BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAO3g02.yg.2.1
(344 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW745683.1|AW745683 WS1_36_B11.g1_A002 Water-stressed 1 ... 212 2e-053
gb|AW746681.1|AW746681 WS1_54_H03.g1_A002 Water-stressed 1 ... 212 2e-053
gb|AW677678.1|AW677678 WS1_10_F06.b1_A002 Water-stressed 1 ... 204 4e-051
gb|AW680764.1|AW680764 WS1_7_B09.b1_A002 Water-stressed 1 (... 204 4e-051
gb|BM331418.1|BM331418 PIC1_65_H04.g1_A002 Pathogen-infecte... 204 4e-051
gb|CD208906.1|CD208906 HS1_45_A03.b1_A012 Heat-shocked seed... 204 4e-051
gb|CD210972.1|CD210972 HS1_58_D09.b1_A012 Heat-shocked seed... 204 4e-051
gb|CD211415.1|CD211415 HS1_60_B03.b1_A012 Heat-shocked seed... 204 4e-051
gb|CD211575.1|CD211575 HS1_63_F12.b1_A012 Heat-shocked seed... 204 4e-051
gb|CD212152.1|CD212152 HS1_71_G04.b1_A012 Heat-shocked seed... 204 4e-051
gb|CD213035.1|CD213035 HS1_28_E12.b1_A012 Heat-shocked seed... 204 4e-051
gb|CD229164.1|CD229164 CCC1_13_B11.b1_A007 Callus culture/c... 204 4e-051
gb|CD229180.1|CD229180 CCC1_13_B11.g1_A007 Callus culture/c... 204 4e-051
gb|CD462225.1|CD462225 SA1_40_H09.b1_A002 Salicylic acid-tr... 204 4e-051
gb|CN129758.1|CN129758 RHOH1_37_F03.b1_A002 Acid- and alkal... 204 4e-051
gb|CN130862.1|CN130862 RHOH1_44_G05.b1_A002 Acid- and alkal... 204 4e-051
gb|CN135327.1|CN135327 OX1_32_C03.b1_A002 Oxidatively-stres... 204 4e-051
gb|BG947645.1|BG947645 IP1_7_C11.g1_A002 Immature pannicle ... 184 3e-045
gb|CD209681.1|CD209681 HS1_54_F10.b1_A012 Heat-shocked seed... 180 5e-044
gb|CD212142.1|CD212142 HS1_71_F02.b1_A012 Heat-shocked seed... 178 2e-043
gb|CD209515.1|CD209515 HS1_43_D01.b1_A012 Heat-shocked seed... 172 1e-041
gb|CF430329.1|CF430329 PH1_27_A10.g1_A002 Phosphorous-defic... 167 8e-040
gb|CL167684.1|CL167684 104_364_10810249_116_31803_313 Sorgh... 165 3e-039
gb|CL173030.1|CL173030 104_376_10890597_116_31795_117 Sorgh... 165 3e-039
gb|CW468255.1|CW468255 fsbb001f220f12f0 Sorghum methylation... 165 3e-039
gb|CW209293.1|CW209293 104_639_11189160_116_36988_092 Sorgh... 157 8e-037
gb|CL167683.1|CL167683 104_364_10810249_114_31802_313 Sorgh... 131 5e-029
gb|CW110903.1|CW110903 104_484_11103992_148_34526_032 Sorgh... 105 3e-021
gb|CF756594.1|CF756594 DSAF1_6_B04.g1_A011 Drought-stressed... 100 2e-019
gb|CF757158.1|CF757158 DSAF1_14_E03.g1_A011 Drought-stresse... 100 2e-019
gb|CF430276.1|CF430276 PH1_27_A10.b1_A002 Phosphorous-defic... 90 2e-016
>gb|AW745683.1|AW745683 WS1_36_B11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 647
Score = 212 bits (107), Expect = 2e-053
Identities = 128/137 (93%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 225 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 284
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 285 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 344
Query: 305 cccgcnagatttgaagt 321
||||| |||||||||||
Sbjct: 345 cccgccagatttgaagt 361
Score = 174 bits (88), Expect = 3e-042
Identities = 109/117 (93%)
Strand = Plus / Plus
Query: 15 gtacttgttcgattcgacaaatgatgtttccgtcctgccttnnngtcataccattcatgt 74
|||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 55 gtacttgttcgagtcgacgaatgatgtttctgtcctgccttgtggtcataccattcatgt 114
Query: 75 aaagtgcctgaaagaaatggaagagcactgccagtttgcatgccccctttgctccaa 131
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 115 aaagtgcctcaaagaaatggaggagcactgccagtttgcatgccccctttgctccaa 171
>gb|AW746681.1|AW746681 WS1_54_H03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 547
Score = 212 bits (107), Expect = 2e-053
Identities = 128/137 (93%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 127 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 186
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 187 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 246
Query: 305 cccgcnagatttgaagt 321
||||| |||||||||||
