BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE36e08.yg.2.1
(352 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW260843.1|CW260843 104_727_11229185_116_35195_067 Sorgh... 492 e-137
gb|CW317729.1|CW317729 104_809_11473568_148_35866_022 Sorgh... 492 e-137
gb|CW090817.1|CW090817 104_436_10949489_114_32604_065 Sorgh... 468 e-130
gb|CW456969.1|CW456969 fsbb001f202j05k0 Sorghum methylation... 280 8e-074
gb|CW268542.1|CW268542 104_739_11401361_148_35310_073 Sorgh... 212 2e-053
gb|CW476670.1|CW476670 fsbb001f233k04k0 Sorghum methylation... 125 3e-027
gb|CW296695.1|CW296695 104_778_11461650_116_35629_069 Sorgh... 113 1e-023
gb|CW104104.1|CW104104 104_473_11012249_116_34444_079 Sorgh... 82 4e-014
gb|CW148316.1|CW148316 104_542_11140356_116_35003_034 Sorgh... 82 4e-014
gb|BG357578.1|BG357578 OV2_31_F04.g1_A002 Ovary 2 (OV2) Sor... 64 9e-009
gb|CW229880.1|CW229880 104_671_11207551_148_37265_026 Sorgh... 62 4e-008
gb|CW246410.1|CW246410 104_707_11221331_116_35084_044 Sorgh... 62 4e-008
gb|CW246411.1|CW246411 104_707_11221331_148_35088_044 Sorgh... 62 4e-008
gb|CW246412.1|CW246412 104_707_11221331_148_37606_044 Sorgh... 62 4e-008
gb|CW296612.1|CW296612 104_778_11461604_116_35629_072 Sorgh... 62 4e-008
gb|CX615412.1|CX615412 GABR1_20_B03.b1_A002 GA- or brassino... 58 6e-007
gb|CX615427.1|CX615427 GABR1_20_C07.b1_A002 GA- or brassino... 58 6e-007
gb|CB927210.1|CB927210 ABA1_14_D11.b1_A012 Abscisic acid-tr... 54 9e-006
gb|CW453205.1|CW453205 fsbb001f197b19f0 Sorghum methylation... 52 3e-005
gb|CW222901.1|CW222901 104_658_11202621_116_37181_087 Sorgh... 42 0.033
gb|CW321938.1|CW321938 104_815_11475822_116_35944_023 Sorgh... 42 0.033
gb|CW329816.1|CW329816 104_826_11480043_116_35995_008 Sorgh... 42 0.033
gb|CW329817.1|CW329817 104_826_11480043_148_35996_008 Sorgh... 42 0.033
gb|CW353584.1|CW353584 fsbb001f016g09f0 Sorghum methylation... 42 0.033
gb|CL191460.1|CL191460 104_410_10906816_114_32533_056 Sorgh... 40 0.13
gb|CW409044.1|CW409044 fsbb001f103d03f0 Sorghum methylation... 40 0.13
gb|CN127827.1|CN127827 RHOH1_25_G03.b1_A002 Acid- and alkal... 40 0.13
gb|CN127905.1|CN127905 RHOH1_25_G03.g1_A002 Acid- and alkal... 40 0.13
>gb|CW260843.1|CW260843 104_727_11229185_116_35195_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229185, DNA
sequence
Length = 629
Score = 492 bits (248), Expect = e-137
Identities = 300/319 (94%)
Strand = Plus / Minus
Query: 1 gcgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 372 gcgggtcgtagttgccgaaccccgtggccagcacgaagaagtggtagccgtggatgtgca 313
Query: 61 tggggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgc 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 312 tggggtgctcctcggcggcgaagatgcccgtgtcctggaacaccatctgcaccaccgcgc 253
Query: 121 cgtacctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgt 180
||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 252 cgtactcgacgcggtacagcttggtgcccttcacgggctgccacagcgcgcgcgggacgt 193
Query: 181 tctgcgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgc 240
||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||
Sbjct: 192 tctgcgaggtgaagtcgaagaacaccggcgggaacgccgggaagtcttcggtgaacacgc 133
Query: 241 cggggatgtggtggtagtgcgcctgcagcagggagacggtgtcggggagctggaacgaca 300
