BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN21e06.xg.2.1
(704 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI351515.1|BI351515 IP1_72_G08.g1_A002 Immature pannicle... 563 e-159
gb|BF481484.1|BF481484 FM1_19_G01.g1_A003 Floral-Induced Me... 472 e-131
gb|CD204626.1|CD204626 HS1_9_B12.b1_A012 Heat-shocked seedl... 131 1e-028
gb|CF761496.1|CF761496 DSAF1_77_A06.b1_A011 Drought-stresse... 131 1e-028
gb|CL152854.1|CL152854 104_336_10780290_114_31365_306 Sorgh... 113 2e-023
gb|CL185193.1|CL185193 104_399_10899358_116_32397_095 Sorgh... 46 0.004
gb|CW202998.1|CW202998 104_629_11185396_148_37061_008 Sorgh... 46 0.004
gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Me... 46 0.004
gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Me... 46 0.004
gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2... 46 0.004
>gb|BI351515.1|BI351515 IP1_72_G08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 514
Score = 563 bits (284), Expect = e-159
Identities = 431/479 (89%), Gaps = 2/479 (0%)
Strand = Plus / Plus
Query: 156 catcaagacgctgtcttgtgctgctctttcaaggaaaagcctgtgtttactttcggcaac 215
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4 catcaggacgctgtcttgtgctgctctttcaaggaaaagcctgtgtttacttttggcaac 63
Query: 216 cagatgggagttgacatgttagaaacgactttagtcgctctgcaagatctcacccttgac 275
||||||||| |||||||||||||||| ||| || | ||||| |||||||||||||| |||
Sbjct: 64 cagatgggaattgacatgttagaaacaactctaattgctctacaagatctcaccctggac 123
Query: 276 aagatctctgacgagcctggtagaaaggcactacatgcggaggttccgaaactgatggaa 335
||||| | |||| |||||| ||||||||| |||| ||||||||||||||||||||||||
Sbjct: 124 aagatttttgacctgcctggcagaaaggcattacacgcggaggttccgaaactgatggaa 183
Query: 336 cagggctatgcgtacctgccggctggggtgtgcctgtctgggatgggccgccatgtctcc 395
||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 184 cagggatatgcgtacttgccggctggggtatgcttgtctgggatgggccgccatgtctcc 243
Query: 396 tacgagcaagctgttgcttggaaagttctcggtgaggacggcaacgtgcactgcctcgcc 455
|| ||| |||||||||| ||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 244 tatgaggaagctgttgcgtggaaagttctcggtgaagatggcaacgtacactgcctcgcc 303
Query: 456 ttctgtttcgtcaactggtccttcgtctgatgtgatccaagtgcaccgcggaaactttac 515
|||||||||||||||||||||||||| ||||| ||| | | || | | | |||||||||
Sbjct: 304 ttctgtttcgtcaactggtccttcgtttgatgcaatctaggcgccctgtgcaaactttac 363
Query: 516 gatcagcgtccatttttgcattctctgtagacgagaatggtgcggtgttgctgctactgt 575
|||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 364 gatcggcatccatttttgcattctctgtagacgagaatggtacggtgttgctgttactgt 423
Query: 576 tagctaggcaacggcatgttcaggtagtctt--ggggaaagccagtattgtgaagatgt 632
|||||||| ||| |||||||||||||||| ||| |||||||||||||| |||||||
Sbjct: 424 tagctaggtaacacgatgttcaggtagtctttggggaaaagccagtattgtaaagatgt 482
>gb|BF481484.1|BF481484 FM1_19_G01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 513
Score = 472 bits (238), Expect = e-131
Identities = 347/382 (90%), Gaps = 1/382 (0%)
Strand = Plus / Plus
Query: 252 gctctgcaagatctcacccttgacaagatctctgacgagcctggtagaaaggcactacat 311
||||| |||||||||||||| |||||||| | |||||||||||| ||||||||| ||||
Sbjct: 17 gctctacaagatctcaccctggacaagatttttgacgagcctggcagaaaggcattacac 76
Query: 312 gcggaggttccgaaactgatggaacagggctatgcgtacctgccggctggggtgtgcctg 371
||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct: 77 gcggaggttccgaaattgatggaacagggctatgcgtacttgccggctggggtatgcttg 136