Sbjct: 247 cccgccagatttgaagt 263
Score = 129 bits (65), Expect = 2e-028
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 59 gtcataccattcatgtaaagtgcctgaaagaaatggaagagcactgccagtttgcatgcc 118
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 1 gtcataccattcatgtaaagtgcctcaaagaaatggaggagcactgccagtttgcatgcc 60
Query: 119 ccctttgctccaa 131
|||||||||||||
Sbjct: 61 ccctttgctccaa 73
>gb|AW677678.1|AW677678 WS1_10_F06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 595
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 334 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 393
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 394 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 453
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 454 cccgccagatctgaagt 470
Score = 127 bits (64), Expect = 7e-028
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 15 gtacttgttcgattcgacaaatgatgtttccgtcctgccttnnngtcataccattcatgt 74
|||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 189 gtacttgttcgagtcgacgaatgatgtttctgtcctgccttgtggtcataccattcatgt 248
Query: 75 aaagtgcctgaaagaaatggaagagcactgcca 107
||||||||| ||||||||||| |||||||||||
Sbjct: 249 aaagtgcctcaaagaaatggaggagcactgcca 281
>gb|AW680764.1|AW680764 WS1_7_B09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 135 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 194
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 195 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 254
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 255 cccgccagatctgaagt 271
Score = 129 bits (65), Expect = 2e-028
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 59 gtcataccattcatgtaaagtgcctgaaagaaatggaagagcactgccagtttgcatgcc 118
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 9 gtcataccattcatgtaaagtgcctcaaagaaatggaggagcactgccagtttgcatgcc 68
Query: 119 ccctttgctccaa 131
|||||||||||||
Sbjct: 69 ccctttgctccaa 81
>gb|BM331418.1|BM331418 PIC1_65_H04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 541
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 57 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 116
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 117 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 176
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 177 cccgccagatctgaagt 193
>gb|CD208906.1|CD208906 HS1_45_A03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_45_A03_A012 3', mRNA sequence
Length = 522
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 58 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 117
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 118 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 177
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 178 cccgccagatctgaagt 194
>gb|CD210972.1|CD210972 HS1_58_D09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_D09_A012 3', mRNA sequence
Length = 730
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 120 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 179
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 180 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 239
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 240 cccgccagatctgaagt 256
Score = 115 bits (58), Expect = 3e-024
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 66 cattcatgtaaagtgcctgaaagaaatggaagagcactgccagtttgcatgccccctttg 125
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 cattcatgtaaagtgcctcaaagaaatggaggagcactgccagtttgcatgccccctttg 60
Query: 126 ctccaa 131
||||||
Sbjct: 61 ctccaa 66
>gb|CD211415.1|CD211415 HS1_60_B03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_60_B03_A012 3', mRNA sequence
Length = 734
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 102 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 161
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 162 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 221