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 132 cggggatgtggtggtagtgcgcctgcagcagggacacggtgttggggagctggaacgaca 73
Query: 301 cgnnnnncatgctcgcgcc 319
|| ||||||||||||
Sbjct: 72 cgttgttcatgctcgcgcc 54
>gb|CW317729.1|CW317729 104_809_11473568_148_35866_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473568, DNA
sequence
Length = 649
Score = 492 bits (248), Expect = e-137
Identities = 300/319 (94%)
Strand = Plus / Plus
Query: 1 gcgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 26 gcgggtcgtagttgccgaaccccgtggccagcacgaagaagtggtagccgtggatgtgca 85
Query: 61 tggggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgc 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 86 tggggtgctcctcggcggcgaagatgcccgtgtcctggaacaccatctgcaccaccgcgc 145
Query: 121 cgtacctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgt 180
||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 146 cgtactcgacgcggtacagcttggtgcccttcacgggctgccacagcgcgcgcgggacgt 205
Query: 181 tctgcgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgc 240
||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||
Sbjct: 206 tctgcgaggtgaagtcgaagaacaccggcgggaacgccgggaagtcttcggtgaacacgc 265
Query: 241 cggggatgtggtggtagtgcgcctgcagcagggagacggtgtcggggagctggaacgaca 300
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 266 cggggatgtggtggtagtgcgcctgcagcagggacacggtgttggggagctggaacgaca 325
Query: 301 cgnnnnncatgctcgcgcc 319
|| ||||||||||||
Sbjct: 326 cgttgttcatgctcgcgcc 344
>gb|CW090817.1|CW090817 104_436_10949489_114_32604_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949489, DNA
sequence
Length = 739
Score = 468 bits (236), Expect = e-130
Identities = 278/292 (95%)
Strand = Plus / Minus
Query: 1 gcgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 292 gcgggtcgtagttgccgaaccccgtggccagcacgaagaagtggtagccgtggatgtgca 233
Query: 61 tggggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgc 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 232 tggggtgctcctcggcggcgaagatgcccgtgtcctggaacaccatctgcaccaccgcgc 173
Query: 121 cgtacctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgt 180
||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 172 cgtactcgacgcggtacagcttggtgcccttcacgggctgccacagcgcgcgcgggacgt 113
Query: 181 tctgcgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgc 240
||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||
Sbjct: 112 tctgcgaggtgaagtcgaagaacaccggcgggaacgccgggaagtcttcggtgaacacgc 53
Query: 241 cggggatgtggtggtagtgcgcctgcagcagggagacggtgtcggggagctg 292
|||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 52 cggggatgtggtggtagtgcgcctgcagcagggacacggtgttggggagctg 1
>gb|CW456969.1|CW456969 fsbb001f202j05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f202j05, DNA
sequence
Length = 502
Score = 280 bits (141), Expect = 8e-074
Identities = 178/192 (92%)
Strand = Plus / Plus
Query: 128 gacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgttctgcga 187
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 8 gacgcggtacagcttggtgcccttcacgggctgccacagcgcgcgcgggacgttctgcga 67
Query: 188 ggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgccggggat 247
|||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 68 ggtgaagtcgaagaacaccggcgggaacgccgggaagtcttcggtgaacacgccggggat 127
