BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF30a10.yg.2.1
(1130 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG322879.1|BG322879 EM1_15_C05.b1_A002 Embryo 1 (EM1) So... 381 e-103
gb|CW245377.1|CW245377 104_706_11220983_116_35078_090 Sorgh... 100 5e-019
gb|CW245378.1|CW245378 104_706_11220983_148_35074_090 Sorgh... 100 5e-019
gb|CW274894.1|CW274894 104_748_11404671_116_35378_064 Sorgh... 100 5e-019
gb|CW299429.1|CW299429 104_782_11463108_148_35687_042 Sorgh... 100 5e-019
gb|CW492142.1|CW492142 fsbb001f282e21f0 Sorghum methylation... 100 5e-019
gb|CW245379.1|CW245379 104_706_11220983_148_37594_090 Sorgh... 96 9e-018
gb|BZ366749.1|BZ366749 ic99a10.g1 WGS-SbicolorF (JM107 adap... 92 1e-016
gb|CW453529.1|CW453529 fsbb001f197j01k0 Sorghum methylation... 92 1e-016
gb|CW469228.1|CW469228 fsbb001f221n12f0 Sorghum methylation... 92 1e-016
gb|CW513630.1|CW513630 115_4_10511802_1_30021 Sorghum unfil... 80 5e-013
gb|BZ423062.1|BZ423062 id08h07.g1 WGS-SbicolorF (DH5a methy... 64 3e-008
gb|CW046239.1|CW046239 104_283_10510058_115_30139 Sorghum m... 56 7e-006
gb|BZ628748.1|BZ628748 ih62a08.g1 WGS-SbicolorF (DH5a methy... 44 0.028
gb|CW299428.1|CW299428 104_782_11463108_116_35690_042 Sorgh... 44 0.028
gb|CW468520.1|CW468520 fsbb001f220l24k0 Sorghum methylation... 44 0.028
gb|CW028216.1|CW028216 104_255_10498967_114_30394 Sorghum m... 40 0.43
gb|CW028217.1|CW028217 104_255_10498967_116_30393 Sorghum m... 40 0.43
gb|CW074627.1|CW074627 104_349_10804470_114_31381_294 Sorgh... 40 0.43
gb|CW122992.1|CW122992 104_502_11110973_148_34685_029 Sorgh... 40 0.43
gb|CW187888.1|CW187888 104_607_11172723_116_36721_008 Sorgh... 40 0.43
gb|CW260324.1|CW260324 104_727_11228905_116_35197_015 Sorgh... 40 0.43
gb|CW281873.1|CW281873 104_757_11408410_116_35462_035 Sorgh... 40 0.43
gb|CW299893.1|CW299893 104_783_11463359_116_36249_096 Sorgh... 40 0.43
gb|CW326742.1|CW326742 104_822_11478379_116_35967_078 Sorgh... 40 0.43
gb|CW326743.1|CW326743 104_822_11478379_148_35966_078 Sorgh... 40 0.43
gb|CW348378.1|CW348378 fsbb001f008l17f0 Sorghum methylation... 40 0.43
gb|CW348379.1|CW348379 fsbb001f008l17k0 Sorghum methylation... 40 0.43
gb|CW353469.1|CW353469 fsbb001f016d18k0 Sorghum methylation... 40 0.43
gb|CW386532.1|CW386532 fsbb001f070h19f0 Sorghum methylation... 40 0.43
gb|CW392251.1|CW392251 fsbb001f078m15k0 Sorghum methylation... 40 0.43
gb|CW444467.1|CW444467 fsbb001f166b13f0 Sorghum methylation... 40 0.43
gb|CW451116.1|CW451116 fsbb001f191b01f0 Sorghum methylation... 40 0.43
gb|CD461667.1|CD461667 SA1_34_D04.b1_A002 Salicylic acid-tr... 40 0.43
>gb|BG322879.1|BG322879 EM1_15_C05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 583
Score = 381 bits (192), Expect = e-103
Identities = 351/404 (86%)
Strand = Plus / Plus
Query: 477 cttgagggaaataaaccacttttggtttatgagtacatggagagtggaagccttgataaa 536
|||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||
Sbjct: 13 cttgagggaaataagccactgttggtttatgagtacctggagaatggaagccttgataaa 72
Query: 537 gcattgtttggaaatggaagattgaacttgaattggtcaacacgatataaaatatgcttg 596
||||| ||||||| ||| | | ||||| | | ||| ||||||| | | | ||||||||
Sbjct: 73 gcattatttggaagtgggaaactgaacctagactggccaacacgctttgagatatgctta 132
Query: 597 gggattgcaagaggcttagcttatctccacgaagagtctagcatccgcattgtgcatagg 656
