BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH2a02.xg.2.1
(644 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG103825.1|BG103825 RHIZ2_37_C06.b1_A003 Rhizome2 (RHIZ2... 658 0.0
gb|CW501227.1|CW501227 fsbb001f296p02k0 Sorghum methylation... 591 e-167
gb|CF071168.1|CF071168 FE1_15_B03.g1_A002 Iron-deficient se... 478 e-133
gb|CW171951.1|CW171951 104_583_11156017_148_36534_015 Sorgh... 329 2e-088
gb|CW433071.1|CW433071 fsbb001f148c01k0 Sorghum methylation... 133 2e-029
gb|CD425359.1|CD425359 SA1_11_F01.g1_A002 Salicylic acid-tr... 80 3e-013
gb|CW502291.1|CW502291 fsbb001f298i22k0 Sorghum methylation... 64 2e-008
gb|BE355233.1|BE355233 DG1_113_C09.b1_A002 Dark Grown 1 (DG... 64 2e-008
gb|BI643766.1|BI643766 IP1_56_G10.b1_A002 Immature pannicle... 64 2e-008
gb|CD227355.1|CD227355 CCC1_50_D12.g1_A007 Callus culture/c... 64 2e-008
gb|CN129331.1|CN129331 RHOH1_34_G09.g1_A002 Acid- and alkal... 64 2e-008
gb|CX607503.1|CX607503 ANR1_29_C09.b1_A002 Anaerobic roots ... 64 2e-008
gb|CW378708.1|CW378708 fsbb001f057j16k0 Sorghum methylation... 60 3e-007
gb|BI245743.1|BI245743 IP1_63_G04.b1_A002 Immature pannicle... 58 1e-006
gb|CW058702.1|CW058702 104_301_10518887_115_30164 Sorghum m... 54 2e-005
gb|BF587214.1|BF587214 FM1_33_F03.b2_A003 Floral-Induced Me... 54 2e-005
gb|BI075362.1|BI075362 IP1_19_F06.b1_A002 Immature pannicle... 54 2e-005
gb|BE598881.1|BE598881 PI1_83_C07.b1_A002 Pathogen induced ... 52 6e-005
gb|BG052472.1|BG052472 RHIZ2_13_D07.b1_A003 Rhizome2 (RHIZ2... 48 0.001
gb|BG102383.1|BG102383 RHIZ2_23_A10.b1_A003 Rhizome2 (RHIZ2... 48 0.001
gb|BG241776.1|BG241776 RHIZ2_50_A08.b1_A003 Rhizome2 (RHIZ2... 48 0.001
gb|BG465562.1|BG465562 RHIZ2_46_A10.b1_A003 Rhizome2 (RHIZ2... 48 0.001
gb|BG948020.1|BG948020 IP1_8_D05.b1_A002 Immature pannicle ... 48 0.001
gb|CW057966.1|CW057966 104_300_10518495_5_30082 Sorghum met... 44 0.016
gb|CW116440.1|CW116440 104_492_11107118_148_34603_061 Sorgh... 44 0.016
gb|BF586023.1|BF586023 FM1_33_F03.b1_A003 Floral-Induced Me... 44 0.016
gb|BG947269.1|BG947269 IP1_3_E08.b1_A002 Immature pannicle ... 44 0.016
gb|CW097123.1|CW097123 104_463_11002282_116_34345_045 Sorgh... 42 0.062
gb|CW184224.1|CW184224 104_600_11165039_116_36685_090 Sorgh... 42 0.062
gb|CW264046.1|CW264046 104_732_11231062_148_35236_085 Sorgh... 42 0.062
gb|CW337470.1|CW337470 104_837_11484183_116_36118_060 Sorgh... 42 0.062
gb|BF481793.1|BF481793 FM1_20_D08.b1_A003 Floral-Induced Me... 42 0.062
gb|CD213148.1|CD213148 HS1_28_B08.g1_A012 Heat-shocked seed... 42 0.062
gb|CF432727.1|CF432727 NIT1_18_C04.g1_A002 Nitrogen-deficie... 42 0.062
gb|CL172543.1|CL172543 104_375_10890237_148_31796_141 Sorgh... 40 0.25
gb|BF586580.1|BF586580 FM1_29_A05.b1_A003 Floral-Induced Me... 40 0.25
gb|BF655662.1|BF655662 FM1_47_C09.b1_A003 Floral-Induced Me... 40 0.25
gb|BG052201.1|BG052201 RHIZ2_7_D11.b1_A003 Rhizome2 (RHIZ2)... 40 0.25
>gb|BG103825.1|BG103825 RHIZ2_37_C06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 501
Score = 658 bits (332), Expect = 0.0
Identities = 412/439 (93%)
Strand = Plus / Plus
Query: 1 actcagcccatacaggcttctcattcttatccgcatggccgtccttggtctgttccttac 60
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 63 actcagcccatacaggcttctcattcttatccgcatggtcgtccttgctctgttccttat 122
Query: 61 atggagaattaagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctg 120
|||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 123 gtggagaattaagaacaagaatgaggatgcaatgtggctctggggcatgtctgttgtctg 182
Query: 121 cgaactctggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaa 180
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 183 tgaactctggtttggcttttcatggctgcttgaccagctgccaaagctgtgccctgtgaa 242
Query: 181 ccgggccactgaccttgccgtcctgaaagacaagtttgagaccccaacaccgtccaaccc 240
||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 243 ccgagccaccgaccttgctgtcctgaaagacaagtttgagactccaacaccgtcaaaccc 302
Query: 241 tactggacggtcggatttaccagggcttgatatatttgtatctactgctgatccggagaa 300