Query: 248 gtggtggtagtgcgcctgcagcagggagacggtgtcggggagctggaacgacacgnnnnn 307
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 128 gtggtggtagtgcgcctgcagcagggacacggtgttggggagctggaacgacacgttgtt 187
Query: 308 catgctcgcgcc 319
||||||||||||
Sbjct: 188 catgctcgcgcc 199
>gb|CW268542.1|CW268542 104_739_11401361_148_35310_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401361, DNA
sequence
Length = 748
Score = 212 bits (107), Expect = 2e-053
Identities = 151/163 (92%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 1 gcgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 587 gcgggtcgtagttgccgaaccccgtggccagcacgaagaagtggtagccgtggatgtgca 646
Query: 61 tggggtgctcctcggcggcgaagatgcccgtgtcctgg-aacacgatctgcaccacggcg 119
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct: 647 tggggtgctcctcggcggcgaagatgcccgtgtcctggaaacac-atctgcacccacgcg 705
Query: 120 ccgtacctgacgcggtacaggcgggtgcccttgacgggctgcc 162
|||||| |||||||||||| ||||||||| ||||||||||
Sbjct: 706 ccgtactcgacgcggtacagcttggtgcccttcacgggctgcc 748
>gb|CW476670.1|CW476670 fsbb001f233k04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233k04, DNA
sequence
Length = 457
Score = 125 bits (63), Expect = 3e-027
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 234 aacacgccggggatgtggtggtagtgcgcctgcagcagggagacggtgtcggggagctgg 293
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 457 aacacgccggggatgtggtggtagtgcgcctgcagcagggacacggtgttggggagctgg 398
Query: 294 aacgacacgnnnnncatgctcgcgcc 319
||||||||| ||||||||||||
Sbjct: 397 aacgacacgttgttcatgctcgcgcc 372
>gb|CW296695.1|CW296695 104_778_11461650_116_35629_069 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11461650, DNA sequence
Length = 690
Score = 113 bits (57), Expect = 1e-023
Identities = 60/61 (98%)
Strand = Plus / Minus
Query: 1 gcgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 gcgggtcgtagttgccgaaccccgtggccagcacgaagaagtggtagccgtggatgtgca 2
Query: 61 t 61
|
Sbjct: 1 t 1
>gb|CW104104.1|CW104104 104_473_11012249_116_34444_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012249, DNA
sequence
Length = 624
Score = 81.8 bits (41), Expect = 4e-014
Identities = 167/209 (79%)
Strand = Plus / Plus
Query: 35 gtagaagtggtagccgtggatgtgcatggggtgctcctcggcggcgaagatgcccgtgtc 94
|||||||| |||||| |||| ||| |||||||| | |||||||||||| | | ||| |
Sbjct: 98 gtagaagtcgtagccatggaggtggatggggtggttctcggcggcgaacacgttggtgcc 157
Query: 95 ctggaacacgatctgcaccacggcgccgtacctgacgcggtacaggcgggtgcccttgac 154
||||| ||| | |||||| ||||||||||| ||| | ||||| | ||||||| ||
Sbjct: 158 ctggagcaccagctgcacggcggcgccgtacttgagcctgtacaccctggtgcccggcac 217
Query: 155 gggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcgggag 214
|||||||||||||||||| |||||||||| ||| ||||||| ||| ||||||
Sbjct: 218 gggctgccacagcgcgcggctcacgttctgcgccgtgtagtcgaacgtcaccggcgggtt 277
Query: 215 cgccgggaagtcgtcggtgaacacgccgg 243
|||||||||||| |||||||||||||||
Sbjct: 278 ggccgggaagtcggcggtgaacacgccgg 306
>gb|CW148316.1|CW148316 104_542_11140356_116_35003_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140356, DNA
sequence
Length = 726
Score = 81.8 bits (41), Expect = 4e-014
Identities = 167/209 (79%)
Strand = Plus / Minus
Query: 35 gtagaagtggtagccgtggatgtgcatggggtgctcctcggcggcgaagatgcccgtgtc 94
|||||||| |||||| |||| ||| |||||||| || ||||||||||| | | ||| |
