BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBE1h10.xg.2.1
(463 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX607675.1|CX607675 ANR1_30_C08.b1_A002 Anaerobic roots ... 236 1e-060
gb|CX618736.1|CX618736 GABR1_41_H05.b1_A002 GA- or brassino... 222 2e-056
gb|CF071235.1|CF071235 FE1_16_A06.b1_A002 Iron-deficient se... 218 3e-055
gb|CD222171.1|CD222171 CCC1_2_E04.b1_A007 Callus culture/ce... 210 8e-053
gb|CD227690.1|CD227690 CCC1_53_F01.b1_A007 Callus culture/c... 204 5e-051
gb|CD227870.1|CD227870 CCC1_56_A03.b1_A007 Callus culture/c... 204 5e-051
gb|CD228008.1|CD228008 CCC1_5_A09.b1_A007 Callus culture/ce... 202 2e-050
gb|BE595751.1|BE595751 PI1_54_D08.g1_A002 Pathogen induced ... 170 7e-041
gb|CD204160.1|CD204160 HS1_4_A06.b1_A012 Heat-shocked seedl... 165 4e-039
gb|CD204280.1|CD204280 HS1_7_F03.b1_A012 Heat-shocked seedl... 165 4e-039
gb|CF770834.1|CF770834 DSBF1_10_C07.g1_A010 Drought-stresse... 165 4e-039
gb|CD222173.1|CD222173 CCC1_2_D02.b1_A007 Callus culture/ce... 149 3e-034
gb|CW107381.1|CW107381 104_477_11096552_148_34471_022 Sorgh... 135 4e-030
gb|CW269966.1|CW269966 104_741_11402135_116_35322_090 Sorgh... 135 4e-030
gb|CW300032.1|CW300032 104_783_11463432_148_36247_092 Sorgh... 135 4e-030
gb|CN135656.1|CN135656 OX1_38_E07.b1_A002 Oxidatively-stres... 135 4e-030
gb|CN127791.1|CN127791 RHOH1_25_C09.b1_A002 Acid- and alkal... 133 2e-029
gb|BG559635.1|BG559635 RHIZ2_71_F04.g1_A003 Rhizome2 (RHIZ2... 123 2e-026
gb|BG465260.1|BG465260 EM1_74_A05.g1_A002 Embryo 1 (EM1) So... 117 9e-025
gb|CW046110.1|CW046110 104_283_10509970_114_30137 Sorghum m... 100 2e-019
gb|CW107380.1|CW107380 104_477_11096552_116_34475_022 Sorgh... 100 2e-019
gb|CW225943.1|CW225943 104_663_11204625_148_37212_035 Sorgh... 100 2e-019
gb|CW269967.1|CW269967 104_741_11402135_148_35326_090 Sorgh... 100 2e-019
gb|CW415441.1|CW415441 fsbb001f115i18f0 Sorghum methylation... 100 2e-019
gb|AI724130.1|AI724130 RHIZ1_7_B04.y2_A001 Rhizome1 (RHIZ1)... 88 8e-016
gb|CL181798.1|CL181798 104_392_10896983_148_31925_359 Sorgh... 78 8e-013
gb|CW306883.1|CW306883 104_792_11467079_148_35713_084 Sorgh... 78 8e-013
gb|CW498600.1|CW498600 fsbb001f291o14k0 Sorghum methylation... 78 8e-013
gb|CX611907.1|CX611907 ANR1_27_H10.b1_A002 Anaerobic roots ... 78 8e-013
gb|CW065110.1|CW065110 104_311_10522954_115_30121 Sorghum m... 74 1e-011
gb|CW151042.1|CW151042 104_551_11143730_148_36309_003 Sorgh... 74 1e-011
gb|CW400389.1|CW400389 fsbb001f090k19k0 Sorghum methylation... 74 1e-011
gb|CW231621.1|CW231621 104_681_11211220_116_37346_016 Sorgh... 68 8e-010
gb|CW231622.1|CW231622 104_681_11211220_148_37350_016 Sorgh... 68 8e-010
gb|CW457046.1|CW457046 fsbb001f202l01k0 Sorghum methylation... 68 8e-010
gb|CW498974.1|CW498974 fsbb001f293i01k0 Sorghum methylation... 68 8e-010
gb|CW394783.1|CW394783 fsbb001f082i17k0 Sorghum methylation... 54 1e-005
gb|CF485887.1|CF485887 POL1_34_G06.b1_A002 Pollen Sorghum b... 54 1e-005
gb|CW023223.1|CW023223 104_163_10432326_1_30001 Sorghum met... 52 5e-005
gb|CW022072.1|CW022072 104_161_10431625_5_30007 Sorghum met... 46 0.003
gb|CW262736.1|CW262736 104_730_11230244_116_35224_072 Sorgh... 46 0.003
gb|CW262737.1|CW262737 104_730_11230244_148_35220_072 Sorgh... 46 0.003
gb|CW400388.1|CW400388 fsbb001f090k19f0 Sorghum methylation... 46 0.003
gb|CW457045.1|CW457045 fsbb001f202l01f0 Sorghum methylation... 46 0.003
gb|CW498973.1|CW498973 fsbb001f293i01f0 Sorghum methylation... 46 0.003
gb|CL181797.1|CL181797 104_392_10896983_116_31926_359 Sorgh... 44 0.011
gb|CW042642.1|CW042642 104_276_10507205_114_30482 Sorghum m... 44 0.011
gb|CW050897.1|CW050897 104_291_10514924_115_30196 Sorghum m... 44 0.011
gb|CW065109.1|CW065109 104_311_10522954_114_30122 Sorghum m... 44 0.011
gb|CW385193.1|CW385193 fsbb001f068j07f0 Sorghum methylation... 44 0.011
gb|CW385194.1|CW385194 fsbb001f068j07k0 Sorghum methylation... 44 0.011
gb|CW427480.1|CW427480 fsbb001f139i05k0 Sorghum methylation... 44 0.011
>gb|CX607675.1|CX607675 ANR1_30_C08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_30_C08_A002 3', mRNA sequence
Length = 743
Score = 236 bits (119), Expect = 1e-060
Identities = 278/340 (81%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| |||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 71 ttcttcagagtctccaaggacggctacggcaagcccaaggtgctcatgtgcaccgacccc 130
Query: 98 accaagnnnnctcttagtccggatctgtacaagccgaccttcgnnnncttcgtcgacgcc 157
|||||| | |||||||| |||||||||||||||||||||| |||||||||| |
Sbjct: 131 accaagtcatcgcttagtccagatctgtacaagccgaccttcgccggcttcgtcgacact 190
Query: 158 gacatctcgannnnnnnnatcacccttagaagcttgatcgatcggtccnnngtcgagagc 217
||||| || | || | |||||||||||||||||||||||| |||||||||
Sbjct: 191 gacatttcaagcgggaagattgctcttagaagcttgatcgatcggtccgtggtcgagagc 250
Query: 218 ttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgccgtcggg 277
||||||| ||| | ||| ||||||||||||||||| ||||||||||||||| | ||
Sbjct: 251 ttcggcgaaaaaggaaggacttgcatcctgtcacgggtctacccgtccatcgccattgga 310
Query: 278 aaggacgctcacctctacgttttcaacaacggcgagnnngacgtcacnnnntccggtctg 337
||||| |||||||||||||||||||||||||| || ||||||| || | |||