Query: 372 tctgggatgggccgccatgtctcctacgagcaagctgttgcttggaaagttctcggtgag 431
|||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct: 137 tctgggatgggccgccatgtctcctatgaggaagctgttgcgtggaaagttctcggtgaa 196
Query: 432 gacggcaacgtgcactgcctcgccttctgtttcgtcaactggtccttcgtctgatgtgat 491
|| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 197 gatggcaacgtacactgcctcgccttctgtttcgtcaactggtccttcgtttgatgcaat 256
Query: 492 ccaagtgcaccgcggaaactttacgatcagcgtccatttttgcattctctgtagacgaga 551
| | | || | | | |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 257 ctaggcgccctgtgcaaactttacgatcagcatccatttttgcattctctgtagacgaga 316
Query: 552 atggtgcggtgttgctgctactgttagctaggcaacggcatgttcaggtagtcttgggg- 610
||||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct: 317 atggtacggtgttgctgttactgttagctaggtaacgcgatgttcaggtagtcttgggga 376
Query: 611 aaagccagtattgtgaagatgt 632
|||||||||||||| |||||||
Sbjct: 377 aaagccagtattgtaaagatgt 398
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 630 tgtaaatttgcgcccgtttccgctaatttaaccatctgaacttgctgttgtttgttaagg 689
||||||||||||| |||||| |||||||||||| |||||||||||| ||||||| ||||
Sbjct: 407 tgtaaatttgcgctcgtttctgctaatttaacccgctgaacttgctgctgtttgtgaagg 466
Query: 690 ccaggggcactc 701
| ||||||||||
Sbjct: 467 caaggggcactc 478
>gb|CD204626.1|CD204626 HS1_9_B12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_9_B12_A012 3', mRNA sequence
Length = 654
Score = 131 bits (66), Expect = 1e-028
Identities = 135/158 (85%)
Strand = Plus / Plus
Query: 324 aaactgatggaacagggctatgcgtacctgccggctggggtgtgcctgtctgggatgggc 383
||||| |||||||||||||| || |||||||| | || |||||| |||| || |||||
Sbjct: 283 aaactaatggaacagggctacgcatacctgccatcaggtgtgtgcatgtcaggaatgggt 342
Query: 384 cgccatgtctcctacgagcaagctgttgcttggaaagttctcggtgaggacggcaacgtg 443
|||||||| || | ||| |||||||| || ||||| || |||||||||||| ||||||||
Sbjct: 343 cgccatgtttctttcgaccaagctgtggcgtggaaggtgctcggtgaggacagcaacgtg 402
Query: 444 cactgcctcgccttctgtttcgtcaactggtccttcgt 481
|||||||| || ||||| ||||||||||||||||||||
Sbjct: 403 cactgcctggcattctgcttcgtcaactggtccttcgt 440
Score = 50.1 bits (25), Expect = 3e-004
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 121 aagctggggaatcacttttgacaatgttctgggaccatcaagacgctgtcttgtgctgct 180
||||||| ||| || | |||| |||| ||||| | |||| ||||||||| |||||||||
Sbjct: 80 aagctggcgaagcattgttgaaaatgctctggcatcatccagacgctgttctgtgctgct 139
Query: 181 ctttcaaggaaaagcctgtgtttac 205
|||| ||||| || ||| |||||||
Sbjct: 140 cttttaaggagaaacctatgtttac 164
>gb|CF761496.1|CF761496 DSAF1_77_A06.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_77_A06_A011 5', mRNA sequence
Length = 503
Score = 131 bits (66), Expect = 1e-028
Identities = 135/158 (85%)
Strand = Plus / Plus
Query: 324 aaactgatggaacagggctatgcgtacctgccggctggggtgtgcctgtctgggatgggc 383
||||| |||||||||||||| || |||||||| | || |||||| |||| || |||||
Sbjct: 185 aaactaatggaacagggctacgcatacctgccatcaggtgtgtgcatgtcaggaatgggt 244
Query: 384 cgccatgtctcctacgagcaagctgttgcttggaaagttctcggtgaggacggcaacgtg 443
|||||||| || | ||| |||||||| || ||||| || |||||||||||| ||||||||
Sbjct: 245 cgccatgtttctttcgaccaagctgtggcgtggaaggtgctcggtgaggacagcaacgtg 304
Query: 444 cactgcctcgccttctgtttcgtcaactggtccttcgt 481
|||||||| || ||||| ||||||||||||||||||||
Sbjct: 305 cactgcctggcattctgcttcgtcaactggtccttcgt 342
