BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBB9c12.pg.2.1
(545 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN148075.1|CN148075 WOUND1_54_C02.b1_A002 Wounded leaves... 688 0.0
gb|CD424348.1|CD424348 SA1_5_E09.b1_A002 Salicylic acid-tre... 628 e-178
gb|CW432748.1|CW432748 fsbb001f147k02f0 Sorghum methylation... 450 e-125
gb|CB928778.1|CB928778 ABA1_24_C06.b1_A012 Abscisic acid-tr... 406 e-112
gb|CW311011.1|CW311011 104_800_11470011_116_35753_010 Sorgh... 272 3e-071
gb|CW150106.1|CW150106 104_549_11142853_116_36303_057 Sorgh... 54 1e-005
gb|AW677595.1|AW677595 DG1_8_E07.g1_A002 Dark Grown 1 (DG1)... 54 1e-005
gb|BI643608.1|BI643608 DG1_91_A08.b1_A002 Dark Grown 1 (DG1... 54 1e-005
gb|CD224613.1|CD224613 CCC1_35_F08.b1_A007 Callus culture/c... 46 0.003
gb|CW253228.1|CW253228 104_716_11224968_148_35099_084 Sorgh... 44 0.013
gb|CW351075.1|CW351075 fsbb001f012k24f0 Sorghum methylation... 44 0.013
gb|CW351160.1|CW351160 fsbb001f012m22f0 Sorghum methylation... 44 0.013
>gb|CN148075.1|CN148075 WOUND1_54_C02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_54_C02_A002 3', mRNA sequence
Length = 746
Score = 688 bits (347), Expect = 0.0
Identities = 455/491 (92%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 gagctgggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 147
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 148 gaagaacacaaattgtccaatgaacttcgtgccaagtgcaaggaacgtggccttatcgtt 207
Query: 125 tcttggtgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacat 184
||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 208 tcttggtgctcccagctcgaagttctagcacataaagccacaggttgtttcttcacacat 267
Query: 185 tgcggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaatacca 244
||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||||||
Sbjct: 268 tgcggatggaactcgacgctggaagcagtagttaatggtgtgccaatggtggcaatacca 327
Query: 245 cactgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtc 304
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 328 cattgggcagaccagccgaccatatcaaaatatatggagagcatatggggattgggtgtc 387
Query: 305 cgagtgcgcaaggatgagaaaggcttggtaacgagggacgaggtggaaaggtgcatcaag 364
|| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct: 388 cgggtgcgcaaggatgagaaaggtttggtgacgagagacgaggtggaaaggtgcatcaag 447
Query: 365 gatgtcatggatggtgatagtaaggataagtataggaagagtgccactatgtggatgcaa 424
||||| |||||||| ||||| |||||||| ||||||| || |||| |||||||||||||
Sbjct: 448 gatgttatggatggggatagaaaggataattataggatgaacgccattatgtggatgcaa 507
Query: 425 aaggccaaggcagctatgcagaatggagggagctcggccaagaatattacagaattcgcc 484
|||||||||| ||| |||||||||||||||||||||| ||||||| || |||||||
Sbjct: 508 aaggccaaggaagccatgcagaatggagggagctcggacaagaatgtttgtgaattcgtg 567
Query: 485 gcgaagtattc 495
|||||||||||
Sbjct: 568 gcgaagtattc 578
>gb|CD424348.1|CD424348 SA1_5_E09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_5_E09_A002 3', mRNA sequence
Length = 606
Score = 628 bits (317), Expect = e-178
Identities = 423/457 (92%), Gaps = 1/457 (0%)
Strand = Plus / Plus
Query: 39 cattcatttgggttgtgaggtcaaacgaagaacacaagttgtccaatgaacttcgtgaca 98
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 1 cattcatttgggttg-gaggtcaaacgaagaacacaaattgtccaatgaacttcgtgcca 59
Query: 99 agtgcaaggaacgtggccttattgtttcttggtgcccccagctggaagttctagcacata 158