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 222 cccgccagatctgaagt 238
Score = 85.7 bits (43), Expect = 2e-015
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 85 aaagaaatggaagagcactgccagtttgcatgccccctttgctccaa 131
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2 aaagaaatggaggagcactgccagtttgcatgccccctttgctccaa 48
>gb|CD211575.1|CD211575 HS1_63_F12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_63_F12_A012 3', mRNA sequence
Length = 757
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 125 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 184
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 185 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 244
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 245 cccgccagatctgaagt 261
Score = 125 bits (63), Expect = 3e-027
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 61 cataccattcatgtaaagtgcctgaaagaaatggaagagcactgccagtttgcatgcccc 120
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1 cataccattcatgtaaagtgcctcaaagaaatggaggagcactgccagtttgcatgcccc 60
Query: 121 ctttgctccaa 131
|||||||||||
Sbjct: 61 ctttgctccaa 71
>gb|CD212152.1|CD212152 HS1_71_G04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_71_G04_A012 3', mRNA sequence
Length = 628
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 127 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 186
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 187 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 246
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 247 cccgccagatctgaagt 263
Score = 129 bits (65), Expect = 2e-028
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 59 gtcataccattcatgtaaagtgcctgaaagaaatggaagagcactgccagtttgcatgcc 118
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 1 gtcataccattcatgtaaagtgcctcaaagaaatggaggagcactgccagtttgcatgcc 60
Query: 119 ccctttgctccaa 131
|||||||||||||
Sbjct: 61 ccctttgctccaa 73
>gb|CD213035.1|CD213035 HS1_28_E12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_28_E12_A012 3', mRNA sequence
Length = 700
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 230 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 289
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 290 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 349
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 350 cccgccagatctgaagt 366
Score = 167 bits (84), Expect = 8e-040
Identities = 108/117 (92%)
Strand = Plus / Plus
Query: 15 gtacttgttcgattcgacaaatgatgtttccgtcctgccttnnngtcataccattcatgt 74
|||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 60 gtacttgttcgagtcgacgaatgatgtttctgtcctgccttgtggtcataccattcatgt 119
Query: 75 aaagtgcctgaaagaaatggaagagcactgccagtttgcatgccccctttgctccaa 131
||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 120 aaagtgcctcaaagaaatggaggagcactgccagtttgcatgcgccctttgctccaa 176
>gb|CD229164.1|CD229164 CCC1_13_B11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_B11_A007 3', mRNA sequence
Length = 638
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 172 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 231
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 232 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 291
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 292 cccgccagatctgaagt 308
Score = 167 bits (84), Expect = 8e-040
Identities = 108/117 (92%)
Strand = Plus / Plus
Query: 15 gtacttgttcgattcgacaaatgatgtttccgtcctgccttnnngtcataccattcatgt 74
|||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 2 gtacttgttcgagtcgacgaatgatgtttctgtcctgccttgtggtcataccattcatgt 61
Query: 75 aaagtgcctgaaagaaatggaagagcactgccagtttgcatgccccctttgctccaa 131
||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 62 aaagtgcctcaaagaaatggaggagcactgccagtttgcatgccccctttgttccaa 118
