BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAJ4a11.xg.3.2
(2249 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN145734.1|CN145734 WOUND1_34_H06.g1_A002 Wounded leaves... 1302 0.0
gb|CD223914.1|CD223914 CCC1_30_G11.g1_A007 Callus culture/c... 912 0.0
gb|BF421397.1|BF421397 FM1_8_D03.b1_A003 Floral-Induced Mer... 910 0.0
gb|CF071805.1|CF071805 FE1_18_G12.g1_A002 Iron-deficient se... 866 0.0
gb|AW564460.1|AW564460 LG1_295_D04.b1_A002 Light Grown 1 (L... 850 0.0
gb|BF421486.1|BF421486 FM1_8_D03.g1_A003 Floral-Induced Mer... 753 0.0
gb|BG560064.1|BG560064 RHIZ2_68_H11.b1_A003 Rhizome2 (RHIZ2... 749 0.0
gb|CD223806.1|CD223806 CCC1_30_G11.b1_A007 Callus culture/c... 700 0.0
gb|CF071687.1|CF071687 FE1_18_G12.b1_A002 Iron-deficient se... 692 0.0
gb|AW564508.1|AW564508 LG1_295_B04.b1_A002 Light Grown 1 (L... 652 0.0
gb|BF655757.1|BF655757 FM1_48_G05.b1_A003 Floral-Induced Me... 632 e-179
gb|AW564499.1|AW564499 LG1_295_F04.b1_A002 Light Grown 1 (L... 563 e-158
gb|AW284881.1|AW284881 LG1_295_D04.g1_A002 Light Grown 1 (L... 545 e-153
gb|CL182734.1|CL182734 104_394_10897688_116_31920_296 Sorgh... 371 e-100
gb|CL183371.1|CL183371 104_395_10898129_114_31917_353 Sorgh... 371 e-100
gb|CW164253.1|CW164253 104_572_11151890_116_36464_011 Sorgh... 371 e-100
gb|CW023290.1|CW023290 104_163_10432366_5_30009 Sorghum met... 363 5e-098
gb|CL183876.1|CL183876 104_396_10898466_114_31923_306 Sorgh... 323 4e-086
gb|CL183877.1|CL183877 104_396_10898466_116_31924_306 Sorgh... 323 4e-086
gb|CW286858.1|CW286858 104_764_11411112_116_35514_084 Sorgh... 297 2e-078
gb|CW024623.1|CW024623 104_168_10436303_1_30026 Sorghum met... 287 2e-075
gb|CL697097.2|CL697097 SP__Ba0006C23.r SP__Ba Sorghum propi... 280 5e-073
gb|BF655533.1|BF655533 FM1_48_G05.g1_A003 Floral-Induced Me... 238 2e-060
gb|BF657710.1|BF657710 OV2_20_G10.b1_A002 Ovary 2 (OV2) Sor... 167 6e-039
gb|CW286859.1|CW286859 104_764_11411112_148_35518_084 Sorgh... 149 1e-033
gb|CL182735.1|CL182735 104_394_10897688_148_31919_296 Sorgh... 135 2e-029
gb|CW132489.1|CW132489 104_515_11116240_116_34797_050 Sorgh... 125 2e-026
gb|CL183372.1|CL183372 104_395_10898129_116_31918_353 Sorgh... 100 1e-018
gb|CW317500.1|CW317500 104_809_11473446_148_35864_025 Sorgh... 98 4e-018
gb|CW132490.1|CW132490 104_515_11116240_148_34793_050 Sorgh... 86 2e-014
gb|CW362656.1|CW362656 fsbb001f033m23k0 Sorghum methylation... 66 2e-008
gb|CW023289.1|CW023289 104_163_10432366_1_30001 Sorghum met... 44 0.056
gb|CL151651.1|CL151651 104_334_10779408_114_31361_192 Sorgh... 42 0.22
gb|CL151652.1|CL151652 104_334_10779408_116_31362_192 Sorgh... 42 0.22
gb|CW258945.1|CW258945 104_725_11228154_116_35185_079 Sorgh... 42 0.22
gb|CW304250.1|CW304250 104_789_11465682_148_35706_077 Sorgh... 42 0.22
gb|CW364919.1|CW364919 fsbb001f037d01f0 Sorghum methylation... 42 0.22
gb|BG464574.1|BG464574 EM1_71_D12.g1_A002 Embryo 1 (EM1) So... 42 0.22
gb|CF070724.1|CF070724 FE1_4_G10.b1_A002 Iron-deficient see... 42 0.22
gb|CN137560.1|CN137560 OX1_58_D02.b1_A002 Oxidatively-stres... 42 0.22
>gb|CN145734.1|CN145734 WOUND1_34_H06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_34_H06_A002 5', mRNA sequence
Length = 725
Score = 1302 bits (657), Expect = 0.0
Identities = 709/725 (97%), Gaps = 1/725 (0%)
Strand = Plus / Plus
Query: 1049 atactcaactatcacat-ttggtgctatgggagacagcttctacgaatatttgctcaagg 1107
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 atactcaactatcacatattggtgctatgggagatagcttctacgaatatttgctcaagg 60
Query: 1108 tctggatccaggggaataaaactgagcatgtaaaacactacagacaaatgtgggagacat 1167
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctgggtccaggggaataaaactgagcatgtaaaacactacagacaaatgtgggagacat 120
Query: 1168 caatggaaggtctattaagtttaaccaagaaaactacaccatctaattactactacattt 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caatggaaggtctattaagtttaaccaagaaaactacaccatctaattactactacattt 180
Query: 1228 gtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgcttgctttgctcctg 1287
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtgaaaagaatggtggctcgttatctgacaagatggatgaacttgcttgctttgctcctg 240
Query: 1288 gtatgctggccttaggtgcctctggttacgggccagaaaaatcagagcaaattatgaatc 1347
|||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 241 gtatgctggcattaggagcctctggttatggaccagaaaaatcagagcaaattatgaatc 300
Query: 1348 ttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagttgg 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagttgg 360
Query: 1408 ctggagaaaattattttttccatactggacaggacatgggtgtgggcacgtcgtggaaca 1467
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 361 ctggagaaaattattttttccatactggacaggacatgagtgtgggcacatcgtggaaca 420
Query: 1468 tcttgagaccggagactgttgaatcactgatgtacctgtggcgcttgacggggaataaaa 1527
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 421 tcttgagaccggagactgttgaatcacttatgtacctgtggcgcttgacggggaataaaa 480
Query: 1528 cataccaagattgggggtgggacatattccaggcatttgagaagaactcccgcatagaat 1587
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cataccaggattgggggtgggacatattccaggcatttgagaagaactcccgcatagaat 540
Query: 1588 ctggatatgtgggactgagagatgtgaacactggtgaaaaagacaacatgatgcagagtt 1647
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 541 ctggatatgtgggactgagagatgtgaacactggtgaaaaagataacatgatgcagagct 600
Query: 1648 tcttcctggcagagacgctgaagtacctgtacctacttttctcccctccatcagtcatat 1707
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 601 tcttcctggcagagacgctcaagtacctctacctacttttctcccctccatcagtcatat 660
Query: 1708 ccttcgacgagtgggttttcaatactgaagctcacccattgagaattgttccagtaaatg 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccttcgacgagtgggttttcaatactgaagctcacccattgagaattgttccagtaaatg 720
Query: 1768 ataac 1772
|||||
Sbjct: 721 ataac 725
>gb|CD223914.1|CD223914 CCC1_30_G11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_30_G11_A007 5', mRNA sequence
Length = 598
Score = 912 bits (460), Expect = 0.0
Identities = 525/546 (96%), Gaps = 3/546 (0%)
Strand = Plus / Plus
Query: 84 cggcgacgagctcggatcccggcgatctagtcgccggaggcggtcccgatggctcggcgg 143
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 56 cggcgacgagcttggatcccggcgatctagtcgccggaggcggttccgatggctcggcgg 115
Query: 144 tcgtcttcctcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcgg 203