Sbjct: 311 aaggaggctcacctctacgttttcaacaacggtgacgtggacgtcaaggtgtcaagcctg 370
Query: 338 accgcctgggagatgaagaaaccnctgatgaacggcgcct 377
|| || |||||||||||||| || ||||||||||||||||
Sbjct: 371 acagcatgggagatgaagaagccgctgatgaacggcgcct 410
>gb|CX618736.1|CX618736 GABR1_41_H05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_41_H05_A002 3', mRNA sequence
Length = 642
Score = 222 bits (112), Expect = 2e-056
Identities = 256/313 (81%)
Strand = Plus / Plus
Query: 65 ggcaagcccaaggtgctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctg 124
||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct: 1 ggcaagcccaaggtgctcatgtgcaccgaccccaccaagtcatcgcttagtccagatctg 60
Query: 125 tacaagccgaccttcgnnnncttcgtcgacgccgacatctcgannnnnnnnatcaccctt 184
|||||||||||||||| |||||||||| | ||||| || | || | |||
Sbjct: 61 tacaagccgaccttcgccggcttcgtcgacactgacatttcaagcgggaagattgctctt 120
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
||||||||||||||||||||| |||||||||||||||| ||| | ||| ||||||
Sbjct: 121 agaagcttgatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgcatc 180
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
||||||||||| ||||||||||||||| | || ||||| |||||||||||||||||||||
Sbjct: 181 ctgtcacgggtctacccgtccatcgccattggaaaggaggctcacctctacgttttcaac 240
Query: 305 aacggcgagnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccnctg 364
||||| || ||||||| || | ||||| || |||||||||||||| || |||
Sbjct: 241 aacggtgacgtggacgtcaaggtgtcaagcctgacagcatgggagatgaagaagccgctg 300
Query: 365 atgaacggcgcct 377
|||||||||||||
Sbjct: 301 atgaacggcgcct 313
>gb|CF071235.1|CF071235 FE1_16_A06.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_16_A06_A002 3', mRNA sequence
Length = 658
Score = 218 bits (110), Expect = 3e-055
Identities = 257/315 (81%)
Strand = Plus / Plus
Query: 63 acggcaagcccaaggtgctcatgtgcaccgaccccaccaagnnnnctcttagtccggatc 122
|||||||||||||||||||||||||||||||||||| |||| | |||||||| ||||
Sbjct: 5 acggcaagcccaaggtgctcatgtgcaccgaccccatcaagtcatcgcttagtccagatc 64
Query: 123 tgtacaagccgaccttcgnnnncttcgtcgacgccgacatctcgannnnnnnnatcaccc 182
|||||||||||||||||| |||||||||| | ||||| || | || | |
Sbjct: 65 tgtacaagccgaccttcgccggcttcgtcgacactgacatttcaagcgggaagattgctc 124
Query: 183 ttagaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgca 242
||||||||||||||||||||||| |||||||||||||||| ||| | ||| ||||
Sbjct: 125 ttagaagcttgatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgca 184
Query: 243 tcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttca 302
||||||||||||| ||||||||||||||| | || ||||| |||||||||||||||||||
Sbjct: 185 tcctgtcacgggtctacccgtccatcgccattggaaaggaggctcacctctacgttttca 244
Query: 303 acaacggcgagnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccnc 362
||||||| || ||||||| || | ||||| || |||||||||||||| || |
Sbjct: 245 acaacggtgacgtggacgtcaaggtgtcaagcctgacagcatgggagatgaagaagccgc 304
Query: 363 tgatgaacggcgcct 377
|||||||||||||||
Sbjct: 305 tgatgaacggcgcct 319
>gb|CD222171.1|CD222171 CCC1_2_E04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_2_E04_A007 3', mRNA sequence
Length = 634
Score = 210 bits (106), Expect = 8e-053
Identities = 253/311 (81%)
Strand = Plus / Plus
Query: 67 caagcccaaggtgctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgta 126
||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 1 caagcccaaggtgctcatgtgcaccgaccccaccaagtcatcgcttagtccagatctgta 60
Query: 127 caagccgaccttcgnnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttag 186
|||||||||||||| |||||||||| | ||||| || | || | |||||
Sbjct: 61 caagccgaccttcgccggcttcgtcgacactgacatttcaagcgggaagattgctcttag 120
Query: 187 aagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcct 246
||||||||||||||||||| |||||||||||||||| ||| | ||| ||||||||
Sbjct: 121 aagcttgatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgcatcct 180
Query: 247 gtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaa 306
||||||||| ||||||||||||||| | || ||||| |||||||||||||||||||||||
Sbjct: 181 gtcacgggtctacccgtccatcgccattggaaaggaggctcacctctacgttttcaacaa 240
Query: 307 cggcgagnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccnctgat 366
||| || ||||||| || | |||| || ||||||||||||||||| || ||
Sbjct: 241 cggtgacgtggacgtcaaggtgtcaagcttgacagcgtgggagatgaagaaaccgctcat 300
Query: 367 gaacggcgcct 377
|||||||||||
Sbjct: 301 gaacggcgcct 311
>gb|CD227690.1|CD227690 CCC1_53_F01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_F01_A007 3', mRNA sequence
Length = 656
Score = 204 bits (103), Expect = 5e-051
Identities = 257/316 (81%), Gaps = 1/316 (0%)
Strand = Plus / Plus
Query: 63 acggcaagcccaaggtgctcatgtgcaccgacccca-ccaagnnnnctcttagtccggat 121
|||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||
Sbjct: 13 acggcaagcccaaggtgctcatgtgcaccgaccccaaccaagtcatcgcttagtccagat 72
Query: 122 ctgtacaagccgaccttcgnnnncttcgtcgacgccgacatctcgannnnnnnnatcacc 181
||||||||||||||||||| |||||||||| | ||||| || | || |
Sbjct: 73 ctgtacaagccgaccttcgccggcttcgtcgacactgacatttcaagcgggaagattgct 132
Query: 182 cttagaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgc 241
|||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||
Sbjct: 133 cttagaagcttgatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgc 192