||||||||| || |||||||| |||||||| ||||| || ||||| |||||||| |||||
Sbjct: 303 tactggacgatcagatttacccgggcttgacatattcgtgtctacagctgatccagagaa 362
Query: 301 agaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgt 360
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 363 agaacctccattggtcacagcaaacactatcctgtccatccttgctgctgactaccctgt 422
Query: 361 ggagaagctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccat 420
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 423 ggagaagctntcttgctatgtttctgatgatggaggggcgctcctgacttttgaagccat 482
Query: 421 ggctgaagctgctagcttt 439
|||||||||||||||||||
Sbjct: 483 ggctgaagctgctagcttt 501
>gb|CW501227.1|CW501227 fsbb001f296p02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f296p02, DNA
sequence
Length = 641
Score = 591 bits (298), Expect = e-167
Identities = 412/450 (91%)
Strand = Plus / Minus
Query: 13 caggcttctcattcttatccgcatggccgtccttggtctgttccttacatggagaattaa 72
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 450 caggcttctcattcttatccgcatggtcgtccttgctctgttccttatgtggagaattaa 391
Query: 73 gcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactctggtt 132
| ||||||||||||||| || |||||||||| ||||||||||||||| |||||||||||
Sbjct: 390 gaccaagaatgaggatgcaatgtggctctgggccatgtctgttgtctgtgaactctggtt 331
Query: 133 tggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggccactga 192
||| |||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
Sbjct: 330 tggcttttcatggctgcttgaccagctgccaaagctgtgccctgtgacccgagccaccgc 271
Query: 193 ccttgccgtcctgaaagacaagtttgagaccccaacaccgtccaaccctactggacggtc 252
|||||| |||||||||| |||||||||||| ||| | ||||| | |||||||||||| ||
Sbjct: 270 ccttgctgtcctgaaagccaagtttgagactccacccccgtcgacccctactggacgatc 211
Query: 253 ggatttaccagggcttgatatatttgtatctactgctgatccggagaaagaacctccact 312
|||||||| ||||||| |||||||| ||| | |||||||| |||||||| |||||| |
Sbjct: 210 agatttacccgggcttgccatatttgtgtctccagctgatccagagaaagaccctccatt 151
Query: 313 ggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttc 372
|||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ggtcccagcaaccactatcctgtccatccttgctgctgactaccctgtggagaagctttc 91
Query: 373 ttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggctgaagctgc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 ttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggctgaagctgc 31
Query: 433 tagctttgctaatatgtgggttcctttctg 462
|||||||||||||||||||| |||||||||
Sbjct: 30 tagctttgctaatatgtgggctcctttctg 1
>gb|CF071168.1|CF071168 FE1_15_B03.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_B03_A002 5', mRNA sequence
Length = 698
Score = 478 bits (241), Expect = e-133
Identities = 259/265 (97%)
Strand = Plus / Plus
Query: 380 gtttctgatgatggaggggctctcctgacttttgaagccatggctgaagctgctagcttt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gtttctgatgatggaggggctctcctgacttttgaagccatggctgaagctgctagcttt 66
Query: 440 gctaatatgtgggttcctttctgtcgcaagcacaacattgagcctcgcaatcctgacagc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gctaatatgtgggttcctttctgtcgcaagcacaacattgagcctcgcaatcctgacagc 126
Query: 500 tacttcaatcttaagaaggacccatacaagaacaaggttcgccaggattttgtcaaggac 559
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 127 tacttcaatcttaagaaggacccttacaagaacaaggttcgccaggattttgtcaaggac 186
Query: 560 aggaggagggtcaagagggagtatgacgagttcaaggtcaggatcaatggtctgcctgac 619
||||||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct: 187 aggaggagggttaagagggagtatgatgagtttaaggtcaggatcaatgcgctgcctgac 246
Query: 620 tcgatacgccgacgctctgatgcgt 644
|||||||||||||||||||||||||
Sbjct: 247 tcgatacgccgacgctctgatgcgt 271
>gb|CW171951.1|CW171951 104_583_11156017_148_36534_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156017, DNA
sequence
Length = 588
Score = 329 bits (166), Expect = 2e-088
Identities = 208/222 (93%)
Strand = Plus / Minus
Query: 13 caggcttctcattcttatccgcatggccgtccttggtctgttccttacatggagaattaa 72
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 225 caggcttctcattcttatccgcatggtcgtccttgctctgttccttatgtggagaattaa 166
Query: 73 gcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactctggtt 132