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tcgtcttcctcgtcgtcgggggcctggcggtacctgaacccggcgtactacctcaagcgg 175
Query: 204 cccaagcgcctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggac 263
||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct: 176 cccaagcgcctggcgctcctcttcttcgtcttcgtcgcggccactttcgccttctgggac 235
Query: 264 cgccagtcgctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 cgccagtcgctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaat 295
Query: 324 cggttgcatgaccagctaagaaaggctggagttaatctggatgaaaatccagtagtaagc 383
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 296 cggttgcatgaccagctaagaaaggctggagttcatctggatgaaaatccagtagtaagc 355
Query: 384 aacaagaattccagaaaagatcttgtagtagaaattgatcctgtcaataatgaaaaacgg 443
|||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 356 aacaggaattccagaaaagatctt---gtagaaattgatcctgtcaataatgaaaggcgg 412
Query: 444 gaaaaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggga 503
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 413 gaaaaagttaaagaggcaatgctccatgcttggaattcttatgtgaagtatgcctgggga 472
Query: 504 atggacgagcttcagccacaatcgaagaatggtatcaacagctttggtggtcttggagca 563
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 473 atggatgagcttcagccacaatcgaagaatggtatcaatagcttcggtggtcttggagca 532
Query: 564 acccttgttgactcacttgataccctatacataatgggcctgaaagatgaatttcagaaa 623
||||||||||||||||||||||| || || |||||||||||||||||||||||| |||||
Sbjct: 533 acccttgttgactcacttgatacgctgtatataatgggcctgaaagatgaatttgagaaa 592
Query: 624 gctaga 629
||||||
Sbjct: 593 gctaga 598
Score = 56.0 bits (28), Expect = 1e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 37 ttcgacgcggggacgacagagcgcacgcgcgaaccgccgc 76
||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 1 ttcgacgcggggacgcccgagcgcacgcgcgaatcgccgc 40
>gb|BF421397.1|BF421397 FM1_8_D03.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 528
Score = 910 bits (459), Expect = 0.0
Identities = 499/511 (97%), Gaps = 1/511 (0%)
Strand = Plus / Plus
Query: 1375 ataatttctaccaaaccactcccacgaagttggctggagaaaattattttttccatactg 1434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 9 ataatttctaccaaaccactcccacgaagttggctggagaaaattattttttccatacag 68
Query: 1435 gacaggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcac 1494
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 69 gacaggacatgagtgtgggcacatcgtggaacatcttgagaccggagactgttgaatcac 128
Query: 1495 tgatgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatat 1554
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ttatgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatat 188
Query: 1555 tccaggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtga 1614
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 189 tccaggcatttgagaagaactcccgcatagaatctggatatgtgggaaggagagatgtga 248
Query: 1615 acactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacc 1674
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 249 acactggtgaaaaagataacatgatgcagagcttcttcctggcagagacgctcaagtacc 308
Query: 1675 tgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactg 1734
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tctacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactg 368
Query: 1735 aagctcacccattgagaattgttccagtaaatgataacaaaggcattggaacaccggtcc 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aagctcacccattgagaattgttccagtaaatgataacaaaggcattggaacaccggtcc 428
Query: 1795 gacaattcgggagaaaacagggaaagcctgagtaacc-ttggatatagagcagtggattt 1853
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 429 gaccattcgggagaaaacagggaaagcctgagtaacctttggatatagagcagtggattt 488
Query: 1854 ttgaatccgccgtctgattctgacctccctg 1884
|||||||||||||||||||||||||||||||
Sbjct: 489 ttgaatccgccgtctgattctgacctccctg 519
>gb|CF071805.1|CF071805 FE1_18_G12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_18_G12_A002 5', mRNA sequence
Length = 593
Score = 866 bits (437), Expect = 0.0
Identities = 487/503 (96%), Gaps = 3/503 (0%)
Strand = Plus / Plus
Query: 84 cggcgacgagctcggatcccggcgatctagtcgccggaggcggtcccgatggctcggcgg 143
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 83 cggcgacgagcttggatcccggcgatctagtcgccggaggcggttccgatggctcggcgg 142
Query: 144 tcgtcttcctcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcgg 203
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tcgtcttcctcgtcgtcgggggcctggcggtacctgaacccggcgtactacctcaagcgg 202
Query: 204 cccaagcgcctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggac 263
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 203 cccaagcgcctggcgctcctcttcttcgtcttcgtcgcggccaccttcgccttctgggac 262
Query: 264 cgccagtcgctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cgccagtcgctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaat 322
Query: 324 cggttgcatgaccagctaagaaaggctggagttaatctggatgaaaatccagtagtaagc 383
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 cggttgcatgaccagctaagaaaggctggagttcatctggatgaaaatccagtagtaagc 382
Query: 384 aacaagaattccagaaaagatcttgtagtagaaattgatcctgtcaataatgaaaaacgg 443
|||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 383 aacaggaattccagaaaagatctt---gtagaaattgatcctgtcaataatgaaaggcgg 439
Query: 444 gaaaaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggga 503
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 gaaaaagttaaagaggcaatgctccatgcttggaattcttatgtgaagtatgcctgggga 499
Query: 504 atggacgagcttcagccacaatcgaagaatggtatcaacagctttggtggtcttggagca 563
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 500 atggatgagcttcagccacaatcgaagaatggtatcaatagcttcggtggtcttggagca 559
Query: 564 acccttgttgactcacttgatac 586
|||||||||||||||||||||||
Sbjct: 560 acccttgttgactcacttgatac 582
Score = 54.0 bits (27), Expect = 6e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 34 acattcgacgcggggacgacagagcgcacgcgcgaaccgccgc 76
|||||||||| ||||||| | ||||||||||||||| ||||||
Sbjct: 25 acattcgacgtggggacgcccgagcgcacgcgcgaatcgccgc 67
>gb|AW564460.1|AW564460 LG1_295_D04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 491
Score = 850 bits (429), Expect = 0.0
Identities = 468/481 (97%)
Strand = Plus / Plus
Query: 987 aagatatatccaagtgatggtttactgcctatttacataaatcctcattctgggacagca 1046
