BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBL3a04.xg.2.1
         (369 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF429782.1|CF429782  PH1_24_D04.b1_A002 Phosphorous-defic...    74   1e-011

>gb|CF429782.1|CF429782 PH1_24_D04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
           cDNA clone PH1_24_D04_A002 3', mRNA sequence
          Length = 497

 Score = 73.8 bits (37), Expect = 1e-011
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                     
Query: 68  ggctacatgtaccacaagagaagcctagccgagctgaagnnnaaggaggccgaacaca 125
           |||||||||||||||||||||||||||||| ||||||||   ||||||| | ||||||
Sbjct: 90  ggctacatgtaccacaagagaagcctagccaagctgaagatgaaggaggtcaaacaca 147



  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,686
Number of Sequences: 832831
Number of extensions: 72686
Number of successful extensions: 18970
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18966
Number of HSP's gapped (non-prelim): 4
length of query: 369
length of database: 491,359,669
effective HSP length: 19
effective length of query: 350
effective length of database: 475,535,880
effective search space: 166437558000
effective search space used: 166437558000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)