BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAW3a11.yg.2.1
(969 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum b... 904 0.0
gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorgh... 589 e-166
gb|BF585676.1|BF585676 FM1_24_C05.g1_A003 Floral-Induced Me... 531 e-149
gb|CF757149.1|CF757149 DSAF1_14_D03.g1_A011 Drought-stresse... 307 1e-081
gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2... 165 9e-039
gb|CW144376.1|CW144376 104_536_11137911_116_34966_056 Sorgh... 163 4e-038
gb|BI099257.1|BI099257 IP1_40_E11.g1_A002 Immature pannicle... 163 4e-038
gb|CF483811.1|CF483811 POL1_24_G11.g1_A002 Pollen Sorghum b... 155 9e-036
gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorgh... 141 1e-031
gb|BM326723.1|BM326723 PIC1_1_H10.g1_A002 Pathogen-infected... 131 1e-028
gb|CL193723.1|CL193723 104_417_10941134_116_32279_053 Sorgh... 127 2e-027
gb|CW285992.1|CW285992 104_763_11410641_148_35507_039 Sorgh... 127 2e-027
gb|CF480371.1|CF480371 POL1_65_H05.b1_A002 Pollen Sorghum b... 123 3e-026
gb|CF482490.1|CF482490 POL1_7_F08.b1_A002 Pollen Sorghum bi... 56 6e-006
gb|CL197598.1|CL197598 104_424_10943847_114_32384_054 Sorgh... 48 0.002
gb|CW082577.1|CW082577 104_424_10943847_114_32335_054 Sorgh... 48 0.002
gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Me... 48 0.002
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 48 0.002
gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves... 48 0.002
gb|CW306008.1|CW306008 104_791_11466607_148_36273_024 Sorgh... 46 0.006
gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient se... 46 0.006
gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infecte... 44 0.024
gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed see... 44 0.024
gb|CD431168.1|CD431168 ETH1_7_B07.b1_A002 Ethylene-treated ... 44 0.024
gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkal... 44 0.024
gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinol... 44 0.024
gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infecte... 42 0.094
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 42 0.094
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.37
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.37
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 40 0.37
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.37
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 40 0.37
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.37
>gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D11_A002 3', mRNA sequence
Length = 661
Score = 904 bits (456), Expect = 0.0
Identities = 521/542 (96%), Gaps = 2/542 (0%)
Strand = Plus / Plus
Query: 168 taatttttcaaatccacacattgctcggaactttgatccaaatgcatgtggctgggctta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taatttttcaaatccacacattgctcggaactttgatccaaatgcatgtggctgggctta 60
Query: 228 tgggatgaacatctttgatctgagggagtggaagaagaaagatattactgggatctacca 287
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggatgaacatctttgatttgagggagtggaagaagaaagatattactgggatctacca 120
Query: 288 caaatggcaaaatatgaatgaagacagggtcctttggaagcttgggacacttccgcctgg 347
||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 121 caaatggcaaaatctgaatgaagacagagctctttggaagcttgggacacttccgcctgg 180
Query: 348 cctcttgaccttctataagttgacgcacccactggacaagtcatggcatgttcttggatt 407
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cctcttgaccttctacaagttgacgcacccactggacaagtcatggcatgttcttggatt 240
Query: 408 aggatacaacccaagcattgaccgttcagagatagacaatgctgctgtggttcattacaa 467
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 241 aggatacaacccaagcatagaccgttcagagatagacagtgctgctgtggttcattacaa 300
Query: 468 tgggaacatgaagccatggctggagctagcaatgaccaagtaccgaccatattggaccaa 527