|||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct: 60 agtgcaaggaacgtggccttatcgtttcttggtgctcccagctcgaagttctagcacata 119
Query: 159 aagctacaggttgtttcttcacacattgcggatggaactcgacattggaagcaattgtta 218
|||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct: 120 aagccacaggttgtttcttcacacattgcggatggaactcgacgctggaagcagtagtta 179
Query: 219 atggtgtgccaatggcggcaataccacactgggcagaccagccgaccatatcaaaatata 278
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atggtgtgccaatggtggcaataccacactgggcagaccagccgaccatatcaaaatata 239
Query: 279 tggagagcatgtggggcttgggtgtccgagtgcgcaaggatgagaaaggcttggtaacga 338
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 240 tggagagcatatggggattgggtgtccgggtgcgcaaggatgagaaaggcttggtgacga 299
Query: 339 gggacgaggtggaaaggtgcatcaaggatgtcatggatggtgatagtaaggataagtata 398
| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||
Sbjct: 300 gagacgaggtggaaaggtgcatcaaggatgttatggatggggatagaaaggataattata 359
Query: 399 ggaagagtgccactatgtggatgcaaaaggccaaggcagctatgcagaatggagggagct 458
||| || ||| |||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 360 ggatgaacgcccctatgtggatgcaaaaggccaaggaagccatgcagaatggagggagct 419
Query: 459 cggccaagaatattacagaattcgccgcgaagtattc 495
||| ||||||| || ||||||| |||||||||||
Sbjct: 420 cggacaagaatgtttgtgaattcgtggcgaagtattc 456
>gb|CW432748.1|CW432748 fsbb001f147k02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147k02, DNA
sequence
Length = 738
Score = 450 bits (227), Expect = e-125
Identities = 305/331 (92%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggtg 224
||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct: 389 caggttgtttcttcacacattgcggatggaactcgacgctggaagcagtagttaatggtg 330
Query: 225 tgccaatggcggcaataccacactgggcagaccagccgaccatatcaaaatatatggaga 284
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgccaatggtggcaataccacactgggcagaccagccgaccatatcaaaatatatggaga 270
Query: 285 gcatgtggggcttgggtgtccgagtgcgcaaggatgagaaaggcttggtaacgagggacg 344
|||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct: 269 gcatatggggattgggtgtccgggtgcgcaaggatgagaaaggcttggtgacgagagacg 210
Query: 345 aggtggaaaggtgcatcaaggatgtcatggatggtgatagtaaggataagtataggaaga 404
||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||| ||
Sbjct: 209 aggtggaaaggtgcatcaaggatgttatggatggggatagaaaggataattataggatga 150
Query: 405 gtgccactatgtggatgcaaaaggccaaggcagctatgcagaatggagggagctcggcca 464
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct: 149 acgccactatgtggatgcaaaaggccaaggaagccatgcagaatggagggagctcggaca 90
Query: 465 agaatattacagaattcgccgcgaagtattc 495
||||| || ||||||| |||||||||||
Sbjct: 89 agaatgtttgtgaattcgtggcgaagtattc 59
Score = 272 bits (137), Expect = 3e-071
Identities = 158/165 (95%)
Strand = Plus / Minus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gagctgggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 584
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 583 gaagaacacaaattgtccaatgaacttcgtgccaagtgcaaggaacgtggccttatcgtt 524
Query: 125 tcttggtgcccccagctggaagttctagcacataaagctacaggt 169
||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct: 523 tcttggtgctcccagctcgaagttctagcacataaagccacaggt 479
>gb|CB928778.1|CB928778 ABA1_24_C06.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_24_C06_A012 3', mRNA sequence
Length = 513
Score = 406 bits (205), Expect = e-112
Identities = 286/313 (91%)
Strand = Plus / Plus
