BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ7h03.xg.2.1
(487 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW071272.1|CW071272 104_323_10591451_114_30471 Sorghum m... 137 1e-030
gb|CW497105.1|CW497105 fsbb001f289k18f0 Sorghum methylation... 137 1e-030
gb|CW376890.1|CW376890 fsbb001f054p19f0 Sorghum methylation... 125 4e-027
gb|CW042854.1|CW042854 104_276_10507318_116_30489 Sorghum m... 94 1e-017
gb|CW131966.1|CW131966 104_515_11115958_116_34797_093 Sorgh... 94 1e-017
gb|CW146141.1|CW146141 104_539_11138833_116_34988_015 Sorgh... 86 3e-015
gb|CW385133.1|CW385133 fsbb001f068h22f0 Sorghum methylation... 86 3e-015
gb|CW021763.1|CW021763 104_160_10431448_5_30005 Sorghum met... 66 3e-009
gb|CW067037.1|CW067037 104_314_10524024_115_30127 Sorghum m... 66 3e-009
gb|CW094129.1|CW094129 104_457_11000145_116_37477_039 Sorgh... 66 3e-009
gb|CW155127.1|CW155127 104_557_11145969_116_36359_039 Sorgh... 66 3e-009
gb|CW264940.1|CW264940 104_734_11231586_148_35262_079 Sorgh... 66 3e-009
gb|CW454037.1|CW454037 fsbb001f198e20f0 Sorghum methylation... 66 3e-009
gb|AW287022.2|AW287022 LG1_264_E07.b1_A002 Light Grown 1 (L... 66 3e-009
gb|AW922579.1|AW922579 DG1_45_F02.g1_A002 Dark Grown 1 (DG1... 66 3e-009
gb|BE360223.1|BE360223 DG1_62_C07.b1_A002 Dark Grown 1 (DG1... 66 3e-009
gb|BE360326.1|BE360326 DG1_62_C07.g1_A002 Dark Grown 1 (DG1... 66 3e-009
gb|BE360993.1|BE360993 DG1_68_E11.g1_A002 Dark Grown 1 (DG1... 66 3e-009
gb|CF427262.1|CF427262 PH1_4_F06.g1_A002 Phosphorous-defici... 66 3e-009
gb|CF430008.1|CF430008 PH1_25_B05.g1_A002 Phosphorous-defic... 66 3e-009
gb|CN127798.1|CN127798 RHOH1_25_D05.b1_A002 Acid- and alkal... 66 3e-009
gb|CN127879.1|CN127879 RHOH1_25_D05.g1_A002 Acid- and alkal... 66 3e-009
gb|CN129542.1|CN129542 RHOH1_36_B03.b3_A002 Acid- and alkal... 66 3e-009
gb|CN129628.1|CN129628 RHOH1_36_B03.g1_A002 Acid- and alkal... 66 3e-009
gb|CW376891.1|CW376891 fsbb001f054p19k0 Sorghum methylation... 62 5e-008
gb|CW042853.1|CW042853 104_276_10507318_114_30483 Sorghum m... 58 8e-007
gb|CW071274.1|CW071274 104_323_10591451_116_30454 Sorghum m... 58 8e-007
gb|CW071276.1|CW071276 104_323_10591452_116_30437 Sorghum m... 58 8e-007
gb|CW131967.1|CW131967 104_515_11115958_148_34793_093 Sorgh... 58 8e-007
gb|CN140719.1|CN140719 OX1_46_B10.g1_A002 Oxidatively-stres... 58 8e-007
gb|CW385134.1|CW385134 fsbb001f068h22k0 Sorghum methylation... 44 0.012
gb|CW109957.1|CW109957 104_482_11103418_116_34510_039 Sorgh... 40 0.18
>gb|CW071272.1|CW071272 104_323_10591451_114_30471 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591451, DNA
sequence
Length = 734
Score = 137 bits (69), Expect = 1e-030
Identities = 86/94 (91%)
Strand = Plus / Minus
Query: 208 cagctactcttccatggannnnnnnctgtactgcaagacccacttcgagcagctcttcaa 267
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 216 cagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaa 157
Query: 268 ggagaccgggagcttctccaagaacttcacgcca 301
|||||||||||||||||||||||| |||||||||
Sbjct: 156 ggagaccgggagcttctccaagaagttcacgcca 123
Score = 58.0 bits (29), Expect = 8e-007
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Minus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacncaggannngtgcgcggagtgcgaca 110
||||||||||||||||||||| |||||||||| ||||| |||| ||| ||||||||
Sbjct: 529 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 473
Query: 111 aga 113
|||
Sbjct: 472 aga 470
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/49 (83%)
Strand = Plus / Minus
Query: 154 ctaccataagacatgcttcnannnnngccactgcaaagggatcctctcg 202
|||||| |||||||||||| | |||||||||| ||||||||||||
Sbjct: 429 ctaccacaagacatgcttcaagtgcagccactgcaaggggatcctctcg 381
>gb|CW497105.1|CW497105 fsbb001f289k18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f289k18, DNA
sequence
Length = 711
Score = 137 bits (69), Expect = 1e-030
Identities = 86/94 (91%)
Strand = Plus / Plus
Query: 208 cagctactcttccatggannnnnnnctgtactgcaagacccacttcgagcagctcttcaa 267
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 179 cagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaa 238
Query: 268 ggagaccgggagcttctccaagaacttcacgcca 301
|||||||||||||||||||||||| |||||||||
Sbjct: 239 ggagaccgggagcttctccaagaagttcacgcca 272
Score = 93.7 bits (47), Expect = 1e-017
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 333 caagggcccccagcaagctatcatctncnttttctggtactcannataannnnncagctt 392
|||||||||| ||||||||||| ||| | |||||||||||||| |||| |||| |