| |||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 165 gaacaagaatgaggatgcaatgtggctctggggcatgtctgttgtctgtgaactctggtt 106
Query: 133 tggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggccactga 192
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 105 tggcttttcatggctgcttgaccagctgccaaagctgtgccctgtgaaccgagccaccga 46
Query: 193 ccttgccgtcctgaaagacaagtttgagaccccaacaccgtc 234
|||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 45 ccttgctgtcctgaaagacaagtttgagactccaacaccgtc 4
>gb|CW433071.1|CW433071 fsbb001f148c01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148c01, DNA
sequence
Length = 508
Score = 133 bits (67), Expect = 2e-029
Identities = 220/271 (81%)
Strand = Plus / Minus
Query: 267 ttgatatatttgtatctactgctgatccggagaaagaacctccactggtcacagcaaaca 326
|||| |||||||| || ||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 398 ttgacatatttgtgtcaactgctgatccggagaaggaaccagtcctggtcactgcaaaca 339
Query: 327 ctattctgtccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctg 386
| ||||| ||||| || || |||||||||||||| ||||||||| | || ||| | || |
Sbjct: 338 caattctctccattctcgcggctgactaccctgttgagaagcttgcgtgttatctgtcag 279
Query: 387 atgatggaggggctctcctgacttttgaagccatggctgaagctgctagctttgctaata 446
||||||||||||| || || || || ||||| ||||||||||| || |||||||| |||
Sbjct: 278 atgatggaggggcactgctcaccttcgaagcaatggctgaagcagcgagctttgccaatc 219
Query: 447 tgtgggttcctttctgtcgcaagcacaacattgagcctcgcaatcctgacagctacttca 506
| ||||| || ||||| | ||||| ||||||| || | || ||||||||||||||||
Sbjct: 218 tttgggtgccattctgcaggaagcatgacattgaacccaggaaccctgacagctacttca 159
Query: 507 atcttaagaaggacccatacaagaacaaggt 537
| || |||| || || | ||||||||||||
Sbjct: 158 acctcaagagagatcccttcaagaacaaggt 128
>gb|CD425359.1|CD425359 SA1_11_F01.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_11_F01_A002 5', mRNA sequence
Length = 591
Score = 79.8 bits (40), Expect = 3e-013
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| ||||||||||||| ||| ||||||| |||||||| | || || |||||
Sbjct: 491 gaacctcctttggtcacagcaaatactgttctgtctatccttgcggtggattatcctgtt 550
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| ||| |||||||||||||||||||||||||
Sbjct: 551 gataaggtttcttgctatgtttctgatgatgg 582
>gb|CW502291.1|CW502291 fsbb001f298i22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f298i22, DNA
sequence
Length = 689
Score = 63.9 bits (32), Expect = 2e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||||||| |||| || |||||| || ||||||| ||||||| || ||||||||
Sbjct: 569 gaacctccactgatcacggccaacactgttttgtccattcttgctgtggattaccctgtc 628
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || ||||||||||||||||||||
Sbjct: 629 gacaaagtgtcatgctatgtttctgatgatgg 660
>gb|BE355233.1|BE355233 DG1_113_C09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 494
Score = 63.9 bits (32), Expect = 2e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||||||| |||| || |||||| || ||||||| ||||||| || ||||||||
Sbjct: 113 gaacctccactgatcacggccaacactgttttgtccattcttgctgtggattaccctgtc 172
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || ||||||||||||||||||||
Sbjct: 173 gacaaagtgtcatgctatgtttctgatgatgg 204
>gb|BI643766.1|BI643766 IP1_56_G10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 63.9 bits (32), Expect = 2e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||||||| |||| || |||||| || ||||||| ||||||| || ||||||||
Sbjct: 183 gaacctccactgatcacggccaacactgttttgtccattcttgctgtggattaccctgtc 242
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || ||||||||||||||||||||
Sbjct: 243 gacaaagtgtcatgctatgtttctgatgatgg 274
>gb|CD227355.1|CD227355 CCC1_50_D12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_50_D12_A007 5', mRNA sequence
Length = 669
Score = 63.9 bits (32), Expect = 2e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||||||| |||| || |||||| || ||||||| ||||||| || ||||||||
Sbjct: 166 gaacctccactgatcacggccaacactgttttgtccattcttgctgtggattaccctgtc 225
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || ||||||||||||||||||||