|| |||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 133 ggcattgcaagaggccttgcttatctccatgaagagtctagcatccgtgttgtgcatagg 192
Query: 657 gacataaaggccagcaatgtattacttgatgccactttgaaccctaagatttcggatttc 716
||||||||||| |||||||| ||||||||||| | | | ||||||||||| || |||||
Sbjct: 193 gacataaaggctagcaatgtcttacttgatgcaaatctcaaccctaagatctcagatttt 252
Query: 717 gggctcgccaaactttatgacgataaaaagacacatgttagcacaaaagttgctggtaca 776
|||||||||||||||||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 253 gggctcgccaaactttatgatgacaagaagactcatgtcagcacaaaagttgcgggtaca 312
Query: 777 tttggctatctttcacctgagtacgccatgagaggtcacatgactgagaaagttgatatt 836
||||| || ||| ||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct: 313 tttggttaccttgcacctgagtacgccatgagaggtcatatgaccgagaaagttgatgtg 372
Query: 837 tttgcttttggtgtggtcatgttggagattattgctggaaggcc 880
||||| ||||| |||||||| ||||||| | | |||||||||||
Sbjct: 373 tttgcatttggcgtggtcatattggagactttagctggaaggcc 416
>gb|CW245377.1|CW245377 104_706_11220983_116_35078_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220983, DNA
sequence
Length = 641
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Plus
Query: 588 atatgcttggggattgcaagaggcttagcttatctccacgaagagtctagcatccgcatt 647
||||| ||||| || |||||||| |||||||||||||||| ||||| | | ||||||||
Sbjct: 395 atatgtttgggcatagcaagaggtatagcttatctccacgaggagtcgaccgtccgcatt 454
Query: 648 gtgcatagggacataaaggccagcaatgtattacttgatgccactttgaaccctaagatt 707
||||| ||||||||||||||||| ||||| || | |||||| | | |||||||||||
Sbjct: 455 gtgcacagggacataaaggccagtaatgtgttgatcgatgccgatcttaaccctaagatc 514
Query: 708 tcggatttcgggctcgccaaactttatgacgataaaaagacacatgttagcacaaaagtt 767
|| ||||| || || ||||| || || || || |||||||| || || ||||| ||||||
Sbjct: 515 tctgattttggtcttgccaagctctacgatgacaaaaagactcacgtcagcacgaaagtt 574
Query: 768 gc 769
||
Sbjct: 575 gc 576
Score = 77.8 bits (39), Expect = 2e-012
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 417 gaaatagaaactatttcccgagtgcagcaccgtaatcttgtgaagttgtttggtttttgc 476
||||||||||| || || ||||||||||||||||| || |||| ||||| || | |||
Sbjct: 143 gaaatagaaaccatctctcgagtgcagcaccgtaacctcgtgaggttgtacggctgctgc 202
Query: 477 cttgagggaaataaaccacttttggtttatgagtacatggagagtggaagccttgataaa 536
|||||| | || | |||||| |||| ||||||||| |||||| |||||||||||| ||
Sbjct: 203 cttgagagcaagacaccactgctggtctatgagtacctggagaacggaagccttgatcaa 262
Query: 537 gcattgtttgg 547
|| ||||||||
Sbjct: 263 gcgttgtttgg 273
>gb|CW245378.1|CW245378 104_706_11220983_148_35074_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220983, DNA
sequence
Length = 605
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 588 atatgcttggggattgcaagaggcttagcttatctccacgaagagtctagcatccgcatt 647
||||| ||||| || |||||||| |||||||||||||||| ||||| | | ||||||||
Sbjct: 604 atatgtttgggcatagcaagaggtatagcttatctccacgaggagtcgaccgtccgcatt 545
Query: 648 gtgcatagggacataaaggccagcaatgtattacttgatgccactttgaaccctaagatt 707
||||| ||||||||||||||||| ||||| || | |||||| | | |||||||||||
Sbjct: 544 gtgcacagggacataaaggccagtaatgtgttgatcgatgccgatcttaaccctaagatc 485
Query: 708 tcggatttcgggctcgccaaactttatgacgataaaaagacacatgttagcacaaaagtt 767
|| ||||| || || ||||| || || || || |||||||| || || ||||| ||||||
Sbjct: 484 tctgattttggtcttgccaagctctacgatgacaaaaagactcacgtcagcacgaaagtt 425