Query: 183 attgcggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaatac 242
||||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||||
Sbjct: 1 attgcggatggaactcgacgctggaagcagtagttaatggtgtgccaatggtggcaatac 60
Query: 243 cacactgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtg 302
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 61 cacactgggcagaccagccgaccatatcaaaatatatggagagcatatggggattgggtg 120
Query: 303 tccgagtgcgcaaggatgagaaaggcttggtaacgagggacgaggtggaaaggtgcatca 362
|||| |||||||||||||||||||||||||| ||||| |||||||||| |||||||||||
Sbjct: 121 tccgggtgcgcaaggatgagaaaggcttggtgacgagagacgaggtgggaaggtgcatca 180
Query: 363 aggatgtcatggatggtgatagtaaggataagtataggaagagtgccactatgtggatgc 422
||||||| |||||||| ||||| |||||||| ||||||| || ||||||||||||||||
Sbjct: 181 aggatgttatggatggggatagaaaggataattataggatgaacgccactatgtggatgc 240
Query: 423 aaaaggccaaggcagctatgcagaatggagggagctcggccaagaatattacagaattcg 482
|||||||||||| ||| |||||||||||||||||||||| ||||||| || |||||||
Sbjct: 241 aaaaggccaaggaagccatgcagaatggagggagctcggacaagaatgtttgtgaattcg 300
Query: 483 ccgcgaagtattc 495
|||||||||||
Sbjct: 301 tggcgaagtattc 313
>gb|CW311011.1|CW311011 104_800_11470011_116_35753_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470011, DNA
sequence
Length = 747
Score = 272 bits (137), Expect = 3e-071
Identities = 158/165 (95%)
Strand = Plus / Minus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gagctgggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 225
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 224 gaagaacacaaattgtccaatgaacttcgtgccaagtgcaaggaacgtggccttatcgtt 165
Query: 125 tcttggtgcccccagctggaagttctagcacataaagctacaggt 169
||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct: 164 tcttggtgctcccagctcgaagttctagcacataaagccacaggt 120
Score = 60.0 bits (30), Expect = 2e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatgga 194
||||||||||||||||||||||||||||||
Sbjct: 30 caggttgtttcttcacacattgcggatgga 1
>gb|CW150106.1|CW150106 104_549_11142853_116_36303_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142853, DNA
sequence
Length = 658
Score = 54.0 bits (27), Expect = 1e-005
Identities = 138/175 (78%)
Strand = Plus / Minus
Query: 320 gagaaaggcttggtaacgagggacgaggtggaaaggtgcatcaaggatgtcatggatggt 379
||||| |||||||| | |||||| |||||||| ||||||||| ||| || ||||| ||
Sbjct: 197 gagaagggcttggtgaggagggaggaggtggagaggtgcatccgggaggtgatggaaggg 138
Query: 380 gatagtaaggataagtataggaagagtgccactatgtggatgcaaaaggccaaggcagct 439
|| || |||||| ||| ||| ||| ||| | | |||||| | |||||||||| |||
Sbjct: 137 gagaggaaggatgagttcaggcagaatgcggcgagatggatgaagaaggccaaggaagcg 78
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtatt 494
|||||| | ||||||||||| | |||||| ||| | ||||| || || |||||||
Sbjct: 77 atgcaggaaggagggagctctgacaagaacattgctgaatttgcagcaaagtatt 23
>gb|AW677595.1|AW677595 DG1_8_E07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 530
Score = 54.0 bits (27), Expect = 1e-005
Identities = 138/175 (78%)
Strand = Plus / Plus
Query: 320 gagaaaggcttggtaacgagggacgaggtggaaaggtgcatcaaggatgtcatggatggt 379
||||| |||||||| | |||||| |||||||| ||||||||| ||| || ||||| ||
Sbjct: 213 gagaagggcttggtgaggagggaggaggtggagaggtgcatccgggaggtgatggaaggg 272
Query: 380 gatagtaaggataagtataggaagagtgccactatgtggatgcaaaaggccaaggcagct 439
|| || |||||| ||| ||| ||| ||| | | |||||| | |||||||||| |||