Score = 46.1 bits (23), Expect = 0.004
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 143 aatgttctgggaccatcaagacgctgtcttgtgctgctctttcaaggaaaagcctgtgtt 202
|||| ||||| | |||| ||||||||| ||||||||||||| ||||| || ||| ||||
Sbjct: 4 aatgctctggcatcatccagacgctgttctgtgctgctcttttaaggagaaacctatgtt 63
Query: 203 tac 205
|||
Sbjct: 64 tac 66
>gb|CL152854.1|CL152854 104_336_10780290_114_31365_306 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780290, DNA
sequence
Length = 772
Score = 113 bits (57), Expect = 2e-023
Identities = 123/145 (84%)
Strand = Plus / Plus
Query: 337 agggctatgcgtacctgccggctggggtgtgcctgtctgggatgggccgccatgtctcct 396
||||||| || |||||||| | || |||||| |||| || ||||| |||||||| || |
Sbjct: 99 agggctacgcatacctgccatcaggtgtgtgcatgtcaggaatgggtcgccatgtttctt 158
Query: 397 acgagcaagctgttgcttggaaagttctcggtgaggacggcaacgtgcactgcctcgcct 456
||| |||||||| || ||||| || |||||||||||| |||||||||||||||| || |
Sbjct: 159 tcgaccaagctgtggcgtggaaggtgctcggtgaggacagcaacgtgcactgcctggcat 218
Query: 457 tctgtttcgtcaactggtccttcgt 481
|||| ||||||||||||||||||||
Sbjct: 219 tctgcttcgtcaactggtccttcgt 243
>gb|CL185193.1|CL185193 104_399_10899358_116_32397_095 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899358, DNA
sequence
Length = 355
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgt 481
|||||||||||||||| ||||| ||||||||||||||
Sbjct: 175 gcactgcctcgccttcatgttcgtgaactggtccttcgt 213
>gb|CW202998.1|CW202998 104_629_11185396_148_37061_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185396, DNA
sequence
Length = 692
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttg 57
||||||||||| | | ||||||||| |||||||||||| |||||||
Sbjct: 433 tgctgggcagaggatgctttctggcttccctgaagctgccacacttg 387
Score = 42.1 bits (21), Expect = 0.068
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 121 aagctggggaatcacttttgacaatgttctgggaccatcaagacgctgtcttgtgctgct 180
||||||| ||| || | |||| |||| ||||| | |||| ||||||||| |||||||||
Sbjct: 212 aagctggtgaagcattgttgaaaatgctctggcatcatccagacgctgttctgtgctgct 153
Query: 181 ctttcaagg 189
|||| ||||
Sbjct: 152 cttttaagg 144
>gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 510
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgt 481
|||||||||||||||| ||||| ||||||||||||||
Sbjct: 283 gcactgcctcgccttcatgttcgtgaactggtccttcgt 321
>gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 567
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgt 481
|||||||||||||||| ||||| ||||||||||||||
Sbjct: 396 gcactgcctcgccttcatgttcgtgaactggtccttcgt 434
>gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 369
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgt 481
|||||||||||||||| ||||| ||||||||||||||
Sbjct: 241 gcactgcctcgccttcatgttcgtgaactggtccttcgt 279
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 144,619
Number of Sequences: 832831
Number of extensions: 144619
Number of successful extensions: 39797
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39776
Number of HSP's gapped (non-prelim): 19
length of query: 704
length of database: 491,359,669
effective HSP length: 20
effective length of query: 684
effective length of database: 474,703,049
effective search space: 324696885516
effective search space used: 324696885516
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)