Query: 768 gc 769
||
Sbjct: 424 gc 423
Score = 95.6 bits (48), Expect = 9e-018
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 779 tggctatctttcacctgagtacgccatgagaggtcacatgactgagaaagttgatatttt 838
||||||||| |||||||||||||||||||||| || ||||||||||| |||||| | ||
Sbjct: 317 tggctatctcgcacctgagtacgccatgagagggcatatgactgagaaggttgatgtgtt 258
Query: 839 tgcttttggtgtggtcatgttggagattattgctgg 874
||| ||||| |||||| |||||||||| |||||||
Sbjct: 257 tgcgtttggcgtggtcgcgttggagattgttgctgg 222
>gb|CW274894.1|CW274894 104_748_11404671_116_35378_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404671, DNA
sequence
Length = 711
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Plus
Query: 588 atatgcttggggattgcaagaggcttagcttatctccacgaagagtctagcatccgcatt 647
||||| ||||| || |||||||| |||||||||||||||| ||||| | | ||||||||
Sbjct: 100 atatgtttgggcatagcaagaggtatagcttatctccacgaggagtcgaccgtccgcatt 159
Query: 648 gtgcatagggacataaaggccagcaatgtattacttgatgccactttgaaccctaagatt 707
||||| ||||||||||||||||| ||||| || | |||||| | | |||||||||||
Sbjct: 160 gtgcacagggacataaaggccagtaatgtgttgatcgatgccgatcttaaccctaagatc 219
Query: 708 tcggatttcgggctcgccaaactttatgacgataaaaagacacatgttagcacaaaagtt 767
|| ||||| || || ||||| || || || || |||||||| || || ||||| ||||||
Sbjct: 220 tctgattttggtcttgccaagctctacgatgacaaaaagactcacgtcagcacgaaagtt 279
Query: 768 gc 769
||
Sbjct: 280 gc 281
Score = 95.6 bits (48), Expect = 9e-018
Identities = 84/96 (87%)
Strand = Plus / Plus
Query: 779 tggctatctttcacctgagtacgccatgagaggtcacatgactgagaaagttgatatttt 838
||||||||| |||||||||||||||||||||| || ||||||||||| |||||| | ||
Sbjct: 387 tggctatctcgcacctgagtacgccatgagagggcatatgactgagaaggttgatgtgtt 446
Query: 839 tgcttttggtgtggtcatgttggagattattgctgg 874
||| ||||| |||||| |||||||||| |||||||
Sbjct: 447 tgcgtttggcgtggtcgcgttggagattgttgctgg 482
>gb|CW299429.1|CW299429 104_782_11463108_148_35687_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463108, DNA
sequence
Length = 705
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 588 atatgcttggggattgcaagaggcttagcttatctccacgaagagtctagcatccgcatt 647
||||| ||||| || |||||||| |||||||||||||||| ||||| | | ||||||||
Sbjct: 238 atatgtttgggcatagcaagaggtatagcttatctccacgaggagtcgaccgtccgcatt 179
Query: 648 gtgcatagggacataaaggccagcaatgtattacttgatgccactttgaaccctaagatt 707
||||| ||||||||||||||||| ||||| || | |||||| | | |||||||||||
Sbjct: 178 gtgcacagggacataaaggccagtaatgtgttgatcgatgccgatcttaaccctaagatc 119
Query: 708 tcggatttcgggctcgccaaactttatgacgataaaaagacacatgttagcacaaaagtt 767
|| ||||| || || ||||| || || || || |||||||| || || ||||| ||||||
Sbjct: 118 tctgattttggtcttgccaagctctacgatgacaaaaagactcacgtcagcacgaaagtt 59
Query: 768 gc 769
||
Sbjct: 58 gc 57
Score = 77.8 bits (39), Expect = 2e-012
Identities = 108/131 (82%)
Strand = Plus / Minus
Query: 417 gaaatagaaactatttcccgagtgcagcaccgtaatcttgtgaagttgtttggtttttgc 476
||||||||||| || || ||||||||||||||||| || |||| ||||| || | |||
Sbjct: 490 gaaatagaaaccatctctcgagtgcagcaccgtaacctcgtgaggttgtacggctgctgc 431
Query: 477 cttgagggaaataaaccacttttggtttatgagtacatggagagtggaagccttgataaa 536
|||||| | || | |||||| |||| ||||||||| |||||| |||||||||||| ||
Sbjct: 430 cttgagagcaagacaccactgctggtctatgagtacctggagaacggaagccttgatcaa 371
Query: 537 gcattgtttgg 547
|| ||||||||
Sbjct: 370 gcgttgtttgg 360