>gb|CD229180.1|CD229180 CCC1_13_B11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_B11_A007 5', mRNA sequence
Length = 654
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 415 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 474
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 475 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 534
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 535 cccgccagatctgaagt 551
Score = 167 bits (84), Expect = 8e-040
Identities = 108/117 (92%)
Strand = Plus / Plus
Query: 15 gtacttgttcgattcgacaaatgatgtttccgtcctgccttnnngtcataccattcatgt 74
|||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 245 gtacttgttcgagtcgacgaatgatgtttctgtcctgccttgtggtcataccattcatgt 304
Query: 75 aaagtgcctgaaagaaatggaagagcactgccagtttgcatgccccctttgctccaa 131
||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 305 aaagtgcctcaaagaaatggaggagcactgccagtttgcatgccccctttgttccaa 361
>gb|CD462225.1|CD462225 SA1_40_H09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_40_H09_A002 3', mRNA sequence
Length = 690
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 58 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 117
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 118 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 177
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 178 cccgccagatctgaagt 194
>gb|CN129758.1|CN129758 RHOH1_37_F03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_37_F03_A002 3', mRNA sequence
Length = 832
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 332 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 391
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 392 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 451
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 452 cccgccagatctgaagt 468
Score = 174 bits (88), Expect = 3e-042
Identities = 109/117 (93%)
Strand = Plus / Plus
Query: 15 gtacttgttcgattcgacaaatgatgtttccgtcctgccttnnngtcataccattcatgt 74
|||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 162 gtacttgttcgagtcgacgaatgatgtttctgtcctgccttgtggtcataccattcatgt 221
Query: 75 aaagtgcctgaaagaaatggaagagcactgccagtttgcatgccccctttgctccaa 131
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 222 aaagtgcctcaaagaaatggaggagcactgccagtttgcatgccccctttgctccaa 278
>gb|CN130862.1|CN130862 RHOH1_44_G05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_44_G05_A002 3', mRNA sequence
Length = 764
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 268 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 327
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 328 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 387
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 388 cccgccagatctgaagt 404
Score = 174 bits (88), Expect = 3e-042
Identities = 109/117 (93%)
Strand = Plus / Plus
Query: 15 gtacttgttcgattcgacaaatgatgtttccgtcctgccttnnngtcataccattcatgt 74
|||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 98 gtacttgttcgagtcgacgaatgatgtttctgtcctgccttgtggtcataccattcatgt 157
Query: 75 aaagtgcctgaaagaaatggaagagcactgccagtttgcatgccccctttgctccaa 131
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 158 aaagtgcctcaaagaaatggaggagcactgccagtttgcatgccccctttgctccaa 214
>gb|CN135327.1|CN135327 OX1_32_C03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_32_C03_A002 3', mRNA sequence
Length = 605
Score = 204 bits (103), Expect = 4e-051
Identities = 127/137 (92%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaa 244
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 127 ctctgtctgactcctgtgatgataaaatggtccgcatattatgcaacgactgcggggcta 186
Query: 245 tatcagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaaca 304
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 187 tatcagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaaca 246
Query: 305 cccgcnagatttgaagt 321
