BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS4f06.yg.3.1
(768 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW485609.1|CW485609 fsbb001f248h04k0 Sorghum methylation... 305 3e-081
gb|BZ338604.1|BZ338604 ia96e11.g1 WGS-SbicolorF (JM107 adap... 174 8e-042
gb|DR831560.2|DR831560 MT16 Sorghum bicolor greenbug-respon... 149 4e-034
gb|CW048032.1|CW048032 104_286_10513032_115_30215 Sorghum m... 66 5e-009
>gb|CW485609.1|CW485609 fsbb001f248h04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f248h04, DNA
sequence
Length = 728
Score = 305 bits (154), Expect = 3e-081
Identities = 264/298 (88%), Gaps = 2/298 (0%)
Strand = Plus / Plus
Query: 468 tgccatccattccaactacgattccaacaacaatccctaccattcccggactccaggtgc 527
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 15 tgccatccattccaactacgattccaacaacaatcccaaccattcccggactccaggtgc 74
Query: 528 ctccattcaccgccccatccccacaaaccaccagcccttgaagttcgatgtagcaggaga 587
||||| ||||||||||||||||||||||||||| |||||||| || | | ||| ||||
Sbjct: 75 ctccactcaccgccccatccccacaaaccaccaacccttgaaatttg-tctagtgagaga 133
Query: 588 cttttctttacatgctgttagtcaggagtttggctcatcgtatatggtcgttttcagtgt 647
||||| ||| | |||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct: 134 tttttc-ttattttctgttagtcaggagtttgattcatcgtatattgtcattttcagtgt 192
Query: 648 gtgtgccatgtttgttctgctattttgatgatagtggctagcatgtggtgtgcttgtgat 707
|| || |||||||| |||||||||| | |||| |||||||||||||||||| ||||||
Sbjct: 193 gtatgtcatgtttgctctgctatttgggtgatcttggctagcatgtggtgtgattgtgaa 252
Query: 708 tgcagccagtctattgtacctctttgttttgctgttattgaagtattacttggtcttt 765
|||||||||||||||||||| ||||| ||||||||| | |||||||||||| |||||
Sbjct: 253 tgcagccagtctattgtaccattttgtcttgctgttaataaagtattacttgttcttt 310
>gb|BZ338604.1|BZ338604 ia96e11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia96e11 5', DNA sequence
Length = 573
Score = 174 bits (88), Expect = 8e-042
Identities = 145/164 (88%)
Strand = Plus / Plus
Query: 602 ctgttagtcaggagtttggctcatcgtatatggtcgttttcagtgtgtgtgccatgtttg 661
|||||||||||||||||| ||||||||||| ||| |||||||||||| || ||||||||
Sbjct: 43 ctgttagtcaggagtttgattcatcgtatattgtcattttcagtgtgtatgtcatgtttg 102
Query: 662 ttctgctattttgatgatagtggctagcatgtggtgtgcttgtgattgcagccagtctat 721
|||||||||| | |||| |||||||||||||||||| |||||| ||||||||||||||
Sbjct: 103 ctctgctatttgggtgatcttggctagcatgtggtgtgattgtgaatgcagccagtctat 162
Query: 722 tgtacctctttgttttgctgttattgaagtattacttggtcttt 765
|||||| ||||| ||||||||| | |||||||||||| |||||
Sbjct: 163 tgtaccattttgtcttgctgttaataaagtattacttgttcttt 206
>gb|DR831560.2|DR831560 MT16 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 201
Score = 149 bits (75), Expect = 4e-034
Identities = 174/203 (85%), Gaps = 3/203 (1%)
Strand = Plus / Minus
Query: 523 ggtgcctccattcaccgccccatcccc-acaaaccaccagcccttgaagttcgatgtagc 581
|||||||||| |||| ||||||||||| ||||||||||| |||||||| || | | |||
Sbjct: 201 ggtgcctccactcactgccccatcccccacaaaccaccaacccttgaaatttg-tctagt 143
Query: 582 aggagacttttctttacatgctgttagtcaggagtttggctcatcgtatatggtcgtttt 641
|||| ||||||| | | |||||||||||||||||| ||||||||||| ||| ||||
Sbjct: 142 gagagatttttctt-attttctgttagtcaggagtttgattcatcgtatattgtcatttt 84
Query: 642 cagtgtgtgtgccatgtttgttctgctattttgatgatagtggctagcatgtggtgtgct 701
|||||||| || |||||||| |||||||||| | |||| |||||||||||||||||| |
Sbjct: 83 cagtgtgtatgtcatgtttgctctgctatttgggtgatcttggctagcatgtggtgtgat 24
Query: 702 tgtgattgcagccagtctattgt 724
||||| |||||||||||||||||
Sbjct: 23 tgtgaatgcagccagtctattgt 1
>gb|CW048032.1|CW048032 104_286_10513032_115_30215 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513032, DNA
sequence
Length = 318
Score = 65.9 bits (33), Expect = 5e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 701 ttgtgattgcagccagtctattgtacctctttgttttgctgttattgaagtattacttgg 760
|||||| |||||||||||||||||||| ||||| |||| |||| | |||||||||| ||
Sbjct: 316 ttgtgaatgcagccagtctattgtaccattttgtcttgccgttaataaagtattactcgg 257
Query: 761 tcttt 765
|||||
Sbjct: 256 tcttt 252
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,228
Number of Sequences: 832831
Number of extensions: 176228
Number of successful extensions: 47691
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47684
Number of HSP's gapped (non-prelim): 6
length of query: 768
length of database: 491,359,669
effective HSP length: 20
effective length of query: 748
effective length of database: 474,703,049
effective search space: 355077880652
effective search space used: 355077880652
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)