>gb|CW492142.1|CW492142 fsbb001f282e21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f282e21, DNA
sequence
Length = 755
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Plus
Query: 588 atatgcttggggattgcaagaggcttagcttatctccacgaagagtctagcatccgcatt 647
||||| ||||| || |||||||| |||||||||||||||| ||||| | | ||||||||
Sbjct: 218 atatgtttgggcatagcaagaggtatagcttatctccacgaggagtcgaccgtccgcatt 277
Query: 648 gtgcatagggacataaaggccagcaatgtattacttgatgccactttgaaccctaagatt 707
||||| ||||||||||||||||| ||||| || | |||||| | | |||||||||||
Sbjct: 278 gtgcacagggacataaaggccagtaatgtgttgatcgatgccgatcttaaccctaagatc 337
Query: 708 tcggatttcgggctcgccaaactttatgacgataaaaagacacatgttagcacaaaagtt 767
|| ||||| || || ||||| || || || || |||||||| || || ||||| ||||||
Sbjct: 338 tctgattttggtcttgccaagctctacgatgacaaaaagactcacgtcagcacgaaagtt 397
Query: 768 gc 769
||
Sbjct: 398 gc 399
Score = 95.6 bits (48), Expect = 9e-018
Identities = 84/96 (87%)
Strand = Plus / Plus
Query: 779 tggctatctttcacctgagtacgccatgagaggtcacatgactgagaaagttgatatttt 838
||||||||| |||||||||||||||||||||| || ||||||||||| |||||| | ||
Sbjct: 505 tggctatctcgcacctgagtacgccatgagagggcatatgactgagaaggttgatgtgtt 564
Query: 839 tgcttttggtgtggtcatgttggagattattgctgg 874
||| ||||| |||||| |||||||||| |||||||
Sbjct: 565 tgcgtttggcgtggtcgcgttggagattgttgctgg 600
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 474 tgccttgagggaaataaaccacttttggtttatgagtacatggagagtggaagccttgat 533
||||||||| | || | |||||| |||| ||||||||| |||||| ||||||||||||
Sbjct: 23 tgccttgagagcaagacaccactgctggtctatgagtacctggagaacggaagccttgat 82
Query: 534 aaagcattgtttgg 547
|||| ||||||||
Sbjct: 83 caagcgttgtttgg 96
>gb|CW245379.1|CW245379 104_706_11220983_148_37594_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220983, DNA
sequence
Length = 596
Score = 95.6 bits (48), Expect = 9e-018
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 779 tggctatctttcacctgagtacgccatgagaggtcacatgactgagaaagttgatatttt 838
||||||||| |||||||||||||||||||||| || ||||||||||| |||||| | ||
Sbjct: 317 tggctatctcgcacctgagtacgccatgagagggcatatgactgagaaggttgatgtgtt 258
Query: 839 tgcttttggtgtggtcatgttggagattattgctgg 874
||| ||||| |||||| |||||||||| |||||||
Sbjct: 257 tgcgtttggcgtggtcgcgttggagattgttgctgg 222
Score = 85.7 bits (43), Expect = 8e-015
Identities = 136/167 (81%)
Strand = Plus / Minus
Query: 603 gcaagaggcttagcttatctccacgaagagtctagcatccgcattgtgcatagggacata 662
|||||||| |||||||||||||||| ||||| | | ||||||||||||| |||||||||
Sbjct: 589 gcaagaggtatagcttatctccacgaggagtcgaccgtccgcattgtgcacagggacata 530
Query: 663 aaggccagcaatgtattacttgatgccactttgaaccctaagatttcggatttcgggctc 722
|||||||| ||||| | | | |||||| | | ||||||||||| || ||| | || ||
Sbjct: 529 aaggccagtaatgtgtgaatcgatgccgatcttaaccctaagatctctgatgttggtctt 470
Query: 723 gccaaactttatgacgataaaaagacacatgttagcacaaaagttgc 769
||||| || || || || |||||||| || || ||||| ||||||||
Sbjct: 469 gccaagctctacgatgacaaaaagactcacgtcagcacgaaagttgc 423
>gb|BZ366749.1|BZ366749 ic99a10.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic99a10 5', DNA sequence
Length = 690
Score = 91.7 bits (46), Expect = 1e-016
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 600 attgcaagaggcttagcttatctccacgaagagtctagcatccgcattgtgcatagggac 659
|||||||||||| || | ||||| ||||| ||||| ||| | ||||||||||||||||||