Sbjct: 519 caagggccccaagcaagctatcgtctgcattttctggtactcaggataagtgtgcagcat 578
Query: 393 gccagaaaacagtgtacccgctggag 418
||||||||||||||||||||||||||
Sbjct: 579 gccagaaaacagtgtacccgctggag 604
>gb|CW376890.1|CW376890 fsbb001f054p19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054p19, DNA
sequence
Length = 642
Score = 125 bits (63), Expect = 4e-027
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 208 cagctactcttccatggannnnnnnctgtactgcaagacccacttcgagcagctcttcaa 267
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 557 cagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaa 616
Query: 268 ggagaccgggagcttctccaagaa 291
||||||||||||||||||||||||
Sbjct: 617 ggagaccgggagcttctccaagaa 640
Score = 58.0 bits (29), Expect = 8e-007
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacncaggannngtgcgcggagtgcgaca 110
||||||||||||||||||||| |||||||||| ||||| |||| ||| ||||||||
Sbjct: 244 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 300
Query: 111 aga 113
|||
Sbjct: 301 aga 303
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/49 (83%)
Strand = Plus / Plus
Query: 154 ctaccataagacatgcttcnannnnngccactgcaaagggatcctctcg 202
|||||| |||||||||||| | |||||||||| ||||||||||||
Sbjct: 344 ctaccacaagacatgcttcaagtgcagccactgcaaggggatcctctcg 392
>gb|CW042854.1|CW042854 104_276_10507318_116_30489 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507318, DNA
sequence
Length = 631
Score = 93.7 bits (47), Expect = 1e-017
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctncnttttctggtactcannataannnnncagctt 392
|||||||||| ||||||||||| ||| | |||||||||||||| |||| |||| |
Sbjct: 368 caagggccccaagcaagctatcgtctgcattttctggtactcaggataagtgtgcagcat 309
Query: 393 gccagaaaacagtgtacccgctggag 418
||||||||||||||||||||||||||
Sbjct: 308 gccagaaaacagtgtacccgctggag 283
>gb|CW131966.1|CW131966 104_515_11115958_116_34797_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115958, DNA
sequence
Length = 553
Score = 93.7 bits (47), Expect = 1e-017
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctncnttttctggtactcannataannnnncagctt 392
|||||||||| ||||||||||| ||| | |||||||||||||| |||| |||| |
Sbjct: 415 caagggccccaagcaagctatcgtctgcattttctggtactcaggataagtgtgcagcat 356
Query: 393 gccagaaaacagtgtacccgctggag 418
||||||||||||||||||||||||||
Sbjct: 355 gccagaaaacagtgtacccgctggag 330
Score = 48.1 bits (24), Expect = 8e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
|||||||||||| |||||||| |||||| |||| ||||| |||||||
Sbjct: 64 tgtactgcaagatccacttcgggcagctgttcatggagaaggggagct 17
>gb|CW146141.1|CW146141 104_539_11138833_116_34988_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138833, DNA
sequence
Length = 736
Score = 85.7 bits (43), Expect = 3e-015
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 208 cagctactcttccatggannnnnnnctgtactgcaagacccacttcgagcagctcttcaa 267
|||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 75 cagctactcttccatggacggtgtcctgtactgcaagacgcactttgaacagctcttcaa 134
Query: 268 ggagaccgggagcttctccaagaa 291
|||||| |||| ||||||||||||
Sbjct: 135 ggagacagggaccttctccaagaa 158
Score = 44.1 bits (22), Expect = 0.012
Identities = 52/65 (80%)
Strand = Plus / Plus
Query: 344 agcaagctatcatctncnttttctggtactcannataannnnncagcttgccagaaaaca 403
||||||||||||||| | || ||||| ||||| |||| |||| |||||||||||
Sbjct: 472 agcaagctatcatctgcattctctggaactcaagataaatgcgcagcctgccagaaaacc 531
Query: 404 gtgta 408
|||||
Sbjct: 532 gtgta 536
>gb|CW385133.1|CW385133 fsbb001f068h22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068h22, DNA
sequence
Length = 739
Score = 85.7 bits (43), Expect = 3e-015
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 208 cagctactcttccatggannnnnnnctgtactgcaagacccacttcgagcagctcttcaa 267
|||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 148 cagctactcttccatggacggtgtcctgtactgcaagacgcactttgaacagctcttcaa 207
Query: 268 ggagaccgggagcttctccaagaa 291
|||||| |||| ||||||||||||
Sbjct: 208 ggagacagggaccttctccaagaa 231
Score = 44.1 bits (22), Expect = 0.012
Identities = 52/65 (80%)
Strand = Plus / Plus
Query: 344 agcaagctatcatctncnttttctggtactcannataannnnncagcttgccagaaaaca 403
||||||||||||||| | || ||||| ||||| |||| |||| |||||||||||
Sbjct: 545 agcaagctatcatctgcattctctggaactcaagataaatgcgcagcctgccagaaaacc 604
Query: 404 gtgta 408
|||||
Sbjct: 605 gtgta 609
>gb|CW021763.1|CW021763 104_160_10431448_5_30005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431448, DNA
sequence
Length = 420
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 120 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 164