Query: 242 atcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttc 301
|||||||||||||| ||||||||||||||| | || ||||| ||||||||||||||||||
Sbjct: 193 atcctgtcacgggtctacccgtccatcgccattggaaaggaggctcacctctacgttttc 252
Query: 302 aacaacggcgagnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccn 361
|||||||| || ||||||| || | |||| || |||||||||||||||||
Sbjct: 253 aacaacggtgacgtggacgtcaaggtgtcaagcttgacagcgtgggagatgaagaaaccg 312
Query: 362 ctgatgaacggcgcct 377
|| |||||||||||||
Sbjct: 313 ctcatgaacggcgcct 328
>gb|CD227870.1|CD227870 CCC1_56_A03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_A03_A007 3', mRNA sequence
Length = 640
Score = 204 bits (103), Expect = 5e-051
Identities = 257/316 (81%), Gaps = 1/316 (0%)
Strand = Plus / Plus
Query: 63 acggcaagcccaaggtgctcatgtgcaccgaccccacc-aagnnnnctcttagtccggat 121
|||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 5 acggcaagcccaaggtgctcatgtgcaccgaccccacccaagtcatcgcttagtccagat 64
Query: 122 ctgtacaagccgaccttcgnnnncttcgtcgacgccgacatctcgannnnnnnnatcacc 181
||||||||||||||||||| |||||||||| | ||||| || | || |
Sbjct: 65 ctgtacaagccgaccttcgccggcttcgtcgacactgacatttcaagcgggaagattgct 124
Query: 182 cttagaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgc 241
|||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||
Sbjct: 125 cttagaagcttgatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgc 184
Query: 242 atcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttc 301
|||||||||||||| ||||||||||||||| | || ||||| ||||||||||||||||||
Sbjct: 185 atcctgtcacgggtctacccgtccatcgccattggaaaggaggctcacctctacgttttc 244
Query: 302 aacaacggcgagnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccn 361
|||||||| || ||||||| || | |||| || |||||||||||||||||
Sbjct: 245 aacaacggtgacgtggacgtcaaggtgtcaagcttgacagcgtgggagatgaagaaaccg 304
Query: 362 ctgatgaacggcgcct 377
|| |||||||||||||
Sbjct: 305 ctcatgaacggcgcct 320
>gb|CD228008.1|CD228008 CCC1_5_A09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_A09_A007 3', mRNA sequence
Length = 638
Score = 202 bits (102), Expect = 2e-050
Identities = 252/311 (81%)
Strand = Plus / Plus
Query: 67 caagcccaaggtgctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgta 126
||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 1 caagcccaaggtgctcatgtgcaccgaccccaccaagtcatcgcttagtccagatctgta 60
Query: 127 caagccgaccttcgnnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttag 186
|||||||||||||| |||||||||| | ||||| || | || | |||||
Sbjct: 61 caagccgaccttcgccggcttcgtcgacactgacatttcaagcgggaagattgctcttag 120
Query: 187 aagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcct 246
||||||||||||||||||| |||||||||||||||| ||| | ||| ||||||||
Sbjct: 121 aagcttgatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgcatcct 180
Query: 247 gtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaa 306
||||||||| ||||||||||||||| | || ||||| |||||||| ||||||||||||||
Sbjct: 181 gtcacgggtctacccgtccatcgccattggaaaggaggctcacctttacgttttcaacaa 240
Query: 307 cggcgagnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccnctgat 366
||| || ||||||| || | |||| || ||||||||||||||||| || ||
Sbjct: 241 cggtgacgtggacgtcaaggtgtcaagcttgacagcgtgggagatgaagaaaccgctcat 300
Query: 367 gaacggcgcct 377
|||||||||||
Sbjct: 301 gaacggcgcct 311
>gb|BE595751.1|BE595751 PI1_54_D08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 394
Score = 170 bits (86), Expect = 7e-041
Identities = 230/287 (80%)
Strand = Plus / Plus
Query: 91 cgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttcgnnnncttcgt 150
||||||||||||| | |||||||| |||||||||||||||||||||| ||||||
Sbjct: 1 cgaccccaccaagtcatcgcttagtccagatctgtacaagccgaccttcgccggcttcgt 60
Query: 151 cgacgccgacatctcgannnnnnnnatcacccttagaagcttgatcgatcggtccnnngt 210
|||| | ||||| || | || | |||||||||||||||||||||||| ||
Sbjct: 61 cgacactgacatttcaagcgggaagattgctcttagaagcttgatcgatcggtccgtggt 120
Query: 211 cgagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgc 270
|||||||||||||| ||| | ||| ||||||||||||||||| ||||||||||||||
Sbjct: 121 cgagagcttcggcgaaaaaggaaggacttgcatcctgtcacgggtctacccgtccatcgc 180
Query: 271 cgtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtcacnnnntc 330
| | || ||||| |||||||||||||||||||||||||| || ||||||| ||
Sbjct: 181 cattggaaaggaggctcacctctacgttttcaacaacggtgacgtggacgtcaaggtgtc 240
Query: 331 cggtctgaccgcctgggagatgaagaaaccnctgatgaacggcgcct 377
| ||||| || |||||||||||||| || ||||||||||||||||
Sbjct: 241 aagcctgacagcatgggagatgaagaagccgctgatgaacggcgcct 287
>gb|CD204160.1|CD204160 HS1_4_A06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_4_A06_A012 3', mRNA sequence
Length = 542
Score = 165 bits (83), Expect = 4e-039
Identities = 165/196 (84%)
Strand = Plus / Plus
Query: 182 cttagaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgc 241
|||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||
Sbjct: 16 cttagaagcttgatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgc 75
Query: 242 atcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttc 301
|||||||||||||| ||||||||||||||| | || ||||| ||||||||||||||||||
Sbjct: 76 atcctgtcacgggtctacccgtccatcgccattggaaaggaggctcacctctacgttttc 135