Sbjct: 421 attgcaagaggcctaacctatcttcacgaggagtccagcgtgcgcattgtgcatagggac 480
Query: 660 ataaaggccagcaatgtattacttga 685
|| |||||||||||||| ||||||||
Sbjct: 481 atcaaggccagcaatgttttacttga 506
>gb|CW453529.1|CW453529 fsbb001f197j01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f197j01, DNA
sequence
Length = 668
Score = 91.7 bits (46), Expect = 1e-016
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 600 attgcaagaggcttagcttatctccacgaagagtctagcatccgcattgtgcatagggac 659
|||||||||||| || | ||||| ||||| ||||| ||| | ||||||||||||||||||
Sbjct: 111 attgcaagaggcctaacctatcttcacgaggagtccagcgtgcgcattgtgcatagggac 170
Query: 660 ataaaggccagcaatgtattacttga 685
|| |||||||||||||| ||||||||
Sbjct: 171 atcaaggccagcaatgttttacttga 196
>gb|CW469228.1|CW469228 fsbb001f221n12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221n12, DNA
sequence
Length = 735
Score = 91.7 bits (46), Expect = 1e-016
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 600 attgcaagaggcttagcttatctccacgaagagtctagcatccgcattgtgcatagggac 659
|||||||||||| || | ||||| ||||| ||||| ||| | ||||||||||||||||||
Sbjct: 74 attgcaagaggcctaacctatcttcacgaggagtccagcgtgcgcattgtgcatagggac 133
Query: 660 ataaaggccagcaatgtattacttga 685
|| |||||||||||||| ||||||||
Sbjct: 134 atcaaggccagcaatgttttacttga 159
>gb|CW513630.1|CW513630 115_4_10511802_1_30021 Sorghum unfiltered library (LibID: 115)
Sorghum bicolor genomic clone 10511802, DNA sequence
Length = 580
Score = 79.8 bits (40), Expect = 5e-013
Identities = 130/160 (81%)
Strand = Plus / Plus
Query: 619 atctccacgaagagtctagcatccgcattgtgcatagggacataaaggccagcaatgtat 678
||||||| |||||| |||||||||| || || ||||||||| ||||| | | |||| |
Sbjct: 185 atctccatgaagagactagcatccgagctgggcctagggacatcaaggctaacgatgtct 244
Query: 679 tacttgatgccactttgaaccctaagatttcggatttcgggctcgccaaactttatgacg 738
|||| ||||| | | | |||||||||| || ||||| ||||||||||||||||| || |
Sbjct: 245 tactcgatgcaaatctcaaccctaagaactcagattttgggctcgccaaactttaggatg 304
Query: 739 ataaaaagacacatgttagcacaaaagttgctggtacatt 778
| | ||||| ||||| | |||||||||||| ||||||||
Sbjct: 305 accacaagactcatgtgatcacaaaagttgcgggtacatt 344
>gb|BZ423062.1|BZ423062 id08h07.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id08h07 5', DNA sequence
Length = 759
Score = 63.9 bits (32), Expect = 3e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 417 gaaatagaaactatttcccgagtgcagcaccgtaatcttgtgaagttgtttggtttttgc 476
||||||||||| || || ||||||||||||||||| || |||| ||||| || | |||
Sbjct: 116 gaaatagaaaccatctctcgagtgcagcaccgtaacctcgtgaggttgtacggctgctgc 57
Query: 477 cttgagggaaataaaccacttttggtttatgagtacatggagagtggaagccttga 532
|||||| | || | |||||| |||| ||||||||| |||||| |||||||||||
Sbjct: 56 cttgagagcaagacaccactgctggtctatgagtacctggagaacggaagccttga 1
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 303 cttggtgaagggggatatggatcagtttataagg 336
||||||||||| ||||||||||| ||||| ||||
Sbjct: 444 cttggtgaaggaggatatggatcggtttacaagg 411
>gb|CW046239.1|CW046239 104_283_10510058_115_30139 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10510058, DNA
sequence
Length = 568
Score = 56.0 bits (28), Expect = 7e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 600 attgcaagaggcttagcttatctccacgaagagtctagcatccgcattgtgcatagggac 659