>gb|CW067037.1|CW067037 104_314_10524024_115_30127 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10524024, DNA
sequence
Length = 543
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 363 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 319
>gb|CW094129.1|CW094129 104_457_11000145_116_37477_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11000145, DNA
sequence
Length = 690
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 91 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 47
>gb|CW155127.1|CW155127 104_557_11145969_116_36359_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145969, DNA
sequence
Length = 740
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 475 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 431
>gb|CW264940.1|CW264940 104_734_11231586_148_35262_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231586, DNA
sequence
Length = 712
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 290 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 334
>gb|CW454037.1|CW454037 fsbb001f198e20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198e20, DNA
sequence
Length = 763
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 258 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 302
>gb|AW287022.2|AW287022 LG1_264_E07.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 511
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 310 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 354
>gb|AW922579.1|AW922579 DG1_45_F02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 629
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 4 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 48
>gb|BE360223.1|BE360223 DG1_62_C07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 597
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 310 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 354
>gb|BE360326.1|BE360326 DG1_62_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 14 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 58
>gb|BE360993.1|BE360993 DG1_68_E11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 22 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 66
>gb|CF427262.1|CF427262 PH1_4_F06.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_F06_A002 5', mRNA sequence
Length = 567
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 455 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 499
>gb|CF430008.1|CF430008 PH1_25_B05.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_B05_A002 5', mRNA sequence
Length = 723
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 713 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 669
>gb|CN127798.1|CN127798 RHOH1_25_D05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_D05_A002 3', mRNA sequence
Length = 720
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 88 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 132
>gb|CN127879.1|CN127879 RHOH1_25_D05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_D05_A002 5', mRNA sequence
Length = 692
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 230 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 274
>gb|CN129542.1|CN129542 RHOH1_36_B03.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_B03_A002 3', mRNA sequence
Length = 819
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 172 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 216
>gb|CN129628.1|CN129628 RHOH1_36_B03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_B03_A002 5', mRNA sequence
Length = 784
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 274 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 318
>gb|CW376891.1|CW376891 fsbb001f054p19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054p19, DNA
sequence
Length = 483
Score = 61.9 bits (31), Expect = 5e-008
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 208 cagctactcttccatggannnnnnnctgtactgcaagacccacttcgagcag 259
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 52 cagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcag 1
Score = 58.0 bits (29), Expect = 8e-007
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Minus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacncaggannngtgcgcggagtgcgaca 110
||||||||||||||||||||| |||||||||| ||||| |||| ||| ||||||||
Sbjct: 365 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 309
Query: 111 aga 113
|||
Sbjct: 308 aga 306