Query: 302 aacaacggcgagnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccn 361
|||||||| ||| ||||||| || | ||||| || |||||||||||||| ||
Sbjct: 136 aacaacggtgaggtggacgtcaaggtgtcaagcctgacagcatgggagatgaagaagccg 195
Query: 362 ctgatgaacggcgcct 377
||||||||||||||||
Sbjct: 196 ctgatgaacggcgcct 211
>gb|CD204280.1|CD204280 HS1_7_F03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_7_F03_A012 3', mRNA sequence
Length = 552
Score = 165 bits (83), Expect = 4e-039
Identities = 165/196 (84%)
Strand = Plus / Plus
Query: 182 cttagaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgc 241
|||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||
Sbjct: 24 cttagaagcttgatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgc 83
Query: 242 atcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttc 301
|||||||||||||| ||||||||||||||| | || ||||| ||||||||||||||||||
Sbjct: 84 atcctgtcacgggtctacccgtccatcgccattggaaaggaggctcacctctacgttttc 143
Query: 302 aacaacggcgagnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccn 361
|||||||| ||| ||||||| || | ||||| || |||||||||||||| ||
Sbjct: 144 aacaacggtgaggtggacgtcaaggtgtcaagcctgacagcatgggagatgaagaagccg 203
Query: 362 ctgatgaacggcgcct 377
||||||||||||||||
Sbjct: 204 ctgatgaacggcgcct 219
>gb|CF770834.1|CF770834 DSBF1_10_C07.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_10_C07_A010 3', mRNA sequence
Length = 530
Score = 165 bits (83), Expect = 4e-039
Identities = 165/196 (84%)
Strand = Plus / Plus
Query: 182 cttagaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgc 241
|||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||
Sbjct: 8 cttagaagcttgatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgc 67
Query: 242 atcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttc 301
|||||||||||||| ||||||||||||||| | || ||||| ||||||||||||||||||
Sbjct: 68 atcctgtcacgggtctacccgtccatcgccattggaaaggaggctcacctctacgttttc 127
Query: 302 aacaacggcgagnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccn 361
|||||||| ||| ||||||| || | ||||| || |||||||||||||| ||
Sbjct: 128 aacaacggtgaggtggacgtcaaggtgtcaagcctgacagcatgggagatgaagaagccg 187
Query: 362 ctgatgaacggcgcct 377
||||||||||||||||
Sbjct: 188 ctgatgaacggcgcct 203
>gb|CD222173.1|CD222173 CCC1_2_D02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_2_D02_A007 3', mRNA sequence
Length = 554
Score = 149 bits (75), Expect = 3e-034
Identities = 163/196 (83%)
Strand = Plus / Plus
Query: 182 cttagaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgc 241
|||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||
Sbjct: 32 cttagaagcttgatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgc 91
Query: 242 atcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttc 301
|||||||||||||| ||||||||||||||| | || ||||| ||||||||||||||||||
Sbjct: 92 atcctgtcacgggtctacccgtccatcgccattggaaaggaggctcacctctacgttttc 151
Query: 302 aacaacggcgagnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccn 361
|||||||| || ||||||| || | |||| || |||||||||||||||||
Sbjct: 152 aacaacggtgacgtggacgtcaaggtgtcaagcttgacagcgtgggagatgaagaaaccg 211
Query: 362 ctgatgaacggcgcct 377
|| |||||||||||||
Sbjct: 212 ctcatgaacggcgcct 227
>gb|CW107381.1|CW107381 104_477_11096552_148_34471_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096552, DNA
sequence
Length = 560
Score = 135 bits (68), Expect = 4e-030
Identities = 153/185 (82%)
Strand = Plus / Minus
Query: 193 gatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacg 252
||||||||||||| |||||||||||||||| ||| | ||| ||||||||||||||
Sbjct: 396 gatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgcatcctgtcacg 337
Query: 253 ggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggcga 312
||| ||||||||||||||| | || ||||| |||||||||||||||||||||||||| ||
Sbjct: 336 ggtctacccgtccatcgccattggaaaggaggctcacctctacgttttcaacaacggtga 277
Query: 313 gnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccnctgatgaacgg 372
||||||| || | ||||| || |||||||||||||| || |||||||||||
Sbjct: 276 cgtggacgtcaaggtgtcaagcctgacagcatgggagatgaagaagccgctgatgaacgg 217
Query: 373 cgcct 377
|||||
Sbjct: 216 cgcct 212
>gb|CW269966.1|CW269966 104_741_11402135_116_35322_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402135, DNA
sequence
Length = 677
Score = 135 bits (68), Expect = 4e-030
Identities = 153/185 (82%)
Strand = Plus / Minus
Query: 193 gatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacg 252
||||||||||||| |||||||||||||||| ||| | ||| ||||||||||||||
Sbjct: 285 gatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgcatcctgtcacg 226
Query: 253 ggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggcga 312
||| ||||||||||||||| | || ||||| |||||||||||||||||||||||||| ||
Sbjct: 225 ggtctacccgtccatcgccattggaaaggaggctcacctctacgttttcaacaacggtga 166
Query: 313 gnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccnctgatgaacgg 372
||||||| || | ||||| || |||||||||||||| || |||||||||||
Sbjct: 165 cgtggacgtcaaggtgtcaagcctgacagcatgggagatgaagaagccgctgatgaacgg 106
Query: 373 cgcct 377
|||||
Sbjct: 105 cgcct 101
Score = 58.0 bits (29), Expect = 7e-007
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 110 cttagtccggatctgtacaagccgaccttcgnnnncttcgtcgac 154