|||||||||||| || | ||||| ||||| ||||| ||| | ||||||||||||||||||
Sbjct: 60 attgcaagaggcctaacctatcttcacgaggagtccagcgtgcgcattgtgcatagggac 1
>gb|BZ628748.1|BZ628748 ih62a08.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih62a08 5', DNA sequence
Length = 631
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 303 cttggtgaagggggatatggatcagtttataagg 336
||||||||||| ||||||||||| ||||| ||||
Sbjct: 273 cttggtgaaggaggatatggatcggtttacaagg 240
>gb|CW299428.1|CW299428 104_782_11463108_116_35690_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463108, DNA
sequence
Length = 723
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 303 cttggtgaagggggatatggatcagtttataagg 336
||||||||||| ||||||||||| ||||| ||||
Sbjct: 595 cttggtgaaggaggatatggatcggtttacaagg 628
>gb|CW468520.1|CW468520 fsbb001f220l24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f220l24, DNA
sequence
Length = 598
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 645 attgtgcatagggacataaaggccag 670
||||||||||||||||| ||||||||
Sbjct: 492 attgtgcatagggacatcaaggccag 467
>gb|CW028216.1|CW028216 104_255_10498967_114_30394 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498967, DNA
sequence
Length = 836
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 708 tcggatttcgggctcgccaa 727
||||||||||||||||||||
Sbjct: 255 tcggatttcgggctcgccaa 236
>gb|CW028217.1|CW028217 104_255_10498967_116_30393 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498967, DNA
sequence
Length = 859
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 708 tcggatttcgggctcgccaa 727
||||||||||||||||||||
Sbjct: 765 tcggatttcgggctcgccaa 784
>gb|CW074627.1|CW074627 104_349_10804470_114_31381_294 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804470, DNA
sequence
Length = 704
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 293 tgctaatcttcttggtgaag 312
||||||||||||||||||||
Sbjct: 3 tgctaatcttcttggtgaag 22
>gb|CW122992.1|CW122992 104_502_11110973_148_34685_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110973, DNA
sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 708 tcggatttcgggctcgccaa 727
||||||||||||||||||||
Sbjct: 302 tcggatttcgggctcgccaa 283
>gb|CW187888.1|CW187888 104_607_11172723_116_36721_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172723, DNA
sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 708 tcggatttcgggctcgccaa 727
||||||||||||||||||||
Sbjct: 347 tcggatttcgggctcgccaa 328
>gb|CW260324.1|CW260324 104_727_11228905_116_35197_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228905, DNA
sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 708 tcggatttcgggctcgccaa 727
||||||||||||||||||||
Sbjct: 338 tcggatttcgggctcgccaa 357
>gb|CW281873.1|CW281873 104_757_11408410_116_35462_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408410, DNA
sequence
Length = 554
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 293 tgctaatcttcttggtgaag 312
||||||||||||||||||||
Sbjct: 131 tgctaatcttcttggtgaag 112
>gb|CW299893.1|CW299893 104_783_11463359_116_36249_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463359, DNA
sequence
Length = 565
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 708 tcggatttcgggctcgccaa 727
||||||||||||||||||||
Sbjct: 501 tcggatttcgggctcgccaa 482