||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 11 aagatatatcccagtgatggtttgcttcctatctacataaatcctcattctgggacagca 70
Query: 1047 tcatactcaactatcacatttggtgctatgggagacagcttctacgaatatttgctcaag 1106
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 71 tcatactcaactatcacatttggtgctatgggagatagcttctacgaatatttgctcaag 130
Query: 1107 gtctggatccaggggaataaaactgagcatgtaaaacactacagacaaatgtgggagaca 1166
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gtctgggtccaggggaataaaactgagcatgtaaaacactacagacaaatgtgggagaca 190
Query: 1167 tcaatggaaggtctattaagtttaaccaagaaaactacaccatctaattactactacatt 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tcaatggaaggtctattaagtttaaccaagaaaactacaccatctaattactactacatt 250
Query: 1227 tgtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgcttgctttgctcct 1286
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgtgaaaagaatggtggctcgttatctgacaagatggatgaacttgcttgctttgctcct 310
Query: 1287 ggtatgctggccttaggtgcctctggttacgggccagaaaaatcagagcaaattatgaat 1346
||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 311 ggtatgctggcattaggagcctctggttatggaccagaaaaatcagagcaaattatgaat 370
Query: 1347 cttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagttg 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagttg 430
Query: 1407 gctggagaaaattattttttccatactggacaggacatgggtgtgggcacgtcgtggaac 1466
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 431 gctggagaaaattattttttccatactggacaggacatgagtgtgggcacatcgtggaac 490
Query: 1467 a 1467
|
Sbjct: 491 a 491
>gb|BF421486.1|BF421486 FM1_8_D03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 584
Score = 753 bits (380), Expect = 0.0
Identities = 433/449 (96%), Gaps = 4/449 (0%)
Strand = Plus / Plus
Query: 1568 gaagaactcccgcatagaatctggatatgtgggactgagagatgtgaacactggtgaaaa 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagaactcccgcatagaatctggatatgtgggactgagagatgtgaacactggtgaaaa 60
Query: 1628 agacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctactttt 1687
||| |||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||
Sbjct: 61 agataacatgatgcagagcttcttcctggcagagacgctcaagtacctctacntactttt 120
Query: 1688 ctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagctcacccatt 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagctcacccatt 180
Query: 1748 gagaattgttccagtaaatgataacaaaggcattggaacaccggtccgacaattcgggag 1807
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 gagaattgttccagtaaatgataacaaaggcattggaacaccggtccgaccattcgggag 240
Query: 1808 aaaacagggaaagcctgagtaacc-ttggatatagagcagtggatttttgaatccgccgt 1866
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaacagggaaagcctgagtaacctttggatatagagcagtggatttttgaatccgccgt 300
Query: 1867 ctgattctgacctccctgtt---gatgtgttctgacacgagggaactttctgcctgaagc 1923
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct: 301 ctgattctgacctccctgatgaagatgtgttctgacacgagggaactttctgcctgaaac 360
Query: 1924 agtaagggttagaaattacggcgatagattgtttagagcaaaaatcataggtagaggatg 1983
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 361 agtaagggttagaaatcacggcaatagattgtttagagcaaaaatcataggtagagcatg 420
Query: 1984 atgttatatgcggggcagtgacctccgtg 2012
||| |||||||||||||||||||||||||
Sbjct: 421 atgctatatgcggggcagtgacctccgtg 449
Score = 190 bits (96), Expect = 4e-046
Identities = 109/112 (97%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 2012 gaggtcaagagccccatagaagcttttatctttggatttgcttacgcaccctgaggtgca 2071
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 460 gaggtcaagagccccatagaagcttttatctttggacttgcttacgcacc-tgaggtgcg 518
Query: 2072 ttgttgatgtgtagcatacatctaactcactgtccatatgttgttgctttcc 2123
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttgttgatgtgtagcatacatctaactcactgtccatatgttgttgctttcc 570
>gb|BG560064.1|BG560064 RHIZ2_68_H11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 514
Score = 749 bits (378), Expect = 0.0
Identities = 425/440 (96%), Gaps = 3/440 (0%)
Strand = Plus / Plus
Query: 84 cggcgacgagctcggatcccggcgatctagtcgccggaggcggtcccgatggctcggcgg 143
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 78 cggcgacgagcttggatcccggcgatctagtcgccggaggcggttccgatggctcggcgg 137
Query: 144 tcgtcttcctcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcgg 203
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tcgtcttcctcgtcgtcgggggcctggcggtacctgaacccggcgtactacctcaagcgg 197
Query: 204 cccaagcgcctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggac 263
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 198 cccaagcgcctggcgctcctcttcttcgtcttcgtcgcggccaccttcgccttctgggac 257
Query: 264 cgccagtcgctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cgccagtcgctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaat 317
Query: 324 cggttgcatgaccagctaagaaaggctggagttaatctggatgaaaatccagtagtaagc 383
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 318 cggttgcatgaccagctaagaaaggctggagttcatctggatgaaaatccagttgtaagc 377
Query: 384 aacaagaattccagaaaagatcttgtagtagaaattgatcctgtcaataatgaaaaacgg 443
|||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 378 aacaggaattccagaaaagatctt---gtagaaattgatcctgtcaataatgaaaggcgg 434
Query: 444 gaaaaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggga 503
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 435 gaaaaagttaaagaggcaatgctccatgcttggaattcttatgtgaagtatgcctgggga 494
Query: 504 atggacgagcttcagccaca 523
||||| ||||||||||||||
Sbjct: 495 atggatgagcttcagccaca 514
Score = 61.9 bits (31), Expect = 2e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 34 acattcgacgcggggacgacagagcgcacgcgcgaaccgccgc 76
|||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 20 acattcgacgcggggacgcccgagcgcacgcgcgaatcgccgc 62
>gb|CD223806.1|CD223806 CCC1_30_G11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_30_G11_A007 3', mRNA sequence
Length = 631
Score = 700 bits (353), Expect = 0.0
Identities = 413/431 (95%), Gaps = 4/431 (0%)
Strand = Plus / Plus
Query: 1586 atctggatatgtgggactgagagatgtgaacactggtgaaaaagacaacatgatgcagag 1645
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 atctggatatgtgggactgagagatgtgaacactggtgaaaaagataacatgatgcagag 60
Query: 1646 tttcttcctggcagagacgctgaagtacctgtacctacttttctcccctccatcagtcat 1705
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 61 cttcttcctggcagagacgctcaagtacctctacctacttttctcccctccatcagtcat 120