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/49 (83%)
Strand = Plus / Minus
Query: 154 ctaccataagacatgcttcnannnnngccactgcaaagggatcctctcg 202
|||||| |||||||||||| | |||||||||| ||||||||||||
Sbjct: 265 ctaccacaagacatgcttcaagtgcagccactgcaaggggatcctctcg 217
>gb|CW042853.1|CW042853 104_276_10507318_114_30483 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507318, DNA
sequence
Length = 576
Score = 58.0 bits (29), Expect = 8e-007
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacncaggannngtgcgcggagtgcgaca 110
||||||||||||||||||||| |||||||||| ||||| |||| ||| ||||||||
Sbjct: 334 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 390
Query: 111 aga 113
|||
Sbjct: 391 aga 393
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/49 (83%)
Strand = Plus / Plus
Query: 154 ctaccataagacatgcttcnannnnngccactgcaaagggatcctctcg 202
|||||| |||||||||||| | |||||||||| ||||||||||||
Sbjct: 434 ctaccacaagacatgcttcaagtgcagccactgcaaggggatcctctcg 482
>gb|CW071274.1|CW071274 104_323_10591451_116_30454 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591451, DNA
sequence
Length = 633
Score = 58.0 bits (29), Expect = 8e-007
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacncaggannngtgcgcggagtgcgaca 110
||||||||||||||||||||| |||||||||| ||||| |||| ||| ||||||||
Sbjct: 518 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 574
Query: 111 aga 113
|||
Sbjct: 575 aga 577
>gb|CW071276.1|CW071276 104_323_10591452_116_30437 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591452, DNA
sequence
Length = 679
Score = 58.0 bits (29), Expect = 8e-007
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacncaggannngtgcgcggagtgcgaca 110
||||||||||||||||||||| |||||||||| ||||| |||| ||| ||||||||
Sbjct: 516 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 572
Query: 111 aga 113
|||
Sbjct: 573 aga 575
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/49 (83%)
Strand = Plus / Plus
Query: 154 ctaccataagacatgcttcnannnnngccactgcaaagggatcctctcg 202
|||||| |||||||||||| | |||||||||| ||||||||||||
Sbjct: 616 ctaccacaagacatgcttcaagtgcagccactgcaaggggatcctctcg 664
>gb|CW131967.1|CW131967 104_515_11115958_148_34793_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115958, DNA
sequence
Length = 613
Score = 58.0 bits (29), Expect = 8e-007
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacncaggannngtgcgcggagtgcgaca 110
||||||||||||||||||||| |||||||||| ||||| |||| ||| ||||||||
Sbjct: 375 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 431
Query: 111 aga 113
|||
Sbjct: 432 aga 434
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/49 (83%)
Strand = Plus / Plus
Query: 154 ctaccataagacatgcttcnannnnngccactgcaaagggatcctctcg 202
|||||| |||||||||||| | |||||||||| ||||||||||||
Sbjct: 475 ctaccacaagacatgcttcaagtgcagccactgcaaggggatcctctcg 523
>gb|CN140719.1|CN140719 OX1_46_B10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_46_B10_A002 5', mRNA sequence
Length = 544
Score = 58.0 bits (29), Expect = 8e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccg 275
|||||||||| |||| ||||||||||| |||||||||||||
Sbjct: 219 gtactgcaaggcccatttcgagcagctgttcaaggagaccg 259
>gb|CW385134.1|CW385134 fsbb001f068h22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068h22, DNA
sequence
Length = 671
Score = 44.1 bits (22), Expect = 0.012
Identities = 52/65 (80%)
Strand = Plus / Minus
Query: 344 agcaagctatcatctncnttttctggtactcannataannnnncagcttgccagaaaaca 403
||||||||||||||| | || ||||| ||||| |||| |||| |||||||||||
Sbjct: 534 agcaagctatcatctgcattctctggaactcaagataaatgcgcagcctgccagaaaacc 475
Query: 404 gtgta 408
|||||
Sbjct: 474 gtgta 470
>gb|CW109957.1|CW109957 104_482_11103418_116_34510_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103418, DNA
sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.18
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
|||||||||||| ||||||| |||||| |||| ||||| |||||||
Sbjct: 100 tgtactgcaagatccacttcaggcagctgttcatggagaaggggagct 147
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,340
Number of Sequences: 832831
Number of extensions: 64340
Number of successful extensions: 18320
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18241
Number of HSP's gapped (non-prelim): 66
length of query: 487
length of database: 491,359,669
effective HSP length: 19
effective length of query: 468
effective length of database: 475,535,880
effective search space: 222550791840
effective search space used: 222550791840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)