ||||||| ||| ||||||||||| |||||||
Sbjct: 437 cacaacggctggaactccacgatggagagcgtctgcgagggggtgccgatgctgt 491
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 342 cagcggcgtgccgttcctgttggtggtccggc 373
|||||||||||||||||| | |||||||||||
Sbjct: 250 cagcggcgtgccgttcctctgggtggtccggc 281
>gb|CW064664.1|CW064664 104_311_10522696_115_30121 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522696, DNA
sequence
Length = 605
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgct 479
||||||||||||||||||||||||
Sbjct: 371 gtgggcgccgcagcaggaggtgct 348
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 265 gtgctgtacgtgagcttcgg 284
||||||||||||||||||||
Sbjct: 580 gtgctgtacgtgagcttcgg 561
>gb|CW091183.1|CW091183 104_453_10998407_116_33032_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998407, DNA
sequence
Length = 577
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 342 cagcggcgtgccgttcctgttggtggtccggc 373
|||||||||||||||||| | |||||||||||
Sbjct: 251 cagcggcgtgccgttcctctgggtggtccggc 282
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 456 gtgggcgccgcagcaggaggtgct 479
||||||||||||| ||||||||||
Sbjct: 368 gtgggcgccgcaggaggaggtgct 391
>gb|CW111348.1|CW111348 104_484_11104259_148_34527_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104259, DNA
sequence
Length = 568
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 342 cagcggcgtgccgttcctgttggtggtccggc 373
|||||||||||||||||| | |||||||||||
Sbjct: 69 cagcggcgtgccgttcctctgggtggtccggc 38
>gb|CW200287.1|CW200287 104_625_11183983_148_36862_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183983, DNA
sequence
Length = 699
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 314 tggtggagatcgcgtggggcttggcgaacagcggcgtgccgttcctgt 361
|||||||| |||||||||| |||| ||||||||| |||||||||||
Sbjct: 39 tggtggagttcgcgtgggggctggccaacagcggcaggccgttcctgt 86
Score = 40.1 bits (20), Expect = 0.28
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 511 cacaacggatggaactcnacgctggag 537
|||| |||||||||||| |||||||||
Sbjct: 233 cacagcggatggaactccacgctggag 259
>gb|CW249523.1|CW249523 104_711_11222896_116_35042_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222896, DNA
sequence
Length = 631
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 342 cagcggcgtgccgttcctgttggtggtccggc 373
|||||||||||||||||| | |||||||||||
Sbjct: 439 cagcggcgtgccgttcctctgggtggtccggc 470
>gb|CW249524.1|CW249524 104_711_11222896_148_35046_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222896, DNA
sequence
Length = 707
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 342 cagcggcgtgccgttcctgttggtggtccggc 373
|||||||||||||||||| | |||||||||||
Sbjct: 640 cagcggcgtgccgttcctctgggtggtccggc 609
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgct 479
||||||||||||| ||||||||||
Sbjct: 523 gtgggcgccgcaggaggaggtgct 500
>gb|CW346601.1|CW346601 fsbb001f006d02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f006d02, DNA
sequence
Length = 704
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 342 cagcggcgtgccgttcctgttggtggtccggc 373
|||||||||||||||||| | |||||||||||
Sbjct: 660 cagcggcgtgccgttcctctgggtggtccggc 629
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgct 479
||||||||||||| ||||||||||
Sbjct: 543 gtgggcgccgcaggaggaggtgct 520
>gb|CW439050.1|CW439050 fsbb001f156p22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156p22, DNA
sequence
Length = 466
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgct 479
||||||||||||||||||||||||
Sbjct: 395 gtgggcgccgcagcaggaggtgct 372
>gb|CW477959.1|CW477959 fsbb001f235j04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235j04, DNA
sequence
Length = 541
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 342 cagcggcgtgccgttcctgttggtggtccggc 373
|||||||||||||||||| | |||||||||||
Sbjct: 247 cagcggcgtgccgttcctctgggtggtccggc 278
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 456 gtgggcgccgcagcaggaggtgct 479
||||||||||||| ||||||||||
Sbjct: 364 gtgggcgccgcaggaggaggtgct 387
>gb|BE359001.1|BE359001 DG1_38_F04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 543
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 314 tggtggagatcgcgtggggcttggcgaacagcggcgtgccgttcctgt 361
|||||||| |||||||||| |||| ||||||||| |||||||||||
Sbjct: 386 tggtggagttcgcgtgggggctggccaacagcggcaggccgttcctgt 433
>gb|BE359974.1|BE359974 DG1_60_C01.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 487
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 314 tggtggagatcgcgtggggcttggcgaacagcggcgtgccgttcctgt 361
|||||||| |||||||||| |||| ||||||||| |||||||||||
Sbjct: 18 tggtggagttcgcgtgggggctggccaacagcggcaggccgttcctgt 65