||||| |||| ||||||
Sbjct: 247 cccgccagatctgaagt 263
Score = 129 bits (65), Expect = 2e-028
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 59 gtcataccattcatgtaaagtgcctgaaagaaatggaagagcactgccagtttgcatgcc 118
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 1 gtcataccattcatgtaaagtgcctcaaagaaatggaggagcactgccagtttgcatgcc 60
Query: 119 ccctttgctccaa 131
|||||||||||||
Sbjct: 61 ccctttgctccaa 73
>gb|BG947645.1|BG947645 IP1_7_C11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 624
Score = 184 bits (93), Expect = 3e-045
Identities = 117/127 (92%)
Strand = Plus / Plus
Query: 195 ctcctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaatatcagatgt 254
|||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 ctcctgtgatgataaaatggtccgcatattatgcaacgactgcggggctatatcagatgt 60
Query: 255 gcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaacacccgcnagat 314
|||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||
Sbjct: 61 gcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaacacccgccagat 120
Query: 315 ttgaagt 321
||||||
Sbjct: 121 ctgaagt 127
>gb|CD209681.1|CD209681 HS1_54_F10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_54_F10_A012 3', mRNA sequence
Length = 610
Score = 180 bits (91), Expect = 5e-044
Identities = 115/125 (92%)
Strand = Plus / Plus
Query: 197 cctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaatatcagatgtgc 256
|||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 cctgtgatgataaaatggtccgcatattatgcaacgactgcggggctatatcagatgtgc 60
Query: 257 agttccatttgattgcgcacaagtgccagaatnnnnantcatacaacacccgcnagattt 316
||||||||||||||||||||||||||| |||| | ||||||||||||||| ||||||
Sbjct: 61 agttccatttgattgcgcacaagtgccggaattgcaagtcatacaacacccgccagattt 120
Query: 317 gaagt 321
|||||
Sbjct: 121 gaagt 125
>gb|CD212142.1|CD212142 HS1_71_F02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_71_F02_A012 3', mRNA sequence
Length = 658
Score = 178 bits (90), Expect = 2e-043
Identities = 114/124 (91%)
Strand = Plus / Plus
Query: 198 ctgtgatcacaaaatggtccgcatattatgcaacgactgcggggcaatatcagatgtgca 257
||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 ctgtgatgataaaatggtccgcatattatgcaacgactgcggggctatatcagatgtgca 60
Query: 258 gttccatttgattgcgcacaagtgccagaatnnnnantcatacaacacccgcnagatttg 317
||||||||||||||||||||||||||||||| | ||||||||||||||| |||| ||
Sbjct: 61 gttccatttgattgcgcacaagtgccagaattgcaagtcatacaacacccgccagatctg 120
Query: 318 aagt 321
||||
Sbjct: 121 aagt 124
>gb|CD209515.1|CD209515 HS1_43_D01.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_43_D01_A012 3', mRNA sequence
Length = 600
Score = 172 bits (87), Expect = 1e-041
Identities = 105/113 (92%)
Strand = Plus / Plus
Query: 209 aaatggtccgcatattatgcaacgactgcggggcaatatcagatgtgcagttccatttga 268
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 aaatggtccgcatattatgcaacgactgcggggctatatcagatgtgcagttccatttga 60
Query: 269 ttgcgcacaagtgccagaatnnnnantcatacaacacccgcnagatttgaagt 321
|||||||||||||||||||| | ||||||||||||||| |||| ||||||
Sbjct: 61 ttgcgcacaagtgccagaattgcaagtcatacaacacccgccagatctgaagt 113
>gb|CF430329.1|CF430329 PH1_27_A10.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_A10_A002 5', mRNA sequence
Length = 770
Score = 167 bits (84), Expect = 8e-040
Identities = 108/117 (92%)
Strand = Plus / Plus
Query: 15 gtacttgttcgattcgacaaatgatgtttccgtcctgccttnnngtcataccattcatgt 74
|||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 642 gtacttgttcgagtcgacgaatgatgtttctgtcctgccttgtggtcataccattcatgt 701
Query: 75 aaagtgcctgaaagaaatggaagagcactgccagtttgcatgccccctttgctccaa 131
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 702 aaagtgccccaaagaaatggaggagcactgccagtttgcatgccccctttgctccaa 758
>gb|CL167684.1|CL167684 104_364_10810249_116_31803_313 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810249, DNA
sequence
Length = 757
Score = 165 bits (83), Expect = 3e-039