Sbjct: 226 gacaaagtgtcatgctatgtttctgatgatgg 257
>gb|CN129331.1|CN129331 RHOH1_34_G09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_G09_A002 5', mRNA sequence
Length = 848
Score = 63.9 bits (32), Expect = 2e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||||||| |||| || |||||| || ||||||| ||||||| || ||||||||
Sbjct: 142 gaacctccactgatcacggccaacactgttttgtccattcttgctgtggattaccctgtc 201
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || ||||||||||||||||||||
Sbjct: 202 gacaaagtgtcatgctatgtttctgatgatgg 233
>gb|CX607503.1|CX607503 ANR1_29_C09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_C09_A002 3', mRNA sequence
Length = 768
Score = 63.9 bits (32), Expect = 2e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||||||| |||| || |||||| || ||||||| ||||||| || ||||||||
Sbjct: 575 gaacctccactgatcacggccaacactgttttgtccattcttgctgtggattaccctgtc 634
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || ||||||||||||||||||||
Sbjct: 635 gacaaagtgtcatgctatgtttctgatgatgg 666
>gb|CW378708.1|CW378708 fsbb001f057j16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f057j16, DNA
sequence
Length = 661
Score = 60.0 bits (30), Expect = 3e-007
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||||||| |||| || |||||| || ||||||| ||||||| || ||||||||
Sbjct: 572 gaacctccactgatcacggccaacactgttttgtccattcttgctgtggattaccctgtc 631
Query: 362 gagaagctttcttgctatgtttctgatgat 391
|| || | || ||||||||||||||||||
Sbjct: 632 gacaaagtgtcatgctatgtttctgatgat 661
>gb|BI245743.1|BI245743 IP1_63_G04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 455
Score = 58.0 bits (29), Expect = 1e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
||||| ||||||| || ||||||||||| ||| | ||||||||||| ||||||||||||
Sbjct: 106 tccattcttgctgtggattaccctgtggataaggtctcttgctatgtatctgatgatgga 165
Query: 395 g 395
|
Sbjct: 166 g 166
>gb|CW058702.1|CW058702 104_301_10518887_115_30164 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518887, DNA
sequence
Length = 574
Score = 54.0 bits (27), Expect = 2e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 299 aaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccct 358
||||| |||||||| |||| ||||||||| | ||||| || ||||||| ||||| |||
Sbjct: 34 aaagagcctccactaatcactgcaaacactgtgctgtctattcttgctgtggactatcct 93
Query: 359 gtggagaagctttcttgctatgtttctgatgatgg 393
|| |||||| | || ||||| || |||||||||||
Sbjct: 94 gtcgagaagatctcatgctacgtatctgatgatgg 128
>gb|BF587214.1|BF587214 FM1_33_F03.b2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 401
Score = 54.0 bits (27), Expect = 2e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 299 aaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccct 358
||||| |||||||| |||| ||||||||| | ||||| || ||||||| ||||| |||
Sbjct: 80 aaagagcctccactaatcactgcaaacactgtgctgtctattcttgctgtggactatcct 139
Query: 359 gtggagaagctttcttgctatgtttctgatgatgg 393
|| |||||| | || ||||| || |||||||||||
Sbjct: 140 gtcgagaagatctcatgctacgtatctgatgatgg 174
>gb|BI075362.1|BI075362 IP1_19_F06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 348
Score = 54.0 bits (27), Expect = 2e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 299 aaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccct 358
||||| |||||||| |||| ||||||||| | ||||| || ||||||| ||||| |||
Sbjct: 87 aaagagcctccactaatcactgcaaacactgtgctgtctattcttgctgtggactatcct 146
Query: 359 gtggagaagctttcttgctatgtttctgatgatgg 393
|| |||||| | || ||||| || |||||||||||
Sbjct: 147 gtcgagaagatctcatgctacgtatctgatgatgg 181
>gb|BE598881.1|BE598881 PI1_83_C07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 473
Score = 52.0 bits (26), Expect = 6e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 341 cttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatggaggggct 400
||||||| |||||| || || || ||| | ||||||||||||||||||||||| | |||
Sbjct: 9 cttgctgttgactatccggttgacaaggtatcttgctatgtttctgatgatggggctgct 68
Query: 401 ctcctgacttttga 414
| |||||||||||
Sbjct: 69 atgctgacttttga 82
>gb|BG052472.1|BG052472 RHIZ2_13_D07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 266