Score = 40.1 bits (20), Expect = 0.28
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 511 cacaacggatggaactcnacgctggag 537
|||| |||||||||||| |||||||||
Sbjct: 212 cacagcggatggaactccacgctggag 238
>gb|CF433443.1|CF433443 NIT1_27_C07.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_27_C07_A002 3', mRNA sequence
Length = 542
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 456 gtgggcgccgcagcaggaggtgct 479
||||||||||||||||||||||||
Sbjct: 106 gtgggcgccgcagcaggaggtgct 129
>gb|CF485420.1|CF485420 POL1_31_A03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_31_A03_A002 5', mRNA sequence
Length = 534
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 318 ggagatcgcgtggggcttggcgaacagcggcgtgccgttcctgt 361
|||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 197 ggagatggcgtgggggttggcccgcagcggcgtgccgttcctgt 154
>gb|CX614147.1|CX614147 GABR1_12_H01.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_12_H01_A002 3', mRNA sequence
Length = 483
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 456 gtgggcgccgcagcaggaggtgct 479
||||||||||||||||||||||||
Sbjct: 107 gtgggcgccgcagcaggaggtgct 130
>gb|BZ335454.1|BZ335454 hx97g09.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx97g09 5', DNA sequence
Length = 228
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtg 477
||||||||||||||||||||||
Sbjct: 191 gtgggcgccgcagcaggaggtg 170
>gb|CL176129.1|CL176129 104_382_10892918_116_31763_134 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892918, DNA
sequence
Length = 736
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 atcctcaacacgtttgaggatctcgagtcc 93
|||||||||||||| ||||| |||||||||
Sbjct: 540 atcctcaacacgttcgaggacctcgagtcc 569
>gb|CW170703.1|CW170703 104_581_11155350_148_36519_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155350, DNA
sequence
Length = 561
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 64 atcctcaacacgtttgaggatctcgagtcc 93
|||||||||||||| ||||| |||||||||
Sbjct: 137 atcctcaacacgttcgaggacctcgagtcc 108
>gb|CW244784.1|CW244784 104_705_11220796_116_37592_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220796, DNA
sequence
Length = 703
Score = 44.1 bits (22), Expect = 0.018
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||| |||||||||||||||||||
Sbjct: 384 tccgtggtgtacgtgagcttcggcag 359
>gb|CW244785.1|CW244785 104_705_11220796_148_37591_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220796, DNA
sequence
Length = 711
Score = 44.1 bits (22), Expect = 0.018
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||| |||||||||||||||||||
Sbjct: 504 tccgtggtgtacgtgagcttcggcag 529
>gb|CW438418.1|CW438418 fsbb001f156a12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156a12, DNA
sequence
Length = 693
Score = 44.1 bits (22), Expect = 0.018
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||| |||||||||||||||||||
Sbjct: 474 tccgtggtgtacgtgagcttcggcag 499
>gb|CL155906.1|CL155906 104_342_10782487_114_31473_199 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782487, DNA
sequence
Length = 752
Score = 40.1 bits (20), Expect = 0.28
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 342 cagcggcgtgccgttcctgttggtggtccggc 373
|||| ||||||||||||| | |||||||||||
Sbjct: 526 cagcagcgtgccgttcctctgggtggtccggc 557
>gb|CW049015.1|CW049015 104_288_10513772_115_30199 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513772, DNA
sequence
Length = 379
Score = 40.1 bits (20), Expect = 0.28
Identities = 46/55 (83%)
Strand = Plus / Minus
Query: 511 cacaacggatggaactcnacgctggagagtatctatgagggggtgcctatgctgt 565
|||||||| |||||||| ||| ||||||| | | ||||||||||| |||||||
Sbjct: 335 cacaacggctggaactccacgatggagagcgtttgcgagggggtgccgatgctgt 281
>gb|CW200286.1|CW200286 104_625_11183983_116_36861_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183983, DNA
sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.28
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 511 cacaacggatggaactcnacgctggag 537
|||| |||||||||||| |||||||||
Sbjct: 687 cacagcggatggaactccacgctggag 661
>gb|CW239882.1|CW239882 104_698_11217900_116_37520_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11217900, DNA
sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.28
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 464 cgcagcaggaggtgctagctcacccggc 491
|||||| |||||||||||| ||||||||
Sbjct: 92 cgcagctggaggtgctagcgcacccggc 119
>gb|CW241137.1|CW241137 104_700_11218601_148_37542_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218601, DNA
sequence
Length = 710
Score = 40.1 bits (20), Expect = 0.28