Identities = 101/109 (92%)
Strand = Plus / Minus
Query: 213 ggtccgcatattatgcaacgactgcggggcaatatcagatgtgcagttccatttgattgc 272
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 405 ggtccgcatattatgcaacgactgcggggctatatcagatgtgcagttccatttgattgc 346
Query: 273 gcacaagtgccagaatnnnnantcatacaacacccgcnagatttgaagt 321
|||||||||||||||| | ||||||||||||||| |||| ||||||
Sbjct: 345 gcacaagtgccagaattgcaagtcatacaacacccgccagatctgaagt 297
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 108 gtttgcatgccccctttgctccaa 131
||||||||||||||||||||||||
Sbjct: 704 gtttgcatgccccctttgctccaa 681
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 185 ctctgtctgactcctgtgatcacaaaatggt 215
|||||||||||||||||||| | ||||||||
Sbjct: 627 ctctgtctgactcctgtgatgataaaatggt 597
>gb|CL173030.1|CL173030 104_376_10890597_116_31795_117 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890597, DNA
sequence
Length = 751
Score = 165 bits (83), Expect = 3e-039
Identities = 101/109 (92%)
Strand = Plus / Minus
Query: 213 ggtccgcatattatgcaacgactgcggggcaatatcagatgtgcagttccatttgattgc 272
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 170 ggtccgcatattatgcaacgactgcggggctatatcagatgtgcagttccatttgattgc 111
Query: 273 gcacaagtgccagaatnnnnantcatacaacacccgcnagatttgaagt 321
|||||||||||||||| | ||||||||||||||| |||| ||||||
Sbjct: 110 gcacaagtgccagaattgcaagtcatacaacacccgccagatctgaagt 62
Score = 131 bits (66), Expect = 5e-029
Identities = 87/95 (91%)
Strand = Plus / Minus
Query: 15 gtacttgttcgattcgacaaatgatgtttccgtcctgccttnnngtcataccattcatgt 74
|||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 637 gtacttgttcgagtcgacgaatgatgtttctgtcctgccttgtggtcataccattcatgt 578
Query: 75 aaagtgcctgaaagaaatggaagagcactgccagt 109
||||||||| ||||||||||| |||||||||||||
Sbjct: 577 aaagtgcctcaaagaaatggaggagcactgccagt 543
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 108 gtttgcatgccccctttgctccaa 131
||||||||||||||||||||||||
Sbjct: 469 gtttgcatgccccctttgctccaa 446
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 185 ctctgtctgactcctgtgatcacaaaatggt 215
|||||||||||||||||||| | ||||||||
Sbjct: 392 ctctgtctgactcctgtgatgataaaatggt 362
>gb|CW468255.1|CW468255 fsbb001f220f12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f220f12, DNA
sequence
Length = 675
Score = 165 bits (83), Expect = 3e-039
Identities = 101/109 (92%)
Strand = Plus / Plus
Query: 213 ggtccgcatattatgcaacgactgcggggcaatatcagatgtgcagttccatttgattgc 272
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 214 ggtccgcatattatgcaacgactgcggggctatatcagatgtgcagttccatttgattgc 273
Query: 273 gcacaagtgccagaatnnnnantcatacaacacccgcnagatttgaagt 321
|||||||||||||||| | ||||||||||||||| |||| ||||||
Sbjct: 274 gcacaagtgccagaattgcaagtcatacaacacccgccagatctgaagt 322
>gb|CW209293.1|CW209293 104_639_11189160_116_36988_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189160, DNA
sequence
Length = 678
Score = 157 bits (79), Expect = 8e-037
Identities = 100/109 (91%)
Strand = Plus / Plus
Query: 213 ggtccgcatattatgcaacgactgcggggcaatatcagatgtgcagttccatttgattgc 272
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 ggtccgcatattatgcaacgactgcggggctatatcagatgtgcagttccatttgattgc 619
Query: 273 gcacaagtgccagaatnnnnantcatacaacacccgcnagatttgaagt 321
|||||||||||||||| | |||||||||| |||| |||| ||||||
Sbjct: 620 gcacaagtgccagaattgcaagtcatacaacaaccgccagatctgaagt 668
Score = 131 bits (66), Expect = 5e-029
Identities = 87/95 (91%)
Strand = Plus / Plus
Query: 15 gtacttgttcgattcgacaaatgatgtttccgtcctgccttnnngtcataccattcatgt 74
|||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 93 gtacttgttcgagtcgacgaatgatgtttctgtcctgccttgtggtcataccattcatgt 152
Query: 75 aaagtgcctgaaagaaatggaagagcactgccagt 109
||||||||| ||||||||||| |||||||||||||
Sbjct: 153 aaagtgcctcaaagaaatggaggagcactgccagt 187
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 gtttgcatgccccctttgctccaa 131
||||||||||||||||||||||||