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgggaacatgaagccatggttggagctagcaatgaccaagtaccgaccatattggaccaa 360
Query: 528 gtatatcaagtatgatcacccttacatccgtggatgcaacttgagtgagtagatagtcgt 587
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 361 gtatatcaagtatgatcacccttacatccgtgggtgcaacttgagtgagtagatagtcgt 420
Query: 588 gctgaaaaactgacagatgaggaagagcttattggacagaagtgttccactaccatgtcc 647
|||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 421 gctg--aaactgacagatgaggaagagcctgttggacagaagtgttccactaccatgtcc 478
Query: 648 ttgcggtgcgttattcgactcagcaaagtggtactacctcaagctcttgattgctttcct 707
|||||||||||| || || |||||||||||||||||| ||||||||||||| ||||||
Sbjct: 479 ttgcggtgcgttctttgatacagcaaagtggtactaccggaagctcttgattgntttcct 538
Query: 708 cc 709
||
Sbjct: 539 cc 540
Score = 42.1 bits (21), Expect = 0.094
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 725 aaaattcaccggtggctgttctgacgagt 753
||||||||| ||||| |||||||||||||
Sbjct: 569 aaaattcactggtggatgttctgacgagt 597
>gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137911, DNA
sequence
Length = 622
Score = 589 bits (297), Expect = e-166
Identities = 336/348 (96%), Gaps = 2/348 (0%)
Strand = Plus / Plus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gaatgaagacagagctctttggaagcttgggacacttccgcctggcctcttgaccttcta 336
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 caagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 396
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 397 catagaccgttcagagatagacagtgctgctgtggttcattacaatgggaacatgaagcc 456
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatga 542
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atggttggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatga 516
Query: 543 tcacccttacatccgtggatgcaacttgagtgagtagatagtcgtgctgaaaaactgaca 602
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 517 tcacccttacatccgtgggtgcaacttgagtgagtagatagtcgtgctg--aaactgaca 574
Query: 603 gatgaggaagagcttattggacagaagtgttccactaccatgtccttg 650
||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 575 gatgaggaagagcctgttggacagaagtgttccactaccatgtccttg 622
Score = 266 bits (134), Expect = 3e-069
Identities = 137/138 (99%)
Strand = Plus / Plus
Query: 163 tatcttaatttttcaaatccacacattgctcggaactttgatccaaatgcatgtggctgg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tatcttaatttttcaaatccacacattgctcggaactttgatccaaatgcatgtggctgg 61
Query: 223 gcttatgggatgaacatctttgatctgagggagtggaagaagaaagatattactgggatc 282
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 62 gcttatgggatgaacatctttgatttgagggagtggaagaagaaagatattactgggatc 121
Query: 283 taccacaaatggcaaaat 300
||||||||||||||||||
Sbjct: 122 taccacaaatggcaaaat 139
>gb|BF585676.1|BF585676 FM1_24_C05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 494
Score = 531 bits (268), Expect = e-149
Identities = 445/500 (89%), Gaps = 11/500 (2%)
Strand = Plus / Plus
Query: 413 acaacccaagcattgaccgttcagagatagacaatgctgctgtggttcattacaatggga 472
||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 1 acaacccaagcatagaccgttcagagttagacagtgctgctgtggttcattacaatggga 60
Query: 473 acatgaagccatggctggagctagcaatgaccaagtaccgaccatattggaccaagtata 532
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acatgaagccatggttggagctagcaatgaccaagtaccgaccatattggaccaagtata 120
Query: 533 tcaagtatgatcacccttacatccgtggatgcaacttgagtgagtagatagtcgtgctga 592
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 121 tcaagtatgatcacccttacatccgtgggtgcaacttgagtgagtagatagtcgtgctg- 179
Query: 593 aaaactgacagatgaggaagagcttattggacagaagtgttccactaccatgtccttgcg 652
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 180 -aaactgacagatgaggaagagcctgttggacagaagtgttccactaccatgtccttgcg 238
Query: 653 gtgcgttattcgactcagcaaagtggtactacctcaagctcttgattgctttcctcccct 712
