BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ23f06.xg.2.1
(683 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN138559.1|CN138559 OX1_64_B06.g1_A002 Oxidatively-stres... 979 0.0
gb|CX610292.1|CX610292 ANR1_17_F05.g1_A002 Anaerobic roots ... 979 0.0
gb|CN133194.1|CN133194 OX1_10_E12.g1_A002 Oxidatively-stres... 971 0.0
gb|CN147054.1|CN147054 WOUND1_46_F06.g1_A002 Wounded leaves... 971 0.0
gb|CN125348.1|CN125348 RHOH1_10_C02.g1_A002 Acid- and alkal... 961 0.0
gb|CN143855.1|CN143855 WOUND1_18_F12.g1_A002 Wounded leaves... 959 0.0
gb|CD221150.1|CD221150 CCC1_73_G10.g1_A007 Callus culture/c... 948 0.0
gb|CN151636.1|CN151636 WOUND1_76_D10.g1_A002 Wounded leaves... 926 0.0
gb|CD229015.1|CD229015 CCC1_11_B11.g1_A007 Callus culture/c... 898 0.0
gb|BE918894.1|BE918894 FM1_1_E05.b1_A003 Floral-Induced Mer... 811 0.0
gb|CD204242.1|CD204242 HS1_4_C06.g1_A012 Heat-shocked seedl... 805 0.0
gb|AW287541.2|AW287541 LG1_242_D02.b1_A002 Light Grown 1 (L... 535 e-150
gb|BF657447.1|BF657447 OV2_24_C06.b1_A002 Ovary 2 (OV2) Sor... 444 e-123
gb|CN138473.1|CN138473 OX1_64_B06.b1_A002 Oxidatively-stres... 176 2e-042
gb|CF433732.1|CF433732 NIT1_28_D12.g1_A002 Nitrogen-deficie... 155 6e-036
gb|CN147002.1|CN147002 WOUND1_46_F06.b1_A002 Wounded leaves... 153 3e-035
gb|CW326769.1|CW326769 104_822_11478392_148_35969_028 Sorgh... 137 1e-030
gb|CW471643.1|CW471643 fsbb001f225l01k0 Sorghum methylation... 137 1e-030
gb|CW492663.1|CW492663 fsbb001f283a21k0 Sorghum methylation... 137 1e-030
gb|CW497705.1|CW497705 fsbb001f290j13k0 Sorghum methylation... 137 1e-030
gb|CX610206.1|CX610206 ANR1_17_F05.b1_A002 Anaerobic roots ... 121 9e-026
gb|CN133114.1|CN133114 OX1_10_E12.b1_A002 Oxidatively-stres... 109 3e-022
gb|BE918701.1|BE918701 FM1_1_E05.g1_A003 Floral-Induced Mer... 94 2e-017
gb|CN143769.1|CN143769 WOUND1_18_F12.b1_A002 Wounded leaves... 72 7e-011
gb|CW169666.1|CW169666 104_579_11154792_148_36501_084 Sorgh... 56 4e-006
gb|AW563938.1|AW563938 LG1_275_H03.b1_A002 Light Grown 1 (L... 48 0.001
gb|CF428932.1|CF428932 PH1_18_E11.g1_A002 Phosphorous-defic... 48 0.001
gb|CF431599.1|CF431599 NIT1_8_G05.g1_A002 Nitrogen-deficien... 48 0.001
gb|CF432039.1|CF432039 NIT1_16_B07.g1_A002 Nitrogen-deficie... 48 0.001
gb|CN125224.1|CN125224 RHOH1_9_F12.g1_A002 Acid- and alkali... 48 0.001
gb|CN128070.1|CN128070 RHOH1_26_G06.g1_A002 Acid- and alkal... 48 0.001
gb|CN130313.1|CN130313 RHOH1_40_D10.g1_A002 Acid- and alkal... 48 0.001
gb|CX621222.1|CX621222 GABR1_56_F11.g1_A002 GA- or brassino... 48 0.001
gb|CW177547.1|CW177547 104_590_11159086_116_36597_081 Sorgh... 44 0.017
>gb|CN138559.1|CN138559 OX1_64_B06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_64_B06_A002 5', mRNA sequence
Length = 839
Score = 979 bits (494), Expect = 0.0
Identities = 610/657 (92%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 86
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgat 146
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct: 87 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 146
Query: 147 aaacatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggc 206
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 147 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggc 206
Query: 207 tatgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaa 266
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 207 tatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaagaa 266
Query: 267 agctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagagaagc 326
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 267 agctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagc 326
Query: 327 tctaagtggtgacactatggatctgagagcagccactgatattatatgttccaggacacc 386
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 327 tctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacacc 386
Query: 387 atcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttgagca 446
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 387 atcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagca 446
Query: 447 tgacattggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggat 506
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 447 tgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtggggat 506
Query: 507 tccacgctacgaaggtcctgaggttgatcctaccattgngacacatgatgcaaaggattt 566
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 507 tccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggattt 566
Query: 567 gtacaaagctggtgagnaaaggctcggtacggatgagnnnnnntnnatnngcgnnttcac 626
|||||||||||||||| ||||||| |||||||||||| | || | | |||||
Sbjct: 567 gtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttcac 626
Query: 627 tgnacgcngctgggcacacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
|| |||| | ||||||||| ||||||||| || ||||| ||||||||||||||||
Sbjct: 627 tgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatga 683