|||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 524 cttagtccagatctgtacaagccgaccttcgccggcttcgtcgac 480
>gb|CW300032.1|CW300032 104_783_11463432_148_36247_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463432, DNA
sequence
Length = 631
Score = 135 bits (68), Expect = 4e-030
Identities = 153/185 (82%)
Strand = Plus / Plus
Query: 193 gatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacg 252
||||||||||||| |||||||||||||||| ||| | ||| ||||||||||||||
Sbjct: 51 gatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgcatcctgtcacg 110
Query: 253 ggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggcga 312
||| ||||||||||||||| | || ||||| |||||||||||||||||||||||||| ||
Sbjct: 111 ggtctacccgtccatcgccattggaaaggaggctcacctctacgttttcaacaacggtga 170
Query: 313 gnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccnctgatgaacgg 372
||||||| || | ||||| || |||||||||||||| || |||||||||||
Sbjct: 171 cgtggacgtcaaggtgtcaagcctgacagcatgggagatgaagaagccgctgatgaacgg 230
Query: 373 cgcct 377
|||||
Sbjct: 231 cgcct 235
>gb|CN135656.1|CN135656 OX1_38_E07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_38_E07_A002 3', mRNA sequence
Length = 813
Score = 135 bits (68), Expect = 4e-030
Identities = 153/185 (82%)
Strand = Plus / Plus
Query: 193 gatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacg 252
||||||||||||| |||||||||||||||| ||| | ||| ||||||||||||||
Sbjct: 299 gatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgcatcctgtcacg 358
Query: 253 ggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggcga 312
||| ||||||||||||||| | || ||||| |||||||||||||||||||||||||| ||
Sbjct: 359 ggtctacccgtccatcgccattggaaaggaggctcacctctacgttttcaacaacggtga 418
Query: 313 gnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccnctgatgaacgg 372
||||||| || | ||||| || |||||||||||||| || |||||||||||
Sbjct: 419 cgtggacgtcaaggtgtcaagcctgacagcatgggagatgaagaagccgctgatgaacgg 478
Query: 373 cgcct 377
|||||
Sbjct: 479 cgcct 483
Score = 119 bits (60), Expect = 2e-025
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 63 acggcaagcccaaggtgctcatgtgcaccgaccccaccaagnnnnctcttagtccggatc 122
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct: 13 acggcaagcccaaggtgctcatgtgcaccgaccccaccaagtcatcgcttagtccagatc 72
Query: 123 tgtacaagccgaccttcgnnnncttcgtcgac 154
|||||||||||||||||| ||||||||||
Sbjct: 73 tgtacaagccgaccttcgccggcttcgtcgac 104
>gb|CN127791.1|CN127791 RHOH1_25_C09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_C09_A002 3', mRNA sequence
Length = 809
Score = 133 bits (67), Expect = 2e-029
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 378 ttcttcagagtcttcaaggacggctacggcaagcccaaggtgctcatgtgcaccgacccc 437
Query: 98 accaagnnnnctcttagtccggatctgtacaagccgaccttcg 140
|||||| | |||||||| ||||||||||||||||||||||
Sbjct: 438 accaagtcatcgcttagtccagatctgtacaagccgaccttcg 480
Score = 56.0 bits (28), Expect = 3e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 335 ctgaccgcctgggagatgaagaaaccnctgatgaacggcgcct 377
||||| || |||||||||||||| || ||||||||||||||||
Sbjct: 510 ctgacagcatgggagatgaagaagccgctgatgaacggcgcct 552
>gb|BG559635.1|BG559635 RHIZ2_71_F04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 295
Score = 123 bits (62), Expect = 2e-026
Identities = 112/130 (86%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3 ttcttcagagtcttcaaggacggctacggcaagcccaaggtgctcatgtgcaccgacccc 62
Query: 98 accaagnnnnctcttagtccggatctgtacaagccgaccttcgnnnncttcgtcgacgcc 157
|||||| | |||||||| ||||||| |||||||||||||| |||||||||| |
Sbjct: 63 accaagtcatcgcttagtccagatctgt-caagccgaccttcgcgggcttcgtcgacact 121
Query: 158 gacatctcga 167
||||| ||||
Sbjct: 122 gacatttcga 131
Score = 89.7 bits (45), Expect = 2e-016
Identities = 105/122 (86%), Gaps = 3/122 (2%)
Strand = Plus / Plus
Query: 187 aagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcct 246
||||||||||||||||||| |||||||||||||||| ||| | ||| ||||||||
Sbjct: 153 aagcttgatcgatcggtccgtggtcgagagcttcggcgaaaaaggaaggacttgcatcct 212
Query: 247 gtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaa 306
||||||||| ||||||||||||||| | || ||||| |||| ||||| ||||||||||||
Sbjct: 213 gtcacgggtctacccgtccatcgccat-ggaaaggaggctc-cctct-cgttttcaacaa 269
Query: 307 cg 308
||
Sbjct: 270 cg 271
>gb|BG465260.1|BG465260 EM1_74_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 117 bits (59), Expect = 9e-025
Identities = 117/139 (84%)
Strand = Plus / Plus
Query: 239 tgcatcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgtt 298
||||||||||||||||| ||||||||||||||| | || ||||| |||||||||||||||
Sbjct: 17 tgcatcctgtcacgggtctacccgtccatcgccattggaaaggaggctcacctctacgtt 76
Query: 299 ttcaacaacggcgagnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaa 358
||||||||||| || ||||||| || | ||||| || ||||||||||||||
Sbjct: 77 ttcaacaacggtgacgtggacgtcaaggtgtcaagcctgacagcatgggagatgaagaag 136
Query: 359 ccnctgatgaacggcgcct 377
|| ||||||||||||||||
Sbjct: 137 ccgctgatgaacggcgcct 155
>gb|CW046110.1|CW046110 104_283_10509970_114_30137 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509970, DNA
sequence
Length = 490
Score = 99.6 bits (50), Expect = 2e-019
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 430 ttcttcagagtcttcaaggacggctacggcaagcccaaggtgctcatgtgcaccgacccc 371