Sbjct: 682 gtagaagtcgtagccatggaggtggatggggtggtcttcggcggcgaacacgttggtgcc 623
Query: 95 ctggaacacgatctgcaccacggcgccgtacctgacgcggtacaggcgggtgcccttgac 154
||||| ||| | |||||| ||||||||||| ||| | ||||| | ||||||| ||
Sbjct: 622 ctggagcaccagctgcacggcggcgccgtacttgagcctgtacaccctggtgcccggcac 563
Query: 155 gggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcgggag 214
|||||||||||||||||| |||||||||| ||| ||||||| ||| ||||||
Sbjct: 562 gggctgccacagcgcgcggctcacgttctgcgccgtgtagtcgaacgtcaccggcgggtt 503
Query: 215 cgccgggaagtcgtcggtgaacacgccgg 243
|||||||||||| |||||||||||||||
Sbjct: 502 ggccgggaagtcggcggtgaacacgccgg 474
>gb|BG357578.1|BG357578 OV2_31_F04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 579
Score = 63.9 bits (32), Expect = 9e-009
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 46 agccgtggatgtgcatggggtgctcctcggcggcgaagatgcccgtgtcctggaacacga 105
||||||||| |||||||||||| |||||| ||| |||| |||||||||||||||| |
Sbjct: 150 agccgtggaggtgcatggggtggctctcggcaccgaggatggccgtgtcctggaacacca 91
Query: 106 tctgcaccacggcgccgtac 125
|| |||||||| |||||||
Sbjct: 90 cctccaccacggtgccgtac 71
>gb|CW229880.1|CW229880 104_671_11207551_148_37265_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207551, DNA
sequence
Length = 661
Score = 61.9 bits (31), Expect = 4e-008
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 153 acgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcggg 212
|||||||||||||||||||| |||||||||| ||| ||||||| ||| ||||||
Sbjct: 532 acgggctgccacagcgcgcggctcacgttctgcgccgtgtagtcgaacgtcaccggcggg 591
Query: 213 agcgccgggaagtcgtcggtgaacacgccgg 243
|||||||||||| |||||||||||||||
Sbjct: 592 ttggccgggaagtcggcggtgaacacgccgg 622
Score = 58.0 bits (29), Expect = 6e-007
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
|||||||||||||| ||| || | |||||||| |||||| |||| ||| |||||||| |
Sbjct: 389 agttgccgaacccctcggcgaggatgtagaagtcgtagccatggaggtggatggggtggt 448
Query: 70 cctcggcggcgaa 82
||||||||||||
Sbjct: 449 tctcggcggcgaa 461
>gb|CW246410.1|CW246410 104_707_11221331_116_35084_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221331, DNA
sequence
Length = 688
Score = 61.9 bits (31), Expect = 4e-008
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 153 acgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcggg 212
|||||||||||||||||||| |||||||||| ||| ||||||| ||| ||||||
Sbjct: 534 acgggctgccacagcgcgcggctcacgttctgcgccgtgtagtcgaacgtcaccggcggg 593
Query: 213 agcgccgggaagtcgtcggtgaacacgccgg 243
|||||||||||| |||||||||||||||
Sbjct: 594 ttggccgggaagtcggcggtgaacacgccgg 624
Score = 58.0 bits (29), Expect = 6e-007
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
|||||||||||||| ||| || | |||||||| |||||| |||| ||| |||||||| |
Sbjct: 391 agttgccgaacccctcggcgaggatgtagaagtcgtagccatggaggtggatggggtggt 450
Query: 70 cctcggcggcgaa 82
||||||||||||
Sbjct: 451 tctcggcggcgaa 463
>gb|CW246411.1|CW246411 104_707_11221331_148_35088_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221331, DNA
sequence
Length = 677
Score = 61.9 bits (31), Expect = 4e-008
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 153 acgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcggg 212
|||||||||||||||||||| |||||||||| ||| ||||||| ||| ||||||
Sbjct: 380 acgggctgccacagcgcgcggctcacgttctgcgccgtgtagtcgaacgtcaccggcggg 321