Sbjct: 273 gagaggaaggatgagttcaggcagaatgcggcgagatggatgaagaaggccaaggaagcg 332
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtatt 494
|||||| | ||||||||||| | |||||| ||| | ||||| || || |||||||
Sbjct: 333 atgcaggaaggagggagctctgacaagaacattgctgaatttgcagcaaagtatt 387
>gb|BI643608.1|BI643608 DG1_91_A08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 484
Score = 54.0 bits (27), Expect = 1e-005
Identities = 138/175 (78%)
Strand = Plus / Minus
Query: 320 gagaaaggcttggtaacgagggacgaggtggaaaggtgcatcaaggatgtcatggatggt 379
||||| |||||||| | |||||| |||||||| ||||||||| ||| || ||||| ||
Sbjct: 369 gagaagggcttggtgaggagggaggaggtggagaggtgcatccgggaggtgatggaaggg 310
Query: 380 gatagtaaggataagtataggaagagtgccactatgtggatgcaaaaggccaaggcagct 439
|| || |||||| ||| ||| ||| ||| | | |||||| | |||||||||| |||
Sbjct: 309 gagaggaaggatgagttcaggcagaatgcggcgagatggatgaagaaggccaaggaagcg 250
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtatt 494
|||||| | ||||||||||| | |||||| ||| | ||||| || || |||||||
Sbjct: 249 atgcaggaaggagggagctctgacaagaacattgctgaatttgcagcaaagtatt 195
>gb|CD224613.1|CD224613 CCC1_35_F08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_35_F08_A007 3', mRNA sequence
Length = 609
Score = 46.1 bits (23), Expect = 0.003
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 416 tggatgcaaaaggccaaggcagctatgcagaatggagggagctcggccaagaatattaca 475
|||||| | |||||||||| ||| |||||| | ||||||||||| | |||||| ||| |
Sbjct: 360 tggatgaagaaggccaaggaagcgatgcaggaaggagggagctctgacaagaacattgct 419
Query: 476 gaattcgccgcgaagtatt 494
||||| || || |||||||
Sbjct: 420 gaatttgcagcaaagtatt 438
Score = 42.1 bits (21), Expect = 0.052
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 220 tggtgtgccaatggcggcaataccacactgggcagaccagccgac 264
|||||| ||||||||||| || || || ||||| |||||||||||
Sbjct: 173 tggtgttccaatggcggcgatgccgcagtgggcggaccagccgac 217
>gb|CW253228.1|CW253228 104_716_11224968_148_35099_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224968, DNA
sequence
Length = 561
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 170 tgtttcttcacacattgcggatggaactcgacattgga 207
|||||||| || |||||||| ||||||||||| |||||
Sbjct: 201 tgtttcttgacgcattgcgggtggaactcgacgttgga 238
>gb|CW351075.1|CW351075 fsbb001f012k24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012k24, DNA
sequence
Length = 710
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 170 tgtttcttcacacattgcggatggaactcgacattgga 207
|||||||| || |||||||| ||||||||||| |||||
Sbjct: 157 tgtttcttgacgcattgcgggtggaactcgacgttgga 194
>gb|CW351160.1|CW351160 fsbb001f012m22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012m22, DNA
sequence
Length = 637
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 170 tgtttcttcacacattgcggatggaactcgacattgga 207
|||||||| || |||||||| ||||||||||| |||||
Sbjct: 157 tgtttcttgacgcattgcgggtggaactcgacgttgga 194
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,572
Number of Sequences: 832831
Number of extensions: 136572
Number of successful extensions: 37434
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37412
Number of HSP's gapped (non-prelim): 21
length of query: 545
length of database: 491,359,669
effective HSP length: 19
effective length of query: 526
effective length of database: 475,535,880
effective search space: 250131872880
effective search space used: 250131872880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)