>gb|CX610292.1|CX610292 ANR1_17_F05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_17_F05_A002 5', mRNA sequence
Length = 741
Score = 979 bits (494), Expect = 0.0
Identities = 610/657 (92%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 81 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 140
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgat 146
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct: 141 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 200
Query: 147 aaacatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggc 206
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 201 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggc 260
Query: 207 tatgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaa 266
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 261 tatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaagaa 320
Query: 267 agctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagagaagc 326
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 321 agctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagc 380
Query: 327 tctaagtggtgacactatggatctgagagcagccactgatattatatgttccaggacacc 386
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacacc 440
Query: 387 atcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttgagca 446
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 atcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagca 500
Query: 447 tgacattggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggat 506
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtggggat 560
Query: 507 tccacgctacgaaggtcctgaggttgatcctaccattgngacacatgatgcaaaggattt 566
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 tccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggattt 620
Query: 567 gtacaaagctggtgagnaaaggctcggtacggatgagnnnnnntnnatnngcgnnttcac 626
|||||||||||||||| ||||||| |||||||||||| | || | | |||||
Sbjct: 621 gtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttcac 680
Query: 627 tgnacgcngctgggcacacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
|| |||| | ||||||||| ||||||||| || ||||| ||||||||||||||||
Sbjct: 681 tgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatga 737
>gb|CN133194.1|CN133194 OX1_10_E12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_10_E12_A002 5', mRNA sequence
Length = 767
Score = 971 bits (490), Expect = 0.0
Identities = 609/657 (92%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
|||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||
Sbjct: 63 gcagcgattgccggcgatggtgagcctcaccctgccgccggcgcccccgaacccacgcca 122
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgat 146
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct: 123 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 182
Query: 147 aaacatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggc 206
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 183 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggc 242
Query: 207 tatgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaa 266
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 243 tatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaagaa 302
Query: 267 agctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagagaagc 326
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 303 agctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagc 362
Query: 327 tctaagtggtgacactatggatctgagagcagccactgatattatatgttccaggacacc 386
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 363 tctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacacc 422
Query: 387 atcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttgagca 446
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 423 atcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagca 482
Query: 447 tgacattggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggat 506
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 483 tgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtggggat 542
Query: 507 tccacgctacgaaggtcctgaggttgatcctaccattgngacacatgatgcaaaggattt 566
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 543 tccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggattt 602
Query: 567 gtacaaagctggtgagnaaaggctcggtacggatgagnnnnnntnnatnngcgnnttcac 626
|||||||||||||||| ||||||| |||||||||||| | || | | |||||
Sbjct: 603 gtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttcac 662
Query: 627 tgnacgcngctgggcacacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
|| |||| | ||||||||| ||||||||| || ||||| ||||||||||||||||
Sbjct: 663 tgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatga 719
>gb|CN147054.1|CN147054 WOUND1_46_F06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_46_F06_A002 5', mRNA sequence
Length = 792
Score = 971 bits (490), Expect = 0.0
Identities = 609/657 (92%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
|||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||
Sbjct: 113 gcagcgattgccggcgatggcgagcctcgccctgccgccggcgcccccgaacccacgcca 172