Query: 98 accaag 103
||||||
Sbjct: 370 accaag 365
Score = 58.0 bits (29), Expect = 7e-007
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 110 cttagtccggatctgtacaagccgaccttcgnnnncttcgtcgac 154
|||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 222 cttagtccagatctgtacaagccgaccttcgccggcttcgtcgac 178
>gb|CW107380.1|CW107380 104_477_11096552_116_34475_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096552, DNA
sequence
Length = 333
Score = 99.6 bits (50), Expect = 2e-019
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 235 ttcttcagagtcttcaaggacggctacggcaagcccaaggtgctcatgtgcaccgacccc 294
Query: 98 accaag 103
||||||
Sbjct: 295 accaag 300
>gb|CW225943.1|CW225943 104_663_11204625_148_37212_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204625, DNA
sequence
Length = 616
Score = 99.6 bits (50), Expect = 2e-019
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 153 ttcttcagagtcttcaaggacggctacggcaagcccaaggtgctcatgtgcaccgacccc 94
Query: 98 accaag 103
||||||
Sbjct: 93 accaag 88
>gb|CW269967.1|CW269967 104_741_11402135_148_35326_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402135, DNA
sequence
Length = 683
Score = 99.6 bits (50), Expect = 2e-019
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 423 ttcttcagagtcttcaaggacggctacggcaagcccaaggtgctcatgtgcaccgacccc 482
Query: 98 accaag 103
||||||
Sbjct: 483 accaag 488
Score = 58.0 bits (29), Expect = 7e-007
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 110 cttagtccggatctgtacaagccgaccttcgnnnncttcgtcgac 154
|||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 631 cttagtccagatctgtacaagccgaccttcgccggcttcgtcgac 675
>gb|CW415441.1|CW415441 fsbb001f115i18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f115i18, DNA
sequence
Length = 649
Score = 99.6 bits (50), Expect = 2e-019
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 277 ttcttcagagtcttcaaggacggctacggcaagcccaaggtgctcatgtgcaccgacccc 218
Query: 98 accaag 103
||||||
Sbjct: 217 accaag 212
Score = 58.0 bits (29), Expect = 7e-007
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 110 cttagtccggatctgtacaagccgaccttcgnnnncttcgtcgac 154
|||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 69 cttagtccagatctgtacaagccgaccttcgccggcttcgtcgac 25
>gb|AI724130.1|AI724130 RHIZ1_7_B04.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 497
Score = 87.7 bits (44), Expect = 8e-016
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 239 tgcatcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgtt 298
||||||||||||||||| ||||||||||||||| | || ||||| |||| ||| ||||||
Sbjct: 13 tgcatcctgtcacgggtctacccgtccatcgccattggaaaggaggctcccctttacgtt 72
Query: 299 ttcaacaacggcgagnnngacgtca 323
||||||||||| ||| |||||||
Sbjct: 73 ttcaacaacggtgaggtggacgtca 97
>gb|CL181798.1|CL181798 104_392_10896983_148_31925_359 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896983, DNA
sequence
Length = 684
Score = 77.8 bits (39), Expect = 8e-013
Identities = 136/171 (79%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
|||||||| || || || ||||||||||||||||| || |||| |||||||| |||||
Sbjct: 258 gagagctttggagccgggggcaagacgtgcatcctctccagggtctacccgtcgctcgcc 199
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtcacnnnntcc 331
|||| ||| |||| | ||||||||| ||||||||||| || ||||||| |||
Sbjct: 198 atcggcaagaacgcccgcctctacgtgttcaacaacgggaaggcggacgtcaaggtgtcc 139
Query: 332 ggtctgaccgcctgggagatgaagaaaccnctgatgaacggcgcctgaaat 382
|||| ||||| |||||||||||||| || || ||||| || || ||||||
Sbjct: 138 agtctcaccgcatgggagatgaagaagccactcatgaatggagcttgaaat 88
>gb|CW306883.1|CW306883 104_792_11467079_148_35713_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11467079, DNA
sequence
Length = 624
Score = 77.8 bits (39), Expect = 8e-013
Identities = 136/171 (79%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
|||||||| || || || ||||||||||||||||| || |||| |||||||| |||||
Sbjct: 127 gagagctttggagccgggggcaagacgtgcatcctctccagggtctacccgtcgctcgcc 186
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtcacnnnntcc 331
|||| ||| |||| | ||||||||| ||||||||||| || ||||||| |||
Sbjct: 187 atcggcaagaacgcccgcctctacgtgttcaacaacgggaaggcggacgtcaaggtgtcc 246
Query: 332 ggtctgaccgcctgggagatgaagaaaccnctgatgaacggcgcctgaaat 382
|||| ||||| |||||||||||||| || || ||||| || || ||||||
Sbjct: 247 agtctcaccgcatgggagatgaagaagccactcatgaatggagcttgaaat 297
>gb|CW498600.1|CW498600 fsbb001f291o14k0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f291o14, DNA
sequence
Length = 626
Score = 77.8 bits (39), Expect = 8e-013
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccg 92
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 59 ttcttcagagtcttcaaggacggctacggcaagcccaaggtgctcatgtgcaccg 5
>gb|CX611907.1|CX611907 ANR1_27_H10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_27_H10_A002 3', mRNA sequence
Length = 834
Score = 77.8 bits (39), Expect = 8e-013
Identities = 154/196 (78%)
Strand = Plus / Plus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||||||||||| || || || |||||||| || || || |||||||||||||||
Sbjct: 530 agaagcttgatcgaccgctcggtggtggagagctttggagccgggggcaagacgtgcatc 589