||||||| || || ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 239 gtgcgttctttgatacagcaaagtggtactacatgaagctcttgattgctttcctcccct 298
Query: 713 cctctc----ccaagaaaaattcaccggtggctgttctgacgagtgatgtattattatag 768
|| ||| || ||||||||| ||||| ||||||||||||| ||| || ||||||
Sbjct: 299 cccctctcctcccctgaaaattcactggtggatgttctgacgagt--tgtttttttatag 356
Query: 769 cgatgcgnnnnnnnaattcaattattagtaatatgcatttatatt-ttccgtcaaaatta 827
||||| | ||||||||||||||||| || | ||||||| | ||||||||||||
Sbjct: 357 cgatgtgttttttt-attcaattattagtaatgtgtagttatattctgccgtcaaaatta 415
Query: 828 gcaggagaaaaacttataaaatggatttgtggggctggtgtcgcgtgttgcttagaggta 887
|||||| | |||||| ||||||| || | |||||||||||||||| ||||||||||||
Sbjct: 416 gcagga-agaaacttctaaaatgtgcttatcgggctggtgtcgcgtgctgcttagaggta 474
Query: 888 tgcctagagaatcgagtgtt 907
|| ||||||||| |||||||
Sbjct: 475 tgtctagagaattgagtgtt 494
>gb|CF757149.1|CF757149 DSAF1_14_D03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_14_D03_A011 3', mRNA sequence
Length = 580
Score = 307 bits (155), Expect = 1e-081
Identities = 190/201 (94%), Gaps = 2/201 (0%)
Strand = Plus / Plus
Query: 505 aagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgtggatgc 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 aagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgtgggtgc 60
Query: 565 aacttgagtgagtagatagtcgtgctgaaaaactgacagatgaggaagagcttattggac 624
||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 61 aacttgagtgagtagatagtcgtgctg--aaactgacagatgaggaagagcctgttggac 118
Query: 625 agaagtgttccactaccatgtccttgcggtgcgttattcgactcagcaaagtggtactac 684
||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 119 agaagtgttccactaccatgtccttgcggtgcgttttttgatacagcaaagtggtactac 178
Query: 685 ctcaagctcttgattgctttc 705
|| ||||||||||||| ||||
Sbjct: 179 ctgaagctcttgattgntttc 199
Score = 163 bits (82), Expect = 4e-038
Identities = 137/154 (88%), Gaps = 1/154 (0%)
Strand = Plus / Plus
Query: 784 attcaattattagtaatatgcatttatatt-ttccgtcaaaattagcaggagaaaaactt 842
||||||||||||||||| || | ||||||| |||||||||||||||||||||||||||||
Sbjct: 287 attcaattattagtaatgtgtagttatattcttccgtcaaaattagcaggagaaaaactt 346
Query: 843 ataaaatggatttgtggggctggtgtcgcgtgttgcttagaggtatgcctagagaatcga 902
||||||| || | ||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct: 347 ctaaaatgtgcttatccggctggtgtcgcgtgctgcttagaggtatgtctagagaattga 406
Query: 903 gtgttgccggaattggatccttttttgtatcaga 936
|||||||||||||||||| | ||||||||||||
Sbjct: 407 gtgttgccggaattggattgtcttttgtatcaga 440
Score = 42.1 bits (21), Expect = 0.094
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 725 aaaattcaccggtggctgttctgacgagt 753
||||||||| ||||| |||||||||||||
Sbjct: 232 aaaattcactggtggatgttctgacgagt 260
>gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 591
Score = 165 bits (83), Expect = 9e-039
Identities = 254/311 (81%)
Strand = Plus / Plus
Query: 256 tggaagaagaaagatattactgggatctaccacaaatggcaaaatatgaatgaagacagg 315
|||||||| ||||| ||||||||||| |||||||||||||| || |||||||| |||||
Sbjct: 18 tggaagaataaagacattactgggatttaccacaaatggcagaacatgaatgagaacagg 77
Query: 316 gtcctttggaagcttgggacacttccgcctggcctcttgaccttctataagttgacgcac 375
| || ||||| || |||||| | || || || || | || || || ||| |||| |||
Sbjct: 78 ctgctctggaaactggggacattgcctccagggcttctaactttttacaagctgacacac 137
Query: 376 ccactggacaagtcatggcatgttcttggattaggatacaacccaagcattgaccgttca 435
|| |||||||| ||||||||||| ||||| ||||| ||||| |||| |||||| || |||
Sbjct: 138 cctctggacaaatcatggcatgtgcttggcttagggtacaatccaaccattgagcgctca 197
Query: 436 gagatagacaatgctgctgtggttcattacaatgggaacatgaagccatggctggagcta 495
|| |||||||||||||| || | || |||||||| ||||||||||| |||||||| |
Sbjct: 198 gaaatagacaatgctgcggtcatccactacaatggtaacatgaagccgtggctggaaatc 257