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgat 146
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct: 173 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 232
Query: 147 aaacatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggc 206
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 233 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggc 292
Query: 207 tatgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaa 266
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 293 tatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaagaa 352
Query: 267 agctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagagaagc 326
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 353 agctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagc 412
Query: 327 tctaagtggtgacactatggatctgagagcagccactgatattatatgttccaggacacc 386
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 413 tctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacacc 472
Query: 387 atcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttgagca 446
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 473 atcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagca 532
Query: 447 tgacattggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggat 506
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 533 tgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtggggat 592
Query: 507 tccacgctacgaaggtcctgaggttgatcctaccattgngacacatgatgcaaaggattt 566
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 593 tccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggattt 652
Query: 567 gtacaaagctggtgagnaaaggctcggtacggatgagnnnnnntnnatnngcgnnttcac 626
|||||||||||||||| ||||||| |||||||||||| | || | | |||||
Sbjct: 653 gtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttcac 712
Query: 627 tgnacgcngctgggcacacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
|| |||| | ||||||||| ||||||||| || ||||| ||||||||||||||||
Sbjct: 713 tgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatga 769
>gb|CN125348.1|CN125348 RHOH1_10_C02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_10_C02_A002 5', mRNA sequence
Length = 842
Score = 961 bits (485), Expect = 0.0
Identities = 609/657 (92%), Gaps = 1/657 (0%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 63 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 122
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgat 146
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct: 123 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 182
Query: 147 aaacatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggc 206
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 183 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggc 242
Query: 207 tatgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaa 266
|||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||
Sbjct: 243 tatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaacacaagaa 302
Query: 267 agctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagagaagc 326
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 303 agctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagc 362
Query: 327 tctaagtggtgacactatggatctgagagcagccactgatattatatgttccaggacacc 386
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 363 tctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacacc 422
Query: 387 atcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttgagca 446
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 423 atcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagca 482
Query: 447 tgacattggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggat 506
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 483 tgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtggggat 542
Query: 507 tccacgctacgaaggtcctgaggttgatcctaccattgngacacatgatgcaaaggattt 566
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 543 tccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggattt 602
Query: 567 gtacaaagctggtgagnaaaggctcggtacggatgagnnnnnntnnatnngcgnnttcac 626
|||||||||||||||| ||||||| |||||||||||| | || | | |||||
Sbjct: 603 gtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttcac 662
Query: 627 tgnacgcngctgggcacacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
|| |||| | ||||||||| ||||||||| || ||||| ||||||||||||||||
Sbjct: 663 tgaacgcagttgggcacac-tggcatctgtttcttctgcttaccatcatatgtatga 718
>gb|CN143855.1|CN143855 WOUND1_18_F12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_18_F12_A002 5', mRNA sequence
Length = 699
Score = 959 bits (484), Expect = 0.0
Identities = 606/655 (92%)
Strand = Plus / Plus
Query: 29 agcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggcagg 88
||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct: 38 agcgattgccggcgatggcgagcctcaccctgccgccggtgcccccgaacccacgccagg 97
Query: 89 acgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgataa 148