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||||||| |||| | |||||| | ||||||| ||||||| || ||||||||
Sbjct: 154 gaacctccactgatcacggacaacactgtcttgtccattcttgctgtggattaccctgtc 213
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || ||||||||||||||||||||
Sbjct: 214 gacaaagtgtcatgctatgtttctgatgatgg 245
>gb|BG102383.1|BG102383 RHIZ2_23_A10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 491
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| |||||||||| |||||| | || ||||||||| | | || || || ||
Sbjct: 199 gaacctcccttggtcacagcgaacactgtcctttccatcctttccgtggattatccggtt 258
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|||||| | || ||||||||||||||||||||
Sbjct: 259 gagaaggtctcctgctatgtttctgatgatgg 290
>gb|BG241776.1|BG241776 RHIZ2_50_A08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 429
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| |||||||||| |||||| | || ||||||||| | | || || || ||
Sbjct: 190 gaacctcccttggtcacagcgaacactgtcctttccatcctttccgtggattatccggtt 249
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|||||| | || ||||||||||||||||||||
Sbjct: 250 gagaaggtctcctgctatgtttctgatgatgg 281
>gb|BG465562.1|BG465562 RHIZ2_46_A10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 580
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| |||||||||| |||||| | || ||||||||| | | || || || ||
Sbjct: 190 gaacctcccttggtcacagcgaacactgtcctttccatcctttccgtggattatccggtt 249
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|||||| | || ||||||||||||||||||||
Sbjct: 250 gagaaggtctcctgctatgtttctgatgatgg 281
>gb|BG948020.1|BG948020 IP1_8_D05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 205
Score = 48.1 bits (24), Expect = 0.001
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
||||||||||||| | |||||||||| ||| |||| || |||||| | | || || ||
Sbjct: 21 gaaagaacctccattattcacagcaaatactgttctatctatcctttcggtggattatcc 80
Query: 358 tgtggagaagctttcttgctatgtttctgatgatgg 393
|| || ||| |||| ||||||||||||||||||||
Sbjct: 81 agttgataaggtttcatgctatgtttctgatgatgg 116
>gb|CW057966.1|CW057966 104_300_10518495_5_30082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518495, DNA
sequence
Length = 546
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 332 ctgtccatccttgctgctgactaccctgtggagaagct 369
||||||||||| || || |||||||| |||||||||||
Sbjct: 228 ctgtccatcctggcagccgactacccagtggagaagct 265
>gb|CW116440.1|CW116440 104_492_11107118_148_34603_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107118, DNA
sequence
Length = 183
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 332 ctgtccatccttgctgctgactaccctgtggagaagct 369
||||||||||| || || |||||||| |||||||||||
Sbjct: 127 ctgtccatcctggcagccgactacccagtggagaagct 164
>gb|BF586023.1|BF586023 FM1_33_F03.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 207
Score = 44.1 bits (22), Expect = 0.016
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
||||||||| | ||||| || ||||||| ||||| ||||| |||||| | || |||||
Sbjct: 101 gcaaacactgtgctgtctattcttgctgtggactatcctgtcgagaagatctcatgctac 160
Query: 380 gtttctgatgatgg 393
|| |||||||||||
Sbjct: 161 gtatctgatgatgg 174
>gb|BG947269.1|BG947269 IP1_3_E08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 465
Score = 44.1 bits (22), Expect = 0.016
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctg 347
|||||||||||| |||| || |||||| || ||||||| |||||||
Sbjct: 414 gaacctccactgatcacggccaacactgttttgtccattcttgctg 459
>gb|CW097123.1|CW097123 104_463_11002282_116_34345_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002282, DNA
sequence
Length = 703
Score = 42.1 bits (21), Expect = 0.062
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 577 ggagtatgacgagttcaaggtcaggatcaatgg 609
|||||| ||||||||||||| | ||||||||||
Sbjct: 266 ggagtacgacgagttcaaggcccggatcaatgg 298
>gb|CW184224.1|CW184224 104_600_11165039_116_36685_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165039, DNA
sequence
Length = 646
Score = 42.1 bits (21), Expect = 0.062
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 577 ggagtatgacgagttcaaggtcaggatcaatgg 609