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
||||| |||| |||||||| ||||| |||| || |||| | ||||||||| ||||||
Sbjct: 590 ctgtccagggtctacccgtcgctcgccatcggcaacaacgcgcgcctctacgtgttcaac 649
Query: 305 aacggcgagnnngacgtcacnnnntccggtctgaccgcctgggagatgaagaaaccnctg 364
||||| || ||||||| ||| |||| || || |||||||||||||| || ||
Sbjct: 650 aacgggaaggcggacgtcagggtgtcccgtctcactgcatgggagatgaagaagccactc 709
Query: 365 atgaacggcgcctgaa 380
||||| ||||| ||||
Sbjct: 710 atgaatggcgcatgaa 725
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 gtgctcatgtgcaccgaccccaccaag 103
|||||||||||||||||||| ||||||
Sbjct: 422 gtgctcatgtgcaccgaccctaccaag 448
>gb|CW065110.1|CW065110 104_311_10522954_115_30121 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522954, DNA
sequence
Length = 583
Score = 73.8 bits (37), Expect = 1e-011
Identities = 122/153 (79%)
Strand = Plus / Minus
Query: 230 ggcaagacgtgcatcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcac 289
||||||||||||||||| || |||| |||||||| ||||| |||| ||| |||| | |
Sbjct: 577 ggcaagacgtgcatcctctccagggtctacccgtcgctcgccatcggcaagaacgcccgc 518
Query: 290 ctctacgttttcaacaacggcgagnnngacgtcacnnnntccggtctgaccgcctgggag 349
|||||||| ||||||||||| || ||||||| ||| |||| ||||| ||||||
Sbjct: 517 ctctacgtgttcaacaacgggaaggcggacgtcaaggtgtccagtctcaccgcatgggag 458
Query: 350 atgaagaaaccnctgatgaacggcgcctgaaat 382
|||||||| || || ||||| || || ||||||
Sbjct: 457 atgaagaagccactcatgaatggagcttgaaat 425
>gb|CW151042.1|CW151042 104_551_11143730_148_36309_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143730, DNA
sequence
Length = 554
Score = 73.8 bits (37), Expect = 1e-011
Identities = 134/169 (79%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
|||||||| || || || |||||||||||||||||||| |||| |||||||| |||||
Sbjct: 359 gagagctttggagccgggggcaagacgtgcatcctgtccagggtctacccgtcgctcgcc 300
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtcacnnnntcc 331
|||| || |||| | ||||||||| ||||||||||| || ||||||| |||
Sbjct: 299 atcggcaacaacgcgcgcctctacgtgttcaacaacgggaaggcggacgtcagggtgtcc 240
Query: 332 ggtctgaccgcctgggagatgaagaaaccnctgatgaacggcgcctgaa 380
|||| || || |||||||||||||| || || ||||| ||||| ||||
Sbjct: 239 cgtctcactgcatgggagatgaagaagccactcatgaatggcgcatgaa 191
>gb|CW400389.1|CW400389 fsbb001f090k19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f090k19, DNA
sequence
Length = 753
Score = 73.8 bits (37), Expect = 1e-011
Identities = 134/169 (79%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
|||||||| || || || |||||||||||||||||||| |||| |||||||| |||||
Sbjct: 609 gagagctttggagccgggggcaagacgtgcatcctgtccagggtctacccgtcgctcgcc 550
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtcacnnnntcc 331
|||| || |||| | ||||||||| ||||||||||| || ||||||| |||
Sbjct: 549 atcggcaacaacgcgcgcctctacgtgttcaacaacgggaaggcggacgtcagggtgtcc 490
Query: 332 ggtctgaccgcctgggagatgaagaaaccnctgatgaacggcgcctgaa 380
|||| || || |||||||||||||| || || ||||| ||||| ||||
Sbjct: 489 cgtctcactgcatgggagatgaagaagccactcatgaatggcgcatgaa 441
>gb|CW231621.1|CW231621 104_681_11211220_116_37346_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211220, DNA
sequence
Length = 633
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
|||||||| || || |||||||| ||||||||||| || ||||||||||||| | |||
Sbjct: 323 gagagctttggagctggaggcaaaacgtgcatcctctccagggtgtacccgtcgcttgcc 264
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| || | |||||||||||||| |||||||||||
Sbjct: 263 atcggcaacaaggctcacctctacgtgttcaacaacgg 226
>gb|CW231622.1|CW231622 104_681_11211220_148_37350_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211220, DNA
sequence
Length = 688
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
|||||||| || || |||||||| ||||||||||| || ||||||||||||| | |||
Sbjct: 389 gagagctttggagctggaggcaaaacgtgcatcctctccagggtgtacccgtcgcttgcc 448
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| || | |||||||||||||| |||||||||||
Sbjct: 449 atcggcaacaaggctcacctctacgtgttcaacaacgg 486
>gb|CW457046.1|CW457046 fsbb001f202l01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f202l01, DNA
sequence
Length = 775
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
|||||||| || || |||||||| ||||||||||| || ||||||||||||| | |||
Sbjct: 594 gagagctttggagctggaggcaaaacgtgcatcctctccagggtgtacccgtcgcttgcc 535
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| || | |||||||||||||| |||||||||||
Sbjct: 534 atcggcaacaaggctcacctctacgtgttcaacaacgg 497
>gb|CW498974.1|CW498974 fsbb001f293i01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293i01, DNA
sequence
Length = 659
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
|||||||| || || |||||||| ||||||||||| || ||||||||||||| | |||
Sbjct: 508 gagagctttggagctggaggcaaaacgtgcatcctctccagggtgtacccgtcgcttgcc 449
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| || | |||||||||||||| |||||||||||
Sbjct: 448 atcggcaacaaggctcacctctacgtgttcaacaacgg 411
>gb|CW394783.1|CW394783 fsbb001f082i17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f082i17, DNA
sequence
Length = 710
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| ||| |||||||| ||||||||||| ||||||||||| ||| |||
Sbjct: 338 gagagcttcggggcgcacggcaagacttgcatcctgtcgagggtgtacccgaccaaggcc 279