|||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 98 acgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgataa 157
Query: 149 acatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggcta 208
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 158 acatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggcta 217
Query: 209 tgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaaag 268
|||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct: 218 tgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaagaaag 277
Query: 269 ctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagagaagctc 328
|||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 278 ctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagctc 337
Query: 329 taagtggtgacactatggatctgagagcagccactgatattatatgttccaggacaccat 388
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 338 taagcggtgacactatggatctgagagcagccactgagattatatgttccaggacaccat 397
Query: 389 cacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttgagcatg 448
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 398 cacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagcatg 457
Query: 449 acattggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggattc 508
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 458 acattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtggggattc 517
Query: 509 cacgctacgaaggtcctgaggttgatcctaccattgngacacatgatgcaaaggatttgt 568
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 518 cacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggatttgt 577
Query: 569 acaaagctggtgagnaaaggctcggtacggatgagnnnnnntnnatnngcgnnttcactg 628
|||||||||||||| ||||||| ||||| |||||| | || | | |||||||
Sbjct: 578 acaaagctggtgagaaaaggctgggtactgatgagaaaacctttatccgtgttttcactg 637
Query: 629 nacgcngctgggcacacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
|||| | ||||||||| ||||||||| || ||||| ||||||||||||||||
Sbjct: 638 aacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatga 692
>gb|CD221150.1|CD221150 CCC1_73_G10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_G10_A007 5', mRNA sequence
Length = 757
Score = 948 bits (478), Expect = 0.0
Identities = 607/657 (92%), Gaps = 1/657 (0%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 94 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 153
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgat 146
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct: 154 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 213
Query: 147 aaacatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggc 206
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 214 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggc 273
Query: 207 tatgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaa 266
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 274 tatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaagaa 333
Query: 267 agctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagagaagc 326
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 334 agctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagc 393
Query: 327 tctaagtggtgacactatggatctgagagcagccactgatattatatgttccaggacacc 386
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 394 tctaagcggtgacactatggatctgagagcagccactgagataatatgttccaggacacc 453
Query: 387 atcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttgagca 446
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 454 atcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagca 513
Query: 447 tgacattggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggat 506
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 514 tgacactggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtggggat 573
Query: 507 tccacgctacgaaggtcctgaggttgatcctaccattgngacacatgatgcaaaggattt 566
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 574 tccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggattt 633
Query: 567 gtacaaagctggtgagnaaaggctcggtacggatgagnnnnnntnnatnngcgnnttcac 626
|||||||||||||||| ||||||| |||||||||||| | || | | |||||
Sbjct: 634 gtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttcac 693
Query: 627 tgnacgcngctgggcacacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
|| |||| | ||||||||| ||||||||| || ||||| | ||||||||||||||
Sbjct: 694 tgaacgcagttgggcacacttggcatctgtttcttctgctta-catcatatgtatga 749
>gb|CN151636.1|CN151636 WOUND1_76_D10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_76_D10_A002 5', mRNA sequence
Length = 682
Score = 926 bits (467), Expect = 0.0
Identities = 548/577 (94%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 62 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 121
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgat 146
|||||||||||||||||| ||| |||||||||||||||||||||| |||||| |||||||
Sbjct: 122 ggacgccatcgacctccacaagaccttcaaagggtttggctgtgatagtacagcagtgat 181
Query: 147 aaacatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggc 206