Query: 1706 atccttcgacgagtgggttttcaatactgaagctcacccattgagaattgttccagtaaa 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atccttcgacgagtgggttttcaatactgaagctcacccattgagaattgttccagtaaa 180
Query: 1766 tgataacaaaggcattggaacaccggtccgacaattcgggagaaaacagggaaagcctga 1825
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 181 tgataacaaaggcattggaacgccggtccgaccattcgggagaaaacagggaaagcctga 240
Query: 1826 gtaacc-ttggatatagagcagtggatttttgaatccgccgtctgattctgacctccctg 1884
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtaacctttggatgtagagcagtggatttttgaatccgccgtctgattctgacctccctg 300
Query: 1885 tt---gatgtgttctgacacgagggaactttctgcctgaagcagtaagggttagaaatta 1941
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 301 atgaagatgtgttctgacacgagggaactttctgcctgaaacagtaagggttagaaatca 360
Query: 1942 cggcgatagattgtttagagcaaaaatcataggtagaggatgatgttatatgcggggcag 2001
|||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 361 cggcaatagattgcttagagcaaaaatcataggtagagcatgatgctatatgcggggcag 420
Query: 2002 tgacctccgtg 2012
|||||||||||
Sbjct: 421 tgacctccgtg 431
Score = 276 bits (139), Expect = 8e-072
Identities = 178/187 (95%), Gaps = 3/187 (1%)
Strand = Plus / Plus
Query: 2012 gaggtcaagagccccatagaagcttttatctttggatttgcttacgcaccctgaggtgca 2071
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 442 gaggtcaagagccccatagaagcttttatctttggacttgcttacgcacc-tgaggtgcc 500
Query: 2072 ttgttgatgtgtagcatacatctaactcactgtccatatgttgttgctttcctgggggct 2131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 ttgttgatgtgtagcatacatctaactcactgtccatatgttgttgctttcctggggcct 560
Query: 2132 ctgc-gagctgtattgtcattatgtaccccctagttattacttcttttcagatatgattc 2190
|||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 561 ctgcggatctgtattgtcattatgtgccccctagttattactt-ttttcagatatgattt 619
Query: 2191 atataaa 2197
|||||||
Sbjct: 620 atataaa 626
>gb|CF071687.1|CF071687 FE1_18_G12.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_18_G12_A002 3', mRNA sequence
Length = 634
Score = 692 bits (349), Expect = 0.0
Identities = 409/427 (95%), Gaps = 4/427 (0%)
Strand = Plus / Plus
Query: 1590 ggatatgtgggactgagagatgtgaacactggtgaaaaagacaacatgatgcagagtttc 1649
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 3 ggatatgtgggactgagagatgtgaacactggtgaaaaagataacatgatgcagagcttc 62
Query: 1650 ttcctggcagagacgctgaagtacctgtacctacttttctcccctccatcagtcatatcc 1709
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 63 ttcctggcagagacgctcaagtacctctacctacttttctcccctccatcagtcatatcc 122
Query: 1710 ttcgacgagtgggttttcaatactgaagctcacccattgagaattgttccagtaaatgat 1769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttcgacgagtgggttttcaatactgaagctcacccattgagaattgttccagtaaatgat 182
Query: 1770 aacaaaggcattggaacaccggtccgacaattcgggagaaaacagggaaagcctgagtaa 1829
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 183 aacaaaggcattggaacgccggtccgaccattcgggagaaaacagggaaagcctgagtaa 242
Query: 1830 cc-ttggatatagagcagtggatttttgaatccgccgtctgattctgacctccctgtt-- 1886
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 243 cctttggatatagagcagtggatttttgaatccgccgtctgattctgacctccctgatga 302
Query: 1887 -gatgtgttctgacacgagggaactttctgcctgaagcagtaagggttagaaattacggc 1945
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 303 agatgtgttctgacacgagggaactttctgcctgaaccagtaagggttagaaatcacggc 362
Query: 1946 gatagattgtttagagcaaaaatcataggtagaggatgatgttatatgcggggcagtgac 2005
||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 363 aatagatttcttagagcaaaaatcataggtagagcatgatgctatatgcggggcagtgac 422
Query: 2006 ctccgtg 2012
|||||||
Sbjct: 423 ctccgtg 429
Score = 252 bits (127), Expect = 1e-064
Identities = 175/187 (93%), Gaps = 3/187 (1%)
Strand = Plus / Plus
Query: 2012 gaggtcaagagccccatagaagcttttatctttggatttgcttacgcaccctgaggtgca 2071
|||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct: 440 gaggtcaagagccccatagaagcttttatcttcggacttgcttacgcacc-tgaggtgcg 498
Query: 2072 ttgttgatgtgtagcatacatctaactcactgtccatatgttgttgctttcctgggggct 2131
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 499 ttgttgatgtgtagcatacatttaactcactgtccatatgttgttgctttcctggggcct 558
Query: 2132 ctgc-gagctgtattgtcattatgtaccccctagttattacttcttttcagatatgattc 2190
|||| |||||||||||||||||||| ||||||||||||||||| |||||| | ||||||
Sbjct: 559 ctgcggagctgtattgtcattatgtgccccctagttattactt-ttttcaaaaatgattt 617
Query: 2191 atataaa 2197
|||||||
Sbjct: 618 atataaa 624
>gb|AW564508.1|AW564508 LG1_295_B04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 383
Score = 652 bits (329), Expect = 0.0
Identities = 362/373 (97%)
Strand = Plus / Plus
Query: 987 aagatatatccaagtgatggtttactgcctatttacataaatcctcattctgggacagca 1046
||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 11 aagatatatcccagtgatggtttgcttcctatctacataaatcctcattctgggacagca 70
Query: 1047 tcatactcaactatcacatttggtgctatgggagacagcttctacgaatatttgctcaag 1106
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 71 tcatactcaactatcacatttggtgctatgggagatagcttctacgaatatttgctcaag 130
Query: 1107 gtctggatccaggggaataaaactgagcatgtaaaacactacagacaaatgtgggagaca 1166
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gtctgggtccaggggaataaaactgagcatgtaaaacactacagacaaatgtgggagaca 190
Query: 1167 tcaatggaaggtctattaagtttaaccaagaaaactacaccatctaattactactacatt 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tcaatggaaggtctattaagtttaaccaagaaaactacaccatctaattactactacatt 250
Query: 1227 tgtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgcttgctttgctcct 1286
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgtgaaaagaatggtggctcgttatctgacaagatggatgaacttgcttgctttgctcct 310
Query: 1287 ggtatgctggccttaggtgcctctggttacgggccagaaaaatcagagcaaattatgaat 1346
||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 311 ggtatgctggcattaggagcctctggttatggaccagaaaaatcagagcaaattatgaat 370
Query: 1347 cttgcaaaagagc 1359
|||||||||||||
Sbjct: 371 cttgcaaaagagc 383
>gb|BF655757.1|BF655757 FM1_48_G05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 363
Score = 632 bits (319), Expect = e-179
Identities = 346/355 (97%)
Strand = Plus / Plus
Query: 1375 ataatttctaccaaaccactcccacgaagttggctggagaaaattattttttccatactg 1434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 9 ataatttctaccaaaccactcccacgaagttggctggagaaaattattttttccatacag 68