Query: 496 gcaatgaccaagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatc 555
|||||||| ||||| || || || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 258 gcaatgacaaagtatcggccttactggacaaagtacatcaattatgagcacccgtacatt 317
Query: 556 cgtggatgcaa 566
| |||||||||
Sbjct: 318 catggatgcaa 328
>gb|CW144376.1|CW144376 104_536_11137911_116_34966_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137911, DNA
sequence
Length = 547
Score = 163 bits (82), Expect = 4e-038
Identities = 137/154 (88%), Gaps = 1/154 (0%)
Strand = Plus / Minus
Query: 784 attcaattattagtaatatgcatttatatt-ttccgtcaaaattagcaggagaaaaactt 842
||||||||||||||||| || | ||||||| |||||||||||||||||||||||||||||
Sbjct: 375 attcaattattagtaatgtgtagttatattcttccgtcaaaattagcaggagaaaaactt 316
Query: 843 ataaaatggatttgtggggctggtgtcgcgtgttgcttagaggtatgcctagagaatcga 902
||||||| || | ||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct: 315 ctaaaatgtgcttatccggctggtgtcgcgtgctgcttagaggtatgtctagagaattga 256
Query: 903 gtgttgccggaattggatccttttttgtatcaga 936
|||||||||||||||||| | ||||||||||||
Sbjct: 255 gtgttgccggaattggattgtcttttgtatcaga 222
Score = 131 bits (66), Expect = 1e-028
Identities = 84/90 (93%)
Strand = Plus / Minus
Query: 620 tggacagaagtgttccactaccatgtccttgcggtgcgttattcgactcagcaaagtggt 679
|||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 547 tggacagaagtgttccactaccatgtccttgcggtgcgttctttgatacagcaaagtggt 488
Query: 680 actacctcaagctcttgattgctttcctcc 709
||||||| ||||||| ||||||||||||||
Sbjct: 487 actacctgaagctctggattgctttcctcc 458
Score = 42.1 bits (21), Expect = 0.094
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 725 aaaattcaccggtggctgttctgacgagt 753
||||||||| ||||| |||||||||||||
Sbjct: 430 aaaattcactggtggatgttctgacgagt 402
>gb|BI099257.1|BI099257 IP1_40_E11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 375
Score = 163 bits (82), Expect = 4e-038
Identities = 137/154 (88%), Gaps = 1/154 (0%)
Strand = Plus / Plus
Query: 784 attcaattattagtaatatgcatttatatt-ttccgtcaaaattagcaggagaaaaactt 842
||||||||||||||||| || | ||||||| |||||||||||||||||||||||||||||
Sbjct: 70 attcaattattagtaatgtgtagttatattcttccgtcaaaattagcaggagaaaaactt 129
Query: 843 ataaaatggatttgtggggctggtgtcgcgtgttgcttagaggtatgcctagagaatcga 902
||||||| || | ||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct: 130 ctaaaatgtgcttatccggctggtgtcgcgtgctgcttagaggtatgtctagagaattga 189
Query: 903 gtgttgccggaattggatccttttttgtatcaga 936
|||||||||||||||||| | ||||||||||||
Sbjct: 190 gtgttgccggaattggattgtcttttgtatcaga 223
Score = 42.1 bits (21), Expect = 0.094
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 725 aaaattcaccggtggctgttctgacgagt 753
||||||||| ||||| |||||||||||||
Sbjct: 15 aaaattcactggtggatgttctgacgagt 43
>gb|CF483811.1|CF483811 POL1_24_G11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_24_G11_A002 5', mRNA sequence
Length = 401
Score = 155 bits (78), Expect = 9e-036
Identities = 136/154 (88%), Gaps = 1/154 (0%)
Strand = Plus / Minus
Query: 784 attcaattattagtaatatgcatttatatt-ttccgtcaaaattagcaggagaaaaactt 842
||||||||||||||||| || | ||||||| |||||||||||||||||||||||||||||
Sbjct: 314 attcaattattagtaatgtgtagttatattcttccgtcaaaattagcaggagaaaaactt 255
Query: 843 ataaaatggatttgtggggctggtgtcgcgtgttgcttagaggtatgcctagagaatcga 902
||||||| || | ||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct: 254 ctaaaatgtgcttatccggctggtgtcgcgtgctgcttagaggtatgtctagagaattga 195
Query: 903 gtgttgccggaattggatccttttttgtatcaga 936
||||||||||||||||| | ||||||||||||
Sbjct: 194 gtgttgccggaattggaatgtcttttgtatcaga 161
Score = 42.1 bits (21), Expect = 0.094
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 725 aaaattcaccggtggctgttctgacgagt 753
||||||||| ||||| |||||||||||||
Sbjct: 369 aaaattcactggtggatgttctgacgagt 341
>gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 612
Score = 141 bits (71), Expect = 1e-031
Identities = 167/199 (83%)
Strand = Plus / Plus
Query: 368 tgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcattg 427
|||| ||||| |||||||| ||||||||||| ||||| ||||| ||||| |||| |||||
Sbjct: 126 tgacacaccctctggacaaatcatggcatgtgcttggcttagggtacaatccaaccattg 185
Query: 428 accgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatggc 487
| || |||||||||||||||||||| || | || |||||||| ||||||||||| ||||
Sbjct: 186 agcgctcagagatagacaatgctgcggtcatccactacaatggtaacatgaagccgtggc 245
Query: 488 tggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatgatcacc 547
|||| | |||||||| ||||| || || || ||||| ||||| ||||| ||||| ||||
Sbjct: 246 tggaaatcgcaatgacaaagtatcggccttactggacaaagtacatcaattatgagcacc 305
Query: 548 cttacatccgtggatgcaa 566
| ||||| | |||||||||
Sbjct: 306 cgtacattcatggatgcaa 324
>gb|BM326723.1|BM326723 PIC1_1_H10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 366
Score = 131 bits (66), Expect = 1e-028
Identities = 133/154 (86%), Gaps = 1/154 (0%)
Strand = Plus / Plus
Query: 784 attcaattattagtaatatgcatttatatt-ttccgtcaaaattagcaggagaaaaactt 842
||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||
Sbjct: 75 attcaattattagtaatgggtagttatattcttccgtcaaaattagcaggagaaaaactt 134
Query: 843 ataaaatggatttgtggggctggtgtcgcgtgttgcttagaggtatgcctagagaatcga 902
||||||| || | ||||||||||||||| |||||| ||||||| |||| ||| ||
Sbjct: 135 ttaaaatgtgcttatccggctggtgtcgcgtgctgcttaaaggtatgtttagaaaattga 194
Query: 903 gtgttgccggaattggatccttttttgtatcaga 936
||||| |||||||||||| ||||||||||||||
Sbjct: 195 gtgttcccggaattggattgttttttgtatcaga 228
>gb|CL193723.1|CL193723 104_417_10941134_116_32279_053 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941134, DNA
sequence
Length = 686
Score = 127 bits (64), Expect = 2e-027
Identities = 133/156 (85%)
Strand = Plus / Plus
Query: 141 gagttttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactt 200
||||||||| || |||||||| || || ||||| ||||| ||| | ||| ||| ||| ||
Sbjct: 40 gagttttcatcgatttgacaagtacctcaatttctcaaacccaaatatttctcagaattt 99
Query: 201 tgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaa 260
|||||| ||||||||||| ||||||||||| |||||||| ||||||||| || |||||
Sbjct: 100 tgatcctaatgcatgtggttgggcttatggaatgaacatgtttgatctggaagaatggaa 159
Query: 261 gaagaaagatattactgggatctaccacaaatggca 296
||| ||||| ||||||||||| ||||||||||||||
Sbjct: 160 gaataaagacattactgggatttaccacaaatggca 195
>gb|CW285992.1|CW285992 104_763_11410641_148_35507_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 694
Score = 127 bits (64), Expect = 2e-027
Identities = 165/199 (82%)
Strand = Plus / Minus
Query: 368 tgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcattg 427
|||| ||||| |||||||| ||||||||||| ||||| ||||| ||||| |||| |||
Sbjct: 681 tgacacaccctctggacaaatcatggcatgtgcttggcttagggtacaatccaaccatgn 622
Query: 428 accgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatggc 487
| || |||||||||||||||||||| || | || |||||||| ||||||||||| ||||
Sbjct: 621 agcgctcagagatagacaatgctgcggtcatccactacaatggtaacatgaagccgtggc 562
Query: 488 tggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatgatcacc 547
|||| | |||||||| ||||| || || || ||||| ||||| ||||| ||||| ||||
Sbjct: 561 tggaaatcgcaatgacaaagtatcggccttactggacaaagtacatcaattatgagcacc 502
Query: 548 cttacatccgtggatgcaa 566
| ||||| | |||||||||
Sbjct: 501 cgtacattcatggatgcaa 483
>gb|CF480371.1|CF480371 POL1_65_H05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_H05_A002 3', mRNA sequence
Length = 430
Score = 123 bits (62), Expect = 3e-026
Identities = 155/186 (83%)
Strand = Plus / Plus
Query: 381 ggacaagtcatggcatgttcttggattaggatacaacccaagcattgaccgttcagagat 440
|||||| ||||||||||| ||||| ||||| ||||| |||| |||||| || ||||||||