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 182 gaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggc 241
Query: 207 tatgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaa 266
|||||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||
Sbjct: 242 tatgtatcatgaggaactcttccatcgtagttcatctgaactcagtggaaaccacaagaa 301
Query: 267 agctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagagaagc 326
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 302 agctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagc 361
Query: 327 tctaagtggtgacactatggatctgagagcagccactgatattatatgttccaggacacc 386
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 362 tctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacacc 421
Query: 387 atcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttgagca 446
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 422 atcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagca 481
Query: 447 tgacattggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggat 506
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 482 tgacattggtcaccacacatctggcgatcaccaaaagcttttacttgcctatgtggggat 541
Query: 507 tccacgctacgaaggtcctgaggttgatcctaccattgngacacatgatgcaaaggattt 566
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 542 tccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggattt 601
Query: 567 gtacaaagctggtgagnaaaggctcggtacggatgag 603
|||||||||||||||| ||||||| ||||||||||||
Sbjct: 602 gtacaaagctggtgagaaaaggctgggtacggatgag 638
>gb|CD229015.1|CD229015 CCC1_11_B11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_11_B11_A007 5', mRNA sequence
Length = 658
Score = 898 bits (453), Expect = 0.0
Identities = 517/540 (95%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 119 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 178
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgat 146
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct: 179 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 238
Query: 147 aaacatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggc 206
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 239 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggc 298
Query: 207 tatgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaa 266
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 299 tatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaagaa 358
Query: 267 agctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagagaagc 326
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 359 agctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagc 418
Query: 327 tctaagtggtgacactatggatctgagagcagccactgatattatatgttccaggacacc 386
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 419 tctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacacc 478
Query: 387 atcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttgagca 446
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 479 atcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagca 538
Query: 447 tgacattggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggat 506
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 539 tgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtggggat 598
Query: 507 tccacgctacgaaggtcctgaggttgatcctaccattgngacacatgatgcaaaggattt 566
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 599 tccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggattt 658
>gb|BE918894.1|BE918894 FM1_1_E05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 536
Score = 811 bits (409), Expect = 0.0
Identities = 468/489 (95%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 44 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 103
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgat 146
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct: 104 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 163
Query: 147 aaacatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggc 206
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 164 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggc 223
Query: 207 tatgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaa 266
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 224 tatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaagaa 283
Query: 267 agctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagagaagc 326
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 284 agctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagc 343
Query: 327 tctaagtggtgacactatggatctgagagcagccactgatattatatgttccaggacacc 386
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 344 tctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacacc 403
Query: 387 atcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttgagca 446
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 404 atcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagca 463