Query: 1435 gacaggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcac 1494
||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 69 gacaggacatgagtgtgggcacatcttggaacatcttgagaccggagactgttgaatcac 128
Query: 1495 tgatgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatat 1554
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ttatgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatat 188
Query: 1555 tccaggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtga 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tccaggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtga 248
Query: 1615 acactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacc 1674
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 249 acactggtgaaaaagataacatgatgcagagcttcttcctggcagagacgctcaagtacc 308
Query: 1675 tgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaa 1729
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tctacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaa 363
>gb|AW564499.1|AW564499 LG1_295_F04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 326
Score = 563 bits (284), Expect = e-158
Identities = 308/316 (97%)
Strand = Plus / Plus
Query: 987 aagatatatccaagtgatggtttactgcctatttacataaatcctcattctgggacagca 1046
||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 11 aagatatatcccagtgatggtttgcttcctatctacataaatcctcattctgggacagca 70
Query: 1047 tcatactcaactatcacatttggtgctatgggagacagcttctacgaatatttgctcaag 1106
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 71 tcatactcaactatcacatttggtgctatgggagatagcttctacgaatatttgctcaag 130
Query: 1107 gtctggatccaggggaataaaactgagcatgtaaaacactacagacaaatgtgggagaca 1166
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gtctgggtccaggggaataaaactgagcatgtaaaacactacagacaaatgtgggagaca 190
Query: 1167 tcaatggaaggtctattaagtttaaccaagaaaactacaccatctaattactactacatt 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tcaatggaaggtctattaagtttaaccaagaaaactacaccatctaattactactacatt 250
Query: 1227 tgtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgcttgctttgctcct 1286
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgtgaaaagaatggtggctcgttatctgacaagatggatgaacttgcttgctttgctcct 310
Query: 1287 ggtatgctggccttag 1302
||||||||||| ||||
Sbjct: 311 ggtatgctggcattag 326
>gb|AW284881.1|AW284881 LG1_295_D04.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 545 bits (275), Expect = e-153
Identities = 323/337 (95%), Gaps = 4/337 (1%)
Strand = Plus / Plus
Query: 1680 ctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagct 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagct 60
Query: 1740 cacccattgagaattgttccagtaaatgataacaaaggcattggaacaccggtccgacaa 1799
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 61 cacccattgagaattgttccagtaaatgataacaaaggcattggaacgccggtccgacca 120
Query: 1800 ttcgggagaaaacagggaaagcctgagtaacc-ttggatatagagcagtggatttttgaa 1858
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 ttcgggagaaaacagggaaagcctgagtaacctttggatatagagcagtggatttttgaa 180
Query: 1859 tccgccgtctgattctgacctccctgtt---gatgtgttctgacacgagggaactttctg 1915
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 181 tccgccgtctgattctgacctccctgatgaagatgtgttctgacacgagggaactttctg 240
Query: 1916 cctgaagcagtaagggttagaaattacggcgatagattgtttagagcaaaaatcataggt 1975
|||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct: 241 cctgaaacagtaagggttagaaatcacggcaatagatttcttagagcaaaaatcataggt 300
Query: 1976 agaggatgatgttatatgcggggcagtgacctccgtg 2012
|||| |||||| |||||||||||||||||||||||||
Sbjct: 301 agagcatgatgctatatgcggggcagtgacctccgtg 337
Score = 260 bits (131), Expect = 5e-067
Identities = 177/187 (94%), Gaps = 4/187 (2%)
Strand = Plus / Plus
Query: 2012 gaggtcaagagccccatagaagcttttatctttggatttgcttacgcaccctgaggtgca 2071
|||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct: 348 gaggtcaagagccccatagaagcttttatcttcggacttgcttacgcacc-tgaggtgcg 406
Query: 2072 ttgttgatgtgtagcatacatctaactcactgtccatatgttgttgctttcctgggggct 2131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 407 ttgttgatgtgtagcatacatctaactcactgtccatatgttgttgctttcctggggcct 466
Query: 2132 ctgc-gagctgtattgtcattatgtaccccctagttattacttcttttcagatatgattc 2190
|||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 467 ctgcggagctgtattgtcattatgtgccccctagtta-tactt-ttttcagatatgattt 524
Query: 2191 atataaa 2197
|||||||
Sbjct: 525 atataaa 531
>gb|CL182734.1|CL182734 104_394_10897688_116_31920_296 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897688, DNA
sequence
Length = 667
Score = 371 bits (187), Expect = e-100
Identities = 202/207 (97%)
Strand = Plus / Plus
Query: 84 cggcgacgagctcggatcccggcgatctagtcgccggaggcggtcccgatggctcggcgg 143
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 cggcgacgagcttggatcccggcgatctagtcgccggaggcggttccgatggctcggcgg 384
Query: 144 tcgtcttcctcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcgg 203
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcgtcttcctcgtcgtcgggggcctggcggtacctgaacccggcgtactacctcaagcgg 444
Query: 204 cccaagcgcctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggac 263
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 445 cccaagcgcctggcgctcctcttcttcgtcttcgtcgcggccaccttcgccttctgggac 504
Query: 264 cgccagtcgctcgtcagcgagtacgag 290
|||||||||||||||||||||||||||
Sbjct: 505 cgccagtcgctcgtcagcgagtacgag 531
Score = 54.0 bits (27), Expect = 6e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 34 acattcgacgcggggacgacagagcgcacgcgcgaaccgccgc 76
|||||||||| ||||||| | ||||||||||||||| ||||||
Sbjct: 267 acattcgacgtggggacgcccgagcgcacgcgcgaatcgccgc 309
>gb|CL183371.1|CL183371 104_395_10898129_114_31917_353 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898129, DNA
sequence
Length = 610
Score = 371 bits (187), Expect = e-100
Identities = 202/207 (97%)
Strand = Plus / Plus
Query: 84 cggcgacgagctcggatcccggcgatctagtcgccggaggcggtcccgatggctcggcgg 143
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 119 cggcgacgagcttggatcccggcgatctagtcgccggaggcggttccgatggctcggcgg 178
Query: 144 tcgtcttcctcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcgg 203
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tcgtcttcctcgtcgtcgggggcctggcggtacctgaacccggcgtactacctcaagcgg 238