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtca 323
||||| | | || | |||||||| ||||||||||||||| |||||||
Sbjct: 278 gtcggcgacaaggcacggctctacgtgttcaacaacggcgagtcggacgtca 227
>gb|CF485887.1|CF485887 POL1_34_G06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_G06_A002 3', mRNA sequence
Length = 569
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/112 (80%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| ||| |||||||| ||||||||||| ||||||||||| ||| |||
Sbjct: 189 gagagcttcggggcgcacggcaagacttgcatcctgtcgagggtgtacccgaccaaggcc 248
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtca 323
||||| | | || | |||||||| ||||||||||||||| |||||||
Sbjct: 249 gtcggcgacaaggcacggctctacgtgttcaacaacggcgagtcggacgtca 300
>gb|CW023223.1|CW023223 104_163_10432326_1_30001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432326, DNA
sequence
Length = 253
Score = 52.0 bits (26), Expect = 5e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
|||||||| || || || ||||||||||||||||| || |||| |||||||| | ||
Sbjct: 100 gagagctttggagccgggggcaagacgtgcatcctctccagggtctacccgtcgaaaacc 41
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| ||| |||| | ||||||||| |||||||||||
Sbjct: 40 atcggcaagaacgcccgcctctacgtgttcaacaacgg 3
>gb|CW022072.1|CW022072 104_161_10431625_5_30007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431625, DNA
sequence
Length = 405
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 77 gtgctcatgtgcaccgaccccaccaag 103
|||||||||||||||||||| ||||||
Sbjct: 281 gtgctcatgtgcaccgaccctaccaag 255
>gb|CW262736.1|CW262736 104_730_11230244_116_35224_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230244, DNA
sequence
Length = 654
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 gtgctcatgtgcaccgaccccaccaag 103
|||||||||||||||||||| ||||||
Sbjct: 541 gtgctcatgtgcaccgaccctaccaag 567
>gb|CW262737.1|CW262737 104_730_11230244_148_35220_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230244, DNA
sequence
Length = 638
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 77 gtgctcatgtgcaccgaccccaccaag 103
|||||||||||||||||||| ||||||
Sbjct: 278 gtgctcatgtgcaccgaccctaccaag 252
>gb|CW400388.1|CW400388 fsbb001f090k19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f090k19, DNA
sequence
Length = 663
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 gtgctcatgtgcaccgaccccaccaag 103
|||||||||||||||||||| ||||||
Sbjct: 492 gtgctcatgtgcaccgaccctaccaag 518
>gb|CW457045.1|CW457045 fsbb001f202l01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f202l01, DNA
sequence
Length = 288
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 gtgctcatgtgcaccgaccccaccaag 103
|||||||||||||||||||| ||||||
Sbjct: 243 gtgctcatgtgcaccgaccctaccaag 269
>gb|CW498973.1|CW498973 fsbb001f293i01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293i01, DNA
sequence
Length = 595
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 gtgctcatgtgcaccgaccccaccaag 103
|||||||||||||||||||| ||||||
Sbjct: 210 gtgctcatgtgcaccgaccctaccaag 236
>gb|CL181797.1|CL181797 104_392_10896983_116_31926_359 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896983, DNA
sequence
Length = 649
Score = 44.1 bits (22), Expect = 0.011
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 ggtgctcatgtgcaccgacccc 97
||||||||||||||||||||||
Sbjct: 448 ggtgctcatgtgcaccgacccc 469
>gb|CW042642.1|CW042642 104_276_10507205_114_30482 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507205, DNA
sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.011
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 ggtgctcatgtgcaccgacccc 97
||||||||||||||||||||||
Sbjct: 475 ggtgctcatgtgcaccgacccc 496
>gb|CW050897.1|CW050897 104_291_10514924_115_30196 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514924, DNA
sequence
Length = 338
Score = 44.1 bits (22), Expect = 0.011
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 76 ggtgctcatgtgcaccgacccc 97
||||||||||||||||||||||
Sbjct: 131 ggtgctcatgtgcaccgacccc 110
>gb|CW065109.1|CW065109 104_311_10522954_114_30122 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522954, DNA
sequence
Length = 388
Score = 44.1 bits (22), Expect = 0.011
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 ggtgctcatgtgcaccgacccc 97
||||||||||||||||||||||
Sbjct: 263 ggtgctcatgtgcaccgacccc 284
>gb|CW385193.1|CW385193 fsbb001f068j07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068j07, DNA
sequence
Length = 710
Score = 44.1 bits (22), Expect = 0.011
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 ggtgctcatgtgcaccgacccc 97
||||||||||||||||||||||
Sbjct: 453 ggtgctcatgtgcaccgacccc 474
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,562
Number of Sequences: 832831
Number of extensions: 90562
Number of successful extensions: 33900
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33723
Number of HSP's gapped (non-prelim): 144
length of query: 463
length of database: 491,359,669
effective HSP length: 19
effective length of query: 444
effective length of database: 475,535,880
effective search space: 211137930720
effective search space used: 211137930720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)