>gb|CW326742.1|CW326742 104_822_11478379_116_35967_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478379, DNA
sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 708 tcggatttcgggctcgccaa 727
||||||||||||||||||||
Sbjct: 249 tcggatttcgggctcgccaa 268
>gb|CW326743.1|CW326743 104_822_11478379_148_35966_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478379, DNA
sequence
Length = 726
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 708 tcggatttcgggctcgccaa 727
||||||||||||||||||||
Sbjct: 582 tcggatttcgggctcgccaa 563
>gb|CW348378.1|CW348378 fsbb001f008l17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f008l17, DNA
sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 293 tgctaatcttcttggtgaag 312
||||||||||||||||||||
Sbjct: 572 tgctaatcttcttggtgaag 553
>gb|CW348379.1|CW348379 fsbb001f008l17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f008l17, DNA
sequence
Length = 707
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 293 tgctaatcttcttggtgaag 312
||||||||||||||||||||
Sbjct: 586 tgctaatcttcttggtgaag 605
>gb|CW353469.1|CW353469 fsbb001f016d18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016d18, DNA
sequence
Length = 686
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 708 tcggatttcgggctcgccaa 727
||||||||||||||||||||
Sbjct: 358 tcggatttcgggctcgccaa 377
>gb|CW386532.1|CW386532 fsbb001f070h19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f070h19, DNA
sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 456 gtgaagttgtttggtttttgcctt 479
||||| ||||||||||||||||||
Sbjct: 541 gtgaatttgtttggtttttgcctt 518
>gb|CW392251.1|CW392251 fsbb001f078m15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078m15, DNA
sequence
Length = 652
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 708 tcggatttcgggctcgccaa 727
||||||||||||||||||||
Sbjct: 572 tcggatttcgggctcgccaa 591
>gb|CW444467.1|CW444467 fsbb001f166b13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f166b13, DNA
sequence
Length = 683
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 708 tcggatttcgggctcgccaa 727
||||||||||||||||||||
Sbjct: 574 tcggatttcgggctcgccaa 555
>gb|CW451116.1|CW451116 fsbb001f191b01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191b01, DNA
sequence
Length = 554
Score = 40.1 bits (20), Expect = 0.43
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 694 tgaaccctaagatttcggatttcgggct 721
||||||| ||||||||||| ||||||||
Sbjct: 439 tgaaccccaagatttcggacttcgggct 466
>gb|CD461667.1|CD461667 SA1_34_D04.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_34_D04_A002 3', mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.43
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 694 tgaaccctaagatttcggatttcgggct 721
|||| ||||||||||| |||||||||||
Sbjct: 33 tgaatcctaagatttcagatttcgggct 60
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 238,735
Number of Sequences: 832831
Number of extensions: 238735
Number of successful extensions: 63944
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63880
Number of HSP's gapped (non-prelim): 54
length of query: 1130
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1110
effective length of database: 474,703,049
effective search space: 526920384390
effective search space used: 526920384390
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)