Query: 204 cccaagcgcctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggac 263
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 239 cccaagcgcctggcgctcctcttcttcgtcttcgtcgcggccaccttcgccttctgggac 298
Query: 264 cgccagtcgctcgtcagcgagtacgag 290
|||||||||||||||||||||||||||
Sbjct: 299 cgccagtcgctcgtcagcgagtacgag 325
Score = 54.0 bits (27), Expect = 6e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 34 acattcgacgcggggacgacagagcgcacgcgcgaaccgccgc 76
|||||||||| ||||||| | ||||||||||||||| ||||||
Sbjct: 61 acattcgacgtggggacgcccgagcgcacgcgcgaatcgccgc 103
>gb|CW164253.1|CW164253 104_572_11151890_116_36464_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151890, DNA
sequence
Length = 733
Score = 371 bits (187), Expect = e-100
Identities = 202/207 (97%)
Strand = Plus / Minus
Query: 84 cggcgacgagctcggatcccggcgatctagtcgccggaggcggtcccgatggctcggcgg 143
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 479 cggcgacgagcttggatcccggcgatctagtcgccggaggcggttccgatggctcggcgg 420
Query: 144 tcgtcttcctcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcgg 203
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tcgtcttcctcgtcgtcgggggcctggcggtacctgaacccggcgtactacctcaagcgg 360
Query: 204 cccaagcgcctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggac 263
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 359 cccaagcgcctggcgctcctcttcttcgtcttcgtcgcggccaccttcgccttctgggac 300
Query: 264 cgccagtcgctcgtcagcgagtacgag 290
|||||||||||||||||||||||||||
Sbjct: 299 cgccagtcgctcgtcagcgagtacgag 273
Score = 54.0 bits (27), Expect = 6e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 34 acattcgacgcggggacgacagagcgcacgcgcgaaccgccgc 76
|||||||||| ||||||| | ||||||||||||||| ||||||
Sbjct: 537 acattcgacgtggggacgcccgagcgcacgcgcgaatcgccgc 495
>gb|CW023290.1|CW023290 104_163_10432366_5_30009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432366, DNA
sequence
Length = 655
Score = 363 bits (183), Expect = 5e-098
Identities = 201/207 (97%)
Strand = Plus / Minus
Query: 84 cggcgacgagctcggatcccggcgatctagtcgccggaggcggtcccgatggctcggcgg 143
|||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 585 cggcgacgagcttggatcccggcgatttagtcgccggaggcggttccgatggctcggcgg 526
Query: 144 tcgtcttcctcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcgg 203
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcgtcttcctcgtcgtcgggggcctggcggtacctgaacccggcgtactacctcaagcgg 466
Query: 204 cccaagcgcctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggac 263
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 465 cccaagcgcctggcgctcctcttcttcgtcttcgtcgcggccaccttcgccttctgggac 406
Query: 264 cgccagtcgctcgtcagcgagtacgag 290
|||||||||||||||||||||||||||
Sbjct: 405 cgccagtcgctcgtcagcgagtacgag 379
Score = 54.0 bits (27), Expect = 6e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 34 acattcgacgcggggacgacagagcgcacgcgcgaaccgccgc 76
|||||||||| ||||||| | ||||||||||||||| ||||||
Sbjct: 643 acattcgacgtggggacgcccgagcgcacgcgcgaatcgccgc 601
>gb|CL183876.1|CL183876 104_396_10898466_114_31923_306 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898466, DNA
sequence
Length = 672
Score = 323 bits (163), Expect = 4e-086
Identities = 172/175 (98%)
Strand = Plus / Plus
Query: 1438 aggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactga 1497
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 407 aggacatgagtgtgggcacatcgtggaacatcttgagaccggagactgttgaatcactta 466
Query: 1498 tgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattcc 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattcc 526
Query: 1558 aggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgt 1612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgt 581
Score = 167 bits (84), Expect = 6e-039
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1357 agcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggagaaa 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggagaaa 292
Query: 1417 attattttttccatactggacagg 1440
||||||||||||||||||||||||
Sbjct: 293 attattttttccatactggacagg 316
Score = 117 bits (59), Expect = 5e-024
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1284 cctggtatgctggccttaggtgcctctggttacgggccagaaaaatcagagcaaattatg 1343
|||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 cctggtatgctggcattaggagcctctggttatggaccagaaaaatcagagcaaattatg 60
Query: 1344 aatcttgcaaaagag 1358
|||||||||||||||
Sbjct: 61 aatcttgcaaaagag 75
>gb|CL183877.1|CL183877 104_396_10898466_116_31924_306 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898466, DNA
sequence
Length = 690
Score = 323 bits (163), Expect = 4e-086
Identities = 172/175 (98%)
Strand = Plus / Minus
Query: 1438 aggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactga 1497
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 aggacatgagtgtgggcacatcgtggaacatcttgagaccggagactgttgaatcactta 322
Query: 1498 tgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattcc 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattcc 262
Query: 1558 aggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgt 1612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgt 207
Score = 212 bits (107), Expect = 1e-052
Identities = 119/123 (96%)
Strand = Plus / Minus
Query: 1611 gtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaag 1670
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct: 123 gtgaacactggtgaaaaagataacatgatgcagagcttcttcctggcagagacgctcaag 64
Query: 1671 tacctgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaat 1730
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tacctctacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaat 4
Query: 1731 act 1733
|||
Sbjct: 3 act 1
Score = 167 bits (84), Expect = 6e-039
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 1357 agcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggagaaa 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggagaaa 496
Query: 1417 attattttttccatactggacagg 1440
||||||||||||||||||||||||
Sbjct: 495 attattttttccatactggacagg 472
>gb|CW286858.1|CW286858 104_764_11411112_116_35514_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411112, DNA
sequence
Length = 501
Score = 297 bits (150), Expect = 2e-078
Identities = 165/170 (97%)
Strand = Plus / Plus