Query: 447 tgacattggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggat 506
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 464 tgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtggggat 523
Query: 507 tccacgcta 515
|||||||||
Sbjct: 524 tccacgcta 532
>gb|CD204242.1|CD204242 HS1_4_C06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_4_C06_A012 5', mRNA sequence
Length = 552
Score = 805 bits (406), Expect = 0.0
Identities = 471/494 (95%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 59 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 118
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgat 146
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct: 119 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 178
Query: 147 aaacatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggc 206
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 179 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggc 238
Query: 207 tatgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaa 266
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 239 tatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaagaa 298
Query: 267 agctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagagaagc 326
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 299 agctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagc 358
Query: 327 tctaagtggtgacactatggatctgagagcagccactgatattatatgttccaggacacc 386
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 359 tctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacacc 418
Query: 387 atcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttgagca 446
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 419 atcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagca 478
Query: 447 tgacattggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggat 506
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 479 tgacattggtcaccacacatctggcgatcaccagaagcttttactcgcctatgtggggat 538
Query: 507 tccacgctacgaag 520
||||||||| ||||
Sbjct: 539 tccacgctatgaag 552
>gb|AW287541.2|AW287541 LG1_242_D02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 412
Score = 535 bits (270), Expect = e-150
Identities = 325/344 (94%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 69 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 128
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgat 146
|||||||||||||| ||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct: 129 ggacgccatcgacccccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 188
Query: 147 aaacatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggc 206
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 189 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggc 248
Query: 207 tatgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaa 266
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 249 tatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaagaa 308
Query: 267 agctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagagaagc 326
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 309 agctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagc 368
Query: 327 tctaagtggtgacactatggatctgagagcagccactgatatta 370
|||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 369 tctaagcggtgacactatggatctgagagcagccactgagatta 412
>gb|BF657447.1|BF657447 OV2_24_C06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 339
Score = 444 bits (224), Expect = e-123
Identities = 266/280 (95%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 57 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 116
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgat 146
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct: 117 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 176
Query: 147 aaacatacttactcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggc 206
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 177 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacagggc 236
Query: 207 tatgtatcatgaggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaa 266
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 237 tatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaagaa 296
Query: 267 agctatgttgctgtggattcttgatcctgctggacgtgat 306
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 297 agctatgtcgctgtggattcttgatcctgctggacgtgat 336
>gb|CN138473.1|CN138473 OX1_64_B06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_64_B06_A002 3', mRNA sequence
Length = 768
Score = 176 bits (89), Expect = 2e-042
Identities = 146/172 (84%)
Strand = Plus / Plus
Query: 512 gctacgaaggtcctgaggttgatcctaccattgngacacatgatgcaaaggatttgtaca 571
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggatttgtaca 60
Query: 572 aagctggtgagnaaaggctcggtacggatgagnnnnnntnnatnngcgnnttcactgnac 631
||||||||||| ||||||| |||||||||||| | || | | ||||||| ||
Sbjct: 61 aagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttcactgaac 120