Sbjct: 1 ggacaaatcatggcatgtgcttggcttagggtacaatccaaccattgagcgctcagagat 60
Query: 441 agacaatgctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaat 500
|||||||||||| || | || |||||||| ||||||||||| |||||||| | |||||
Sbjct: 61 agacaatgctgcggtcatccactacaatggtaacatgaagccgtggctggaaatcgcaat 120
Query: 501 gaccaagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgtgg 560
||| ||||| || || || ||||| ||||| ||||| ||||| | ||| ||||| | |||
Sbjct: 121 gacaaagtatcggccttactggacaaagtacatcaattatgagcccccgtacattcatgg 180
Query: 561 atgcaa 566
||||||
Sbjct: 181 atgcaa 186
>gb|CF482490.1|CF482490 POL1_7_F08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_7_F08_A002 3', mRNA sequence
Length = 521
Score = 56.0 bits (28), Expect = 6e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 445 aatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||||||||| || |||| |||||||||||||||||| |||||
Sbjct: 65 aatgctgctgttgtgcatttcaatgggaacatgaagccctggct 108
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 391 tggcatgttcttggattaggatacaacccaagcat 425
||||||||||||||| | |||||||| ||||||||
Sbjct: 11 tggcatgttcttggacttggatacaatccaagcat 45
>gb|CL197598.1|CL197598 104_424_10943847_114_32384_054 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943847, DNA
sequence
Length = 643
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 445 aatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||||||||| || |||| |||||| ||||||||||| |||||
Sbjct: 40 aatgctgctgttgtgcatttcaatggcaacatgaagccctggct 83
>gb|CW082577.1|CW082577 104_424_10943847_114_32335_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943847, DNA
sequence
Length = 635
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 445 aatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||||||||| || |||| |||||| ||||||||||| |||||
Sbjct: 39 aatgctgctgttgtgcatttcaatggcaacatgaagccctggct 82
>gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 445 aatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||||||||| || |||| |||||| ||||||||||| |||||
Sbjct: 223 aatgctgctgttgtgcatttcaatggcaacatgaagccctggct 266
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 391 tggcatgttcttggattaggatacaacccaagcat 425
||||||||||||||| | |||||||| ||||||||
Sbjct: 169 tggcatgttcttggacttggatacaatccaagcat 203
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 445 aatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||||||||| || |||| |||||| ||||||||||| |||||
Sbjct: 519 aatgctgctgttgtgcatttcaatggcaacatgaagccctggct 562
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 391 tggcatgttcttggattaggatacaacccaagcat 425
||||||||||||||| | |||||||| ||||||||
Sbjct: 465 tggcatgttcttggacttggatacaatccaagcat 499
>gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F10_A002 3', mRNA sequence
Length = 807
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 445 aatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||||||||| || |||| |||||| ||||||||||| |||||
Sbjct: 416 aatgctgctgttgtgcatttcaatggcaacatgaagccctggct 459
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 391 tggcatgttcttggattaggatacaacccaagcat 425
||||||||||||||| | |||||||| ||||||||
Sbjct: 362 tggcatgttcttggacttggatacaatccaagcat 396
>gb|CW306008.1|CW306008 104_791_11466607_148_36273_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466607, DNA
sequence
Length = 675
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 469 gggaacatgaagccatggctgga 491
|||||||||||||||||||||||
Sbjct: 120 gggaacatgaagccatggctgga 98
>gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_14_F12_A002 5', mRNA sequence
Length = 692
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 391 tggcatgttcttggattaggatacaacccaagcat 425
||||||||||||||| | |||||||| ||||||||
Sbjct: 488 tggcatgttcttggacttggatacaatccaagcat 454