Query: 696 agggttgttggaggtctgcttagttcatacgatctatctggtgataaagtatttcttgat 755
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 23 agggttgttggaggtctgcttagtgcatacgatctatctggtgataaagtatttcttgag 82
Query: 756 aaggctaaagatattacagatcgactcttacctgcttgggatacaacatctggcatccct 815
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 83 aaggctaaagatattacagatcgactattacctgcttgggatacaacatctggcatcccc 142
Query: 816 tataatagaataaacctagctcatggacgagcccataatcctggatggac 865
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tataataggataaacctagctcatggacgagcccataatcctggatggac 192
>gb|CW024623.1|CW024623 104_168_10436303_1_30026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10436303, DNA
sequence
Length = 599
Score = 287 bits (145), Expect = 2e-075
Identities = 174/183 (95%), Gaps = 3/183 (1%)
Strand = Plus / Plus
Query: 336 cagctaagaaaggctggagttaatctggatgaaaatccagtagtaagcaacaagaattcc 395
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 176 cagctaagaaaggctggagttcatctggatgaaaatccagtagtaagcaacaggaattcc 235
Query: 396 agaaaagatcttgtagtagaaattgatcctgtcaataatgaaaaacgggaaaaagttaaa 455
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 236 agaaaagatcttgtag---aaattgatcctgtcaataatgaaaggcgggaaaaagttaaa 292
Query: 456 gaggcaatgctccatgcttggaattcttatgttaagtatgcctggggaatggacgagctt 515
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 293 gaggcaatgctccatgcttggaattcttatgtgaagtatgcctggggaatggatgagctt 352
Query: 516 cag 518
|||
Sbjct: 353 cag 355
Score = 182 bits (92), Expect = 9e-044
Identities = 110/116 (94%)
Strand = Plus / Plus
Query: 516 cagccacaatcgaagaatggtatcaacagctttggtggtcttggagcaacccttgttgac 575
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 462 cagccacaatcgaagaatggtatcaatagcttcggtggtcttggagcaacccttgttgac 521
Query: 576 tcacttgataccctatacataatgggcctgaaagatgaatttcagaaagctagaga 631
||||||||||| || || |||||||||||||||||||||||| |||||||||||||
Sbjct: 522 tcacttgatacgctgtatataatgggcctgaaagatgaatttgagaaagctagaga 577
Score = 99.6 bits (50), Expect = 1e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 289 agtctgagatttcccgattagaagatgatataaatcggttgcatgaccag 338
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 agtctgagatttcccgattagaagatgatataaatcggttgcatgaccag 63
>gb|CL697097.2|CL697097 SP__Ba0006C23.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0006C23 3', DNA sequence
Length = 662
Score = 280 bits (141), Expect = 5e-073
Identities = 173/183 (94%), Gaps = 3/183 (1%)
Strand = Plus / Plus
Query: 336 cagctaagaaaggctggagttaatctggatgaaaatccagtagtaagcaacaagaattcc 395
||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||
Sbjct: 432 cagctaagaaaggctggagttcatctggatgaaaatccagttgtaagcaacaggaattcc 491
Query: 396 agaaaagatcttgtagtagaaattgatcctgtcaataatgaaaaacgggaaaaagttaaa 455
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 492 agaaaagatcttgtag---aaattgatcctgtcaataatgaaaggcgggaaaaagttaaa 548
Query: 456 gaggcaatgctccatgcttggaattcttatgttaagtatgcctggggaatggacgagctt 515
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 549 gaggcaatgctccatgcttggaattcttatgtgaagtatgcctggggaatggatgagctt 608
Query: 516 cag 518
|||
Sbjct: 609 cag 611
Score = 99.6 bits (50), Expect = 1e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 289 agtctgagatttcccgattagaagatgatataaatcggttgcatgaccag 338
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agtctgagatttcccgattagaagatgatataaatcggttgcatgaccag 318
>gb|BF655533.1|BF655533 FM1_48_G05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 314
Score = 238 bits (120), Expect = 2e-060
Identities = 154/163 (94%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 2012 gaggtcaagagccccatagaagcttttatctttggatttgcttacgcaccctgaggtgca 2071
|||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 148 gaggtcaagatccccatagaagcttttatctttggacttgcttacgcacc-tgaggtgcg 206
Query: 2072 ttgttgatgtgtagcatacatctaactcactgtccatatgttgttgctttcctgggggct 2131
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||
Sbjct: 207 ttgttgatgtgtagcatacatttaactcantgtccatatgttgttgctttcctggggcct 266
Query: 2132 ctgc-gagctgtattgtcattatgtaccccctagttattactt 2173
|||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 267 ctgcggagctgtattgtcattatgtgccccctagttattactt 309
Score = 202 bits (102), Expect = 1e-049
Identities = 120/126 (95%)
Strand = Plus / Plus
Query: 1887 gatgtgttctgacacgagggaactttctgcctgaagcagtaagggttagaaattacggcg 1946
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 12 gatgtgttttgacacgagggaactttctgcctgaaacagtaagggttagaaatcacggca 71
Query: 1947 atagattgtttagagcaaaaatcataggtagaggatgatgttatatgcggggcagtgacc 2006
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 72 atagattgtttagagcaaaaatcataggtagagcatgatgctatatgcggggcagtgacc 131
Query: 2007 tccgtg 2012
||||||
Sbjct: 132 tccgtg 137
>gb|BF657710.1|BF657710 OV2_20_G10.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 587
Score = 167 bits (84), Expect = 6e-039
Identities = 109/116 (93%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 516 cagccacaatcgaagaatggtatcaacagctttggtggtcttggagcaacccttgttgac 575
||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct: 15 cagccacaatcgaagaatggt-tcaatagcttcggtggtcttggagcaacccttgttgac 73
Query: 576 tcacttgataccctatacataatgggcctgaaagatgaatttcagaaagctagaga 631
||||||||||| || || |||||||||||||||||||||||| |||||||||||||
Sbjct: 74 tcacttgatacgctgtatataatgggcctgaaagatgaatttgagaaagctagaga 129
Score = 71.9 bits (36), Expect = 2e-010
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 632 ctgggtggcggagtcattagactttgacaaggatta 667
||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctgggtggcggagtcattagactttgacaaggatta 587
>gb|CW286859.1|CW286859 104_764_11411112_148_35518_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411112, DNA
sequence
Length = 456
Score = 149 bits (75), Expect = 1e-033
Identities = 87/91 (95%)
Strand = Plus / Minus
Query: 870 ggtgatagtatccttgcagattctggtacggagcaacttgaattcatagctctttcacag 929
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 271 ggtgacagtatccttgcagattctggtaccgagcaacttgaattcatagctctgtcacag 212
Query: 930 aggactggagatcccaaataccagcagaagg 960
|||||||| ||||||||||||||||||||||
Sbjct: 211 aggactggggatcccaaataccagcagaagg 181
>gb|CL182735.1|CL182735 104_394_10897688_148_31919_296 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897688, DNA