Query: 632 gcngctgggcacacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
|| | ||||||||| ||||||||| || ||||| ||||||||||||||||
Sbjct: 121 gcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatga 172
>gb|CF433732.1|CF433732 NIT1_28_D12.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_D12_A002 5', mRNA sequence
Length = 679
Score = 155 bits (78), Expect = 6e-036
Identities = 132/157 (84%)
Strand = Plus / Minus
Query: 527 aggttgatcctaccattgngacacatgatgcaaaggatttgtacaaagctggtgagnaaa 586
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 679 aggttgatcctaccattgtgacacatgatgcaaaggatttgtacaaagctggtgagaaaa 620
Query: 587 ggctcggtacggatgagnnnnnntnnatnngcgnnttcactgnacgcngctgggcacacn 646
|||| |||||||||||| | || | | ||||||| |||| | |||||||||
Sbjct: 619 ggctgggtacggatgagaagacctttatccgtgttttcactgaacgcagttgggcacact 560
Query: 647 tggcatctgnntcgtctgcnnaccatcatatgtatga 683
||||||||| || ||||| ||||||||||||||||
Sbjct: 559 tggcatctgtttcttctgcttaccatcatatgtatga 523
>gb|CN147002.1|CN147002 WOUND1_46_F06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_46_F06_A002 3', mRNA sequence
Length = 754
Score = 153 bits (77), Expect = 3e-035
Identities = 131/156 (83%)
Strand = Plus / Plus
Query: 528 ggttgatcctaccattgngacacatgatgcaaaggatttgtacaaagctggtgagnaaag 587
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 ggttgatcctaccattgtgacacatgatgcaaaggatttgtacaaagctggtgagaaaag 60
Query: 588 gctcggtacggatgagnnnnnntnnatnngcgnnttcactgnacgcngctgggcacacnt 647
||| |||||||||||| | || | | ||||||| |||| | ||||||||| |
Sbjct: 61 gctgggtacggatgagaagacctttatccgtgttttcactgaacgcagttgggcacactt 120
Query: 648 ggcatctgnntcgtctgcnnaccatcatatgtatga 683
|||||||| || ||||| ||||||||||||||||
Sbjct: 121 ggcatctgtttcttctgcttaccatcatatgtatga 156
>gb|CW326769.1|CW326769 104_822_11478392_148_35969_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478392, DNA
sequence
Length = 609
Score = 137 bits (69), Expect = 1e-030
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 58 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 117
Query: 87 ggacgccatcgacctccaaaaggccttcaaagg 119
|||||||||||||||||| ||||||||||||||
Sbjct: 118 ggacgccatcgacctccacaaggccttcaaagg 150
>gb|CW471643.1|CW471643 fsbb001f225l01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f225l01, DNA
sequence
Length = 363
Score = 137 bits (69), Expect = 1e-030
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 241 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 300
Query: 87 ggacgccatcgacctccaaaaggccttcaaagg 119
|||||||||||||||||| ||||||||||||||
Sbjct: 301 ggacgccatcgacctccacaaggccttcaaagg 333
>gb|CW492663.1|CW492663 fsbb001f283a21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f283a21, DNA
sequence
Length = 466
Score = 137 bits (69), Expect = 1e-030
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 210 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 269
Query: 87 ggacgccatcgacctccaaaaggccttcaaagg 119
|||||||||||||||||| ||||||||||||||
Sbjct: 270 ggacgccatcgacctccacaaggccttcaaagg 302
>gb|CW497705.1|CW497705 fsbb001f290j13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f290j13, DNA
sequence
Length = 661
Score = 137 bits (69), Expect = 1e-030
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggca 86
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 503 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 562
Query: 87 ggacgccatcgacctccaaaaggccttcaaagg 119
|||||||||||||||||| ||||||||||||||
Sbjct: 563 ggacgccatcgacctccacaaggccttcaaagg 595
>gb|CX610206.1|CX610206 ANR1_17_F05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_17_F05_A002 3', mRNA sequence
Length = 777
Score = 121 bits (61), Expect = 9e-026
Identities = 113/137 (82%)
Strand = Plus / Plus
Query: 547 acacatgatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggatgagnnn 606
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 1 acacatgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggatgagaag 60
Query: 607 nnntnnatnngcgnnttcactgnacgcngctgggcacacntggcatctgnntcgtctgcn 666
| || | | ||||||| |||| | ||||||||| ||||||||| || |||||
Sbjct: 61 acctttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgct 120
Query: 667 naccatcatatgtatga 683
||||||||||||||||
Sbjct: 121 taccatcatatgtatga 137
>gb|CN133114.1|CN133114 OX1_10_E12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_10_E12_A002 3', mRNA sequence
Length = 735
Score = 109 bits (55), Expect = 3e-022
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 553 gatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggatgagnnnnnntnn 612
|||||||||||||||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 1 gatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggatgagaagaccttt 60
Query: 613 atnngcgnnttcactgnacgcngctgggcacacntggcatctgnntcgtctgcnnaccat 672
|| | | ||||||| |||| | ||||||||| ||||||||| || ||||| |||||
Sbjct: 61 atccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttaccat 120
Query: 673 catatgtatga 683
|||||||||||
Sbjct: 121 catatgtatga 131