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 445 aatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||||||||| || |||| |||||| || |||||||| |||||
Sbjct: 434 aatgctgctgttgtgcatttcaatggcaatatgaagccctggct 391
>gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 596
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 436 gagatagacaatgctgctgtggttcattacaatgggaa 473
||||| || |||||||| || |||||||||||||||||
Sbjct: 158 gagatcgataatgctgcagtagttcattacaatgggaa 195
>gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_17_C07_A012 3', mRNA sequence
Length = 683
Score = 44.1 bits (22), Expect = 0.024
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 447 tgctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaat 500
||||||||| || || || |||||||||||||| || |||||| |||| |||||
Sbjct: 230 tgctgctgttgtgcactataatgggaacatgaaaccctggctgaagctggcaat 283
>gb|CD431168.1|CD431168 ETH1_7_B07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_7_B07_A002 3', mRNA sequence
Length = 496
Score = 44.1 bits (22), Expect = 0.024
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 447 tgctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaat 500
||||||||| || || || |||||||||||||| || |||||| |||| |||||
Sbjct: 40 tgctgctgttgtgcactataatgggaacatgaaaccctggctgaagctggcaat 93
>gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_23_D06_A002 3', mRNA sequence
Length = 814
Score = 44.1 bits (22), Expect = 0.024
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 447 tgctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaat 500
||||||||| || || || |||||||||||||| || |||||| |||| |||||
Sbjct: 351 tgctgctgttgtgcactataatgggaacatgaaaccctggctgaagctggcaat 404
>gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_5_C04_A002 3', mRNA sequence
Length = 762
Score = 44.1 bits (22), Expect = 0.024
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 447 tgctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaat 500
||||||||| || || || |||||||||||||| || |||||| |||| |||||
Sbjct: 309 tgctgctgttgtgcactataatgggaacatgaaaccctggctgaagctggcaat 362
>gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 628
Score = 42.1 bits (21), Expect = 0.094
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 460 cattacaatgggaacatgaagccatggct 488
||||||||||| ||||||||||| |||||
Sbjct: 168 cattacaatggcaacatgaagccctggct 196
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 42.1 bits (21), Expect = 0.094
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 949 agtacctgcccgggcggccgc 969
|||||||||||||||||||||
Sbjct: 191 agtacctgcccgggcggccgc 211
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 223 gtacctgcccgggcggccgc 204
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 244 gtacctgcccgggcggccgc 225
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 112
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 21 gtacctgcccgggcggccgc 2
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgc 32
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 65 gtacctgcccgggcggccgc 84
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 100 gtacctgcccgggcggccgc 119
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 2 gtacctgcccgggcggccgc 21
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 233,744
Number of Sequences: 832831
Number of extensions: 233744
Number of successful extensions: 65454
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65381
Number of HSP's gapped (non-prelim): 57
length of query: 969
length of database: 491,359,669
effective HSP length: 20
effective length of query: 949
effective length of database: 474,703,049
effective search space: 450493193501
effective search space used: 450493193501
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)