sequence
Length = 761
Score = 135 bits (68), Expect = 2e-029
Identities = 74/76 (97%)
Strand = Plus / Minus
Query: 336 cagctaagaaaggctggagttaatctggatgaaaatccagtagtaagcaacaagaattcc 395
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 76 cagctaagaaaggctggagttcatctggatgaaaatccagtagtaagcaacaggaattcc 17
Query: 396 agaaaagatcttgtag 411
||||||||||||||||
Sbjct: 16 agaaaagatcttgtag 1
Score = 99.6 bits (50), Expect = 1e-018
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 289 agtctgagatttcccgattagaagatgatataaatcggttgcatgaccag 338
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 agtctgagatttcccgattagaagatgatataaatcggttgcatgaccag 189
>gb|CW132489.1|CW132489 104_515_11116240_116_34797_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116240, DNA
sequence
Length = 549
Score = 125 bits (63), Expect = 2e-026
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 632 ctgggtggcggagtcattagactttgacaaggattatgatgcgagtgtttttgaaacgac 691
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 408 ctgggtggcggagtcattagactttgacaaggattatgatgcaagtgtttttgaaacgac 467
Query: 692 cataagg 698
|||||||
Sbjct: 468 cataagg 474
>gb|CL183372.1|CL183372 104_395_10898129_116_31918_353 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898129, DNA
sequence
Length = 709
Score = 99.6 bits (50), Expect = 1e-018
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 289 agtctgagatttcccgattagaagatgatataaatcggttgcatgaccag 338
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 agtctgagatttcccgattagaagatgatataaatcggttgcatgaccag 96
>gb|CW317500.1|CW317500 104_809_11473446_148_35864_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473446, DNA
sequence
Length = 520
Score = 97.6 bits (49), Expect = 4e-018
Identities = 107/125 (85%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 1488 gaatcactgatgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgg 1547
|||||||| ||||| ||| |||| | || || |||||||||||| | ||||||| |||
Sbjct: 1 gaatcacttatgtatttgtagcgcctaaccggtaataaaacatacga-gattgggtttgg 59
Query: 1548 gacatattccaggcatttgagaagaactcccgcatagaatctggatatgtgggactgaga 1607
||||||||||| |||||||||||||| ||||| ||||||||||||||||| || |||| |
Sbjct: 60 gacatattccaagcatttgagaagaattcccgtatagaatctggatatgttggtctgaaa 119
Query: 1608 gatgt 1612
|||||
Sbjct: 120 gatgt 124
>gb|CW132490.1|CW132490 104_515_11116240_148_34793_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116240, DNA
sequence
Length = 260
Score = 85.7 bits (43), Expect = 2e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 910 aattcatagctctttcacagaggactggagatcccaaataccagcagaagg 960
||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 238 aattcatagctctgtcacagaggactggggatcccaaataccagcagaagg 188
>gb|CW362656.1|CW362656 fsbb001f033m23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f033m23, DNA
sequence
Length = 753
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 882 cttgcagattctggtacggagcaacttgaattcatagctctttcacagaggactggagat 941
|||||||||| || || |||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 129 cttgcagatttaggaacagagcaacttgaatttatagctttatcacagaggactggagat 188
Query: 942 c 942
|
Sbjct: 189 c 189
>gb|CW023289.1|CW023289 104_163_10432366_1_30001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432366, DNA
sequence
Length = 426
Score = 44.1 bits (22), Expect = 0.056
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 cggccgaaacagaagcacacaa 24
||||||||||||||||||||||
Sbjct: 388 cggccgaaacagaagcacacaa 409
>gb|CL151651.1|CL151651 104_334_10779408_114_31361_192 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779408, DNA
sequence
Length = 728
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 141 cggtcgtcttcctcgtcgtcg 161
|||||||||||||||||||||
Sbjct: 671 cggtcgtcttcctcgtcgtcg 651
>gb|CL151652.1|CL151652 104_334_10779408_116_31362_192 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779408, DNA
sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 141 cggtcgtcttcctcgtcgtcg 161
|||||||||||||||||||||
Sbjct: 157 cggtcgtcttcctcgtcgtcg 177
>gb|CW258945.1|CW258945 104_725_11228154_116_35185_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228154, DNA
sequence
Length = 662
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 734 tggtgataaagtatttcttga 754
|||||||||||||||||||||
Sbjct: 79 tggtgataaagtatttcttga 99
>gb|CW304250.1|CW304250 104_789_11465682_148_35706_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465682, DNA
sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 734 tggtgataaagtatttcttga 754
|||||||||||||||||||||
Sbjct: 403 tggtgataaagtatttcttga 423
>gb|CW364919.1|CW364919 fsbb001f037d01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f037d01, DNA
sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 141 cggtcgtcttcctcgtcgtcg 161
|||||||||||||||||||||
Sbjct: 232 cggtcgtcttcctcgtcgtcg 212
>gb|BG464574.1|BG464574 EM1_71_D12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 666
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 141 cggtcgtcttcctcgtcgtcg 161
|||||||||||||||||||||
Sbjct: 306 cggtcgtcttcctcgtcgtcg 326
>gb|CF070724.1|CF070724 FE1_4_G10.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_4_G10_A002 3', mRNA sequence
Length = 581
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 141 cggtcgtcttcctcgtcgtcg 161
|||||||||||||||||||||
Sbjct: 278 cggtcgtcttcctcgtcgtcg 298
>gb|CN137560.1|CN137560 OX1_58_D02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_58_D02_A002 3', mRNA sequence
Length = 777
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 141 cggtcgtcttcctcgtcgtcg 161
|||||||||||||||||||||
Sbjct: 396 cggtcgtcttcctcgtcgtcg 416
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 577,975
Number of Sequences: 832831
Number of extensions: 577975
Number of successful extensions: 157791
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 157676
Number of HSP's gapped (non-prelim): 85
length of query: 2249
length of database: 491,359,669
effective HSP length: 20
effective length of query: 2229
effective length of database: 474,703,049
effective search space: 1058113096221
effective search space used: 1058113096221
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)