>gb|BE918701.1|BE918701 FM1_1_E05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 93.7 bits (47), Expect = 2e-017
Identities = 99/123 (80%)
Strand = Plus / Plus
Query: 561 ggatttgtacaaagctggtgagnaaaggctcggtacggatgagnnnnnntnnatnngcgn 620
|||||||||||||||||||||| ||||||| |||||||||||| | || | |
Sbjct: 1 ggatttgtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgt 60
Query: 621 nttcactgnacgcngctgggcacacntggcatctgnntcgtctgcnnaccatcatatgta 680
||||||| |||| | ||||||||| ||||||||| || ||||| |||||||||||||
Sbjct: 61 tttcactgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgta 120
Query: 681 tga 683
|||
Sbjct: 121 tga 123
>gb|CN143769.1|CN143769 WOUND1_18_F12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_18_F12_A002 3', mRNA sequence
Length = 715
Score = 71.9 bits (36), Expect = 7e-011
Identities = 88/112 (78%)
Strand = Plus / Plus
Query: 572 aagctggtgagnaaaggctcggtacggatgagnnnnnntnnatnngcgnnttcactgnac 631
||||||||||| ||||||| |||||||||||| | || | | ||||||| ||
Sbjct: 1 aagctggtgagaaaaggctgggtacggatgagaaaacctttatccgtgttttcactgaac 60
Query: 632 gcngctgggcacacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
|| | ||||||||| ||||||||| || ||||| ||||||||||||||||
Sbjct: 61 gcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatga 112
>gb|CW169666.1|CW169666 104_579_11154792_148_36501_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154792, DNA
sequence
Length = 703
Score = 56.0 bits (28), Expect = 4e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 117 agggtttggctgtgacagtacaacagtgataaacat 152
||||||||||||||| |||||| |||||||||||||
Sbjct: 36 agggtttggctgtgatagtacagcagtgataaacat 1
>gb|AW563938.1|AW563938 LG1_275_H03.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 550
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 ccacggcaggacgccatcgacctccaaaaggc 110
|||||||||||||| ||||||||||| |||||
Sbjct: 105 ccacggcaggacgcgatcgacctccacaaggc 136
>gb|CF428932.1|CF428932 PH1_18_E11.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_18_E11_A002 5', mRNA sequence
Length = 776
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 ccacggcaggacgccatcgacctccaaaaggc 110
|||||||||||||| ||||||||||| |||||
Sbjct: 153 ccacggcaggacgcgatcgacctccacaaggc 184
>gb|CF431599.1|CF431599 NIT1_8_G05.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_8_G05_A002 5', mRNA sequence
Length = 407
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 ccacggcaggacgccatcgacctccaaaaggc 110
|||||||||||||| ||||||||||| |||||
Sbjct: 129 ccacggcaggacgcgatcgacctccacaaggc 160
>gb|CF432039.1|CF432039 NIT1_16_B07.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_16_B07_A002 5', mRNA sequence
Length = 365
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 ccacggcaggacgccatcgacctccaaaaggc 110
|||||||||||||| ||||||||||| |||||
Sbjct: 118 ccacggcaggacgcgatcgacctccacaaggc 149
>gb|CN125224.1|CN125224 RHOH1_9_F12.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_9_F12_A002 5', mRNA sequence
Length = 770
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 ccacggcaggacgccatcgacctccaaaaggc 110
|||||||||||||| ||||||||||| |||||
Sbjct: 119 ccacggcaggacgcgatcgacctccacaaggc 150
>gb|CN128070.1|CN128070 RHOH1_26_G06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_26_G06_A002 5', mRNA sequence
Length = 579
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 ccacggcaggacgccatcgacctccaaaaggc 110
|||||||||||||| ||||||||||| |||||
Sbjct: 119 ccacggcaggacgcgatcgacctccacaaggc 150
>gb|CN130313.1|CN130313 RHOH1_40_D10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_D10_A002 5', mRNA sequence
Length = 602
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 ccacggcaggacgccatcgacctccaaaaggc 110
|||||||||||||| ||||||||||| |||||
Sbjct: 138 ccacggcaggacgcgatcgacctccacaaggc 169
>gb|CX621222.1|CX621222 GABR1_56_F11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_56_F11_A002 5', mRNA sequence
Length = 747
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 ccacggcaggacgccatcgacctccaaaaggc 110
|||||||||||||| ||||||||||| |||||
Sbjct: 134 ccacggcaggacgcgatcgacctccacaaggc 165
>gb|CW177547.1|CW177547 104_590_11159086_116_36597_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159086, DNA
sequence
Length = 663
Score = 44.1 bits (22), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 472 gatcaccagnagcttttacttgcctatgt 500
||||||||| |||||||||||| ||||||
Sbjct: 602 gatcaccagtagcttttacttgtctatgt 630
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 153,342
Number of Sequences: 832831
Number of extensions: 153342
Number of successful extensions: 45168
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45079
Number of HSP's gapped (non-prelim): 56
length of query: 683
length of database: 491,359,669
effective HSP length: 19
effective length of query: 664
effective length of database: 475,535,880
effective search space: 315755824320
effective search space used: 315755824320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)