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 342 cagcggcgtgccgttcctgttggtggtc 369
||||||| |||||||||||| |||||||
Sbjct: 659 cagcggcatgccgttcctgtgggtggtc 686
>gb|CW316549.1|CW316549 104_808_11472951_116_35853_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472951, DNA
sequence
Length = 665
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgct 479
||||||||||||| ||||||||||
Sbjct: 624 gtgggcgccgcaggaggaggtgct 601
>gb|CW316550.1|CW316550 104_808_11472951_148_35857_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472951, DNA
sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.28
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 342 cagcggcgtgccgttcctgttggtggtccggc 373
||||||||||||||||| ||||||||||||
Sbjct: 609 cagcggcgtgccgttccctctggtggtccggc 640
>gb|CW404738.1|CW404738 fsbb001f097a06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f097a06, DNA
sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.28
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 464 cgcagcaggaggtgctagctcacccggc 491
|||||| |||||||||||| ||||||||
Sbjct: 459 cgcagctggaggtgctagcgcacccggc 486
>gb|CW404739.1|CW404739 fsbb001f097a06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f097a06, DNA
sequence
Length = 690
Score = 40.1 bits (20), Expect = 0.28
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 464 cgcagcaggaggtgctagctcacccggc 491
|||||| |||||||||||| ||||||||
Sbjct: 454 cgcagctggaggtgctagcgcacccggc 427
>gb|CW472599.1|CW472599 fsbb001f227j19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f227j19, DNA
sequence
Length = 436
Score = 40.1 bits (20), Expect = 0.28
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 464 cgcagcaggaggtgctagctcacccggc 491
|||||| |||||||||||| ||||||||
Sbjct: 187 cgcagctggaggtgctagcgcacccggc 214
>gb|AW679257.1|AW679257 WS1_23_F01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.28
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 511 cacaacggatggaactcnacgctggag 537
|||| |||||||||||| |||||||||
Sbjct: 124 cacagcggatggaactccacgctggag 150
>gb|BE359082.1|BE359082 DG1_38_F04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 515
Score = 40.1 bits (20), Expect = 0.28
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 511 cacaacggatggaactcnacgctggag 537
|||| |||||||||||| |||||||||
Sbjct: 161 cacagcggatggaactccacgctggag 187
>gb|CB926451.1|CB926451 ABA1_9_A08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_9_A08_A012 3', mRNA sequence
Length = 568
Score = 40.1 bits (20), Expect = 0.28
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 464 cgcagcaggaggtgctagctcacccggc 491
|||||| |||||||||||| ||||||||
Sbjct: 54 cgcagctggaggtgctagcgcacccggc 81
>gb|CB928358.1|CB928358 ABA1_15_H11.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_15_H11_A012 3', mRNA sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.28
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 464 cgcagcaggaggtgctagctcacccggc 491
|||||| |||||||||||| ||||||||
Sbjct: 151 cgcagctggaggtgctagcgcacccggc 178
>gb|CD212039.1|CD212039 HS1_68_G01.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_68_G01_A012 3', mRNA sequence
Length = 562
Score = 40.1 bits (20), Expect = 0.28
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 464 cgcagcaggaggtgctagctcacccggc 491
|||||| |||||||||||| ||||||||
Sbjct: 38 cgcagctggaggtgctagcgcacccggc 65
>gb|CD227847.1|CD227847 CCC1_56_A04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_A04_A007 3', mRNA sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.28
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 464 cgcagcaggaggtgctagctcacccggc 491
|||||| |||||||||||| ||||||||
Sbjct: 104 cgcagctggaggtgctagcgcacccggc 131
>gb|CN144834.1|CN144834 WOUND1_25_E11.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_25_E11_A002 3', mRNA sequence
Length = 631
Score = 40.1 bits (20), Expect = 0.28
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 464 cgcagcaggaggtgctagctcacccggc 491
|||||| |||||||||||| ||||||||
Sbjct: 155 cgcagctggaggtgctagcgcacccggc 182
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 141,382
Number of Sequences: 832831
Number of extensions: 141382
Number of successful extensions: 38447
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 38361
Number of HSP's gapped (non-prelim): 81
length of query: 723
length of database: 491,359,669
effective HSP length: 20
effective length of query: 703
effective length of database: 474,703,049
effective search space: 333716243447
effective search space used: 333716243447
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)