Sbjct: 261 gtttgcatgccccctttgctccaa 284
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggt 215
|||||||||||||||||||| | ||||||||
Sbjct: 338 ctctgtctgactcctgtgatgataaaatggt 368
>gb|CL167683.1|CL167683 104_364_10810249_114_31802_313 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810249, DNA
sequence
Length = 726
Score = 131 bits (66), Expect = 5e-029
Identities = 87/95 (91%)
Strand = Plus / Plus
Query: 15 gtacttgttcgattcgacaaatgatgtttccgtcctgccttnnngtcataccattcatgt 74
|||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 216 gtacttgttcgagtcgacgaatgatgtttctgtcctgccttgtggtcataccattcatgt 275
Query: 75 aaagtgcctgaaagaaatggaagagcactgccagt 109
||||||||| ||||||||||| |||||||||||||
Sbjct: 276 aaagtgcctcaaagaaatggaggagcactgccagt 310
Score = 71.9 bits (36), Expect = 4e-011
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 213 ggtccgcatattatgcaacgactgcggggcaatatcagatgtgc 256
|||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 683 ggtccgcatattatgcaacgactgcggggctatatcaaatgtgc 726
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 gtttgcatgccccctttgctccaa 131
||||||||||||||||||||||||
Sbjct: 384 gtttgcatgccccctttgctccaa 407
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 185 ctctgtctgactcctgtgatcacaaaatggt 215
|||||||||||||||||||| | ||||||||
Sbjct: 461 ctctgtctgactcctgtgatgataaaatggt 491
>gb|CW110903.1|CW110903 104_484_11103992_148_34526_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103992, DNA
sequence
Length = 389
Score = 105 bits (53), Expect = 3e-021
Identities = 83/94 (88%)
Strand = Plus / Plus
Query: 16 tacttgttcgattcgacaaatgatgtttccgtcctgccttnnngtcataccattcatgta 75
|||||| |||| ||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct: 265 tacttggtcgagtcgacgaatgatgtttctgtcctgccttgtggtcataccattcatgta 324
Query: 76 aagtgcctgaaagaaatggaagagcactgccagt 109
|||||||| ||||||||| |||||||||||||
Sbjct: 325 aagtgcctctcagaaatggaggagcactgccagt 358
>gb|CF756594.1|CF756594 DSAF1_6_B04.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_B04_A011 3', mRNA sequence
Length = 438
Score = 99.6 bits (50), Expect = 2e-019
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 250 gatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaacacccgc 309
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 gatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaacacccgc 60
Query: 310 nagatttgaagt 321
|||| ||||||
Sbjct: 61 cagatctgaagt 72
>gb|CF757158.1|CF757158 DSAF1_14_E03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_14_E03_A011 3', mRNA sequence
Length = 607
Score = 99.6 bits (50), Expect = 2e-019
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 250 gatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaacacccgc 309
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 gatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaacacccgc 60
Query: 310 nagatttgaagt 321
|||| ||||||
Sbjct: 61 cagatctgaagt 72
>gb|CF430276.1|CF430276 PH1_27_A10.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_A10_A002 3', mRNA sequence
Length = 609
Score = 89.7 bits (45), Expect = 2e-016
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 248 cagatgtgcagttccatttgattgcgcacaagtgccagaatnnnnantcatacaacaccc 307
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 1 cagatgtgcagttccatttgattgcgcacaagtgccagaattgcaagtcatacaacaccc 60
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,216
Number of Sequences: 832831
Number of extensions: 45216
Number of successful extensions: 11231
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11175
Number of HSP's gapped (non-prelim): 56
length of query: 344
length of database: 491,359,669
effective HSP length: 19
effective length of query: 325
effective length of database: 475,535,880
effective search space: 154549161000
effective search space used: 154549161000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)