|||||| ||||||||||||| | ||||||||||
Sbjct: 490 ggagtacgacgagttcaaggcccggatcaatgg 522
>gb|CW264046.1|CW264046 104_732_11231062_148_35236_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231062, DNA
sequence
Length = 732
Score = 42.1 bits (21), Expect = 0.062
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 577 ggagtatgacgagttcaaggtcaggatcaatgg 609
|||||| ||||||||||||| | ||||||||||
Sbjct: 494 ggagtacgacgagttcaaggcccggatcaatgg 526
>gb|CW337470.1|CW337470 104_837_11484183_116_36118_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484183, DNA
sequence
Length = 393
Score = 42.1 bits (21), Expect = 0.062
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 577 ggagtatgacgagttcaaggtcaggatcaatgg 609
|||||| ||||||||||||| | ||||||||||
Sbjct: 133 ggagtacgacgagttcaaggcccggatcaatgg 165
>gb|BF481793.1|BF481793 FM1_20_D08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 475
Score = 42.1 bits (21), Expect = 0.062
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 572 aagagggagtatgacgagttcaaggtcaggatcaatg 608
|||||||||||||| |||||||| || |||||||||
Sbjct: 329 aagagggagtatgaagagttcaaagtacggatcaatg 365
Score = 40.1 bits (20), Expect = 0.25
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 323 aacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctatgtt 382
|||||| | |||||||| ||||||| || |||||||| || || | || |||||||||
Sbjct: 80 aacactgtcctgtccattcttgctgtggattaccctgttgacaaagtatcatgctatgtt 139
Query: 383 tctgatga 390
||||||||
Sbjct: 140 tctgatga 147
>gb|CD213148.1|CD213148 HS1_28_B08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_28_B08_A012 5', mRNA sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.062
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 572 aagagggagtatgacgagttcaaggtcaggatcaatg 608
|||||||||||||| |||||||| || |||||||||
Sbjct: 36 aagagggagtatgaagagttcaaagtacggatcaatg 72
>gb|CF432727.1|CF432727 NIT1_18_C04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_18_C04_A002 5', mRNA sequence
Length = 627
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tttcttgctatgtttctgatgatgg 393
|||| ||||||||||||||||||||
Sbjct: 511 tttcatgctatgtttctgatgatgg 535
>gb|CL172543.1|CL172543 104_375_10890237_148_31796_141 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890237, DNA
sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.25
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 573 agagggagtatgacgagttcaaggtcaggatcaatg 608
|||| |||||||| || ||||||||||| |||||||
Sbjct: 54 agagagagtatgaggaattcaaggtcagaatcaatg 89
>gb|BF586580.1|BF586580 FM1_29_A05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 398
Score = 40.1 bits (20), Expect = 0.25
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 323 aacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctatgtt 382
|||||| | |||||||| ||||||| || |||||||| || || | || |||||||||
Sbjct: 168 aacactgtcctgtccattcttgctgtggattaccctgttgacaaagtatcatgctatgtt 227
Query: 383 tctgatga 390
||||||||
Sbjct: 228 tctgatga 235
>gb|BF655662.1|BF655662 FM1_47_C09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 419
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 374 tgctatgtttctgatgatgg 393
||||||||||||||||||||
Sbjct: 203 tgctatgtttctgatgatgg 222
>gb|BG052201.1|BG052201 RHIZ2_7_D11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 468
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 374 tgctatgtttctgatgatgg 393
||||||||||||||||||||
Sbjct: 47 tgctatgtttctgatgatgg 66
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 167,646
Number of Sequences: 832831
Number of extensions: 167646
Number of successful extensions: 46868
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46801
Number of HSP's gapped (non-prelim): 64
length of query: 644
length of database: 491,359,669
effective HSP length: 19
effective length of query: 625
effective length of database: 475,535,880
effective search space: 297209925000
effective search space used: 297209925000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)