Query: 213 agcgccgggaagtcgtcggtgaacacgccgg 243
|||||||||||| |||||||||||||||
Sbjct: 320 ttggccgggaagtcggcggtgaacacgccgg 290
Score = 58.0 bits (29), Expect = 6e-007
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
|||||||||||||| ||| || | |||||||| |||||| |||| ||| |||||||| |
Sbjct: 523 agttgccgaacccctcggcgaggatgtagaagtcgtagccatggaggtggatggggtggt 464
Query: 70 cctcggcggcgaa 82
||||||||||||
Sbjct: 463 tctcggcggcgaa 451
>gb|CW246412.1|CW246412 104_707_11221331_148_37606_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221331, DNA
sequence
Length = 680
Score = 61.9 bits (31), Expect = 4e-008
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 153 acgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcggg 212
|||||||||||||||||||| |||||||||| ||| ||||||| ||| ||||||
Sbjct: 380 acgggctgccacagcgcgcggctcacgttctgcgccgtgtagtcgaacgtcaccggcggg 321
Query: 213 agcgccgggaagtcgtcggtgaacacgccgg 243
|||||||||||| |||||||||||||||
Sbjct: 320 ttggccgggaagtcggcggtgaacacgccgg 290
Score = 58.0 bits (29), Expect = 6e-007
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
|||||||||||||| ||| || | |||||||| |||||| |||| ||| |||||||| |
Sbjct: 523 agttgccgaacccctcggcgaggatgtagaagtcgtagccatggaggtggatggggtggt 464
Query: 70 cctcggcggcgaa 82
||||||||||||
Sbjct: 463 tctcggcggcgaa 451
>gb|CW296612.1|CW296612 104_778_11461604_116_35629_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461604, DNA
sequence
Length = 571
Score = 61.9 bits (31), Expect = 4e-008
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 153 acgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcggg 212
|||||||||||||||||||| |||||||||| ||| ||||||| ||| ||||||
Sbjct: 21 acgggctgccacagcgcgcggctcacgttctgcgccgtgtagtcgaacgtcaccggcggg 80
Query: 213 agcgccgggaagtcgtcggtgaacacgccgg 243
|||||||||||| |||||||||||||||
Sbjct: 81 ttggccgggaagtcggcggtgaacacgccgg 111
>gb|CX615412.1|CX615412 GABR1_20_B03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_20_B03_A002 3', mRNA sequence
Length = 684
Score = 58.0 bits (29), Expect = 6e-007
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
|||||||||||||| ||| || | |||||||| |||||| |||| ||| |||||||| |
Sbjct: 211 agttgccgaacccctcggcgaggatgtagaagtcgtagccatggaggtggatggggtggt 152
Query: 70 cctcggcggcgaa 82
||||||||||||
Sbjct: 151 tctcggcggcgaa 139
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 153 acgggctgccacagcgcgcg 172
||||||||||||||||||||
Sbjct: 68 acgggctgccacagcgcgcg 49
>gb|CX615427.1|CX615427 GABR1_20_C07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_20_C07_A002 3', mRNA sequence
Length = 645
Score = 58.0 bits (29), Expect = 6e-007
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
|||||||||||||| ||| || | |||||||| |||||| |||| ||| |||||||| |
Sbjct: 172 agttgccgaacccctcggcgaggatgtagaagtcgtagccatggaggtggatggggtggt 113
Query: 70 cctcggcggcgaa 82
||||||||||||
Sbjct: 112 tctcggcggcgaa 100
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 153 acgggctgccacagcgcgcg 172
||||||||||||||||||||
Sbjct: 29 acgggctgccacagcgcgcg 10
>gb|CB927210.1|CB927210 ABA1_14_D11.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_14_D11_A012 3', mRNA sequence
Length = 543
Score = 54.0 bits (27), Expect = 9e-006
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||||||||||| || ||| || |||||| |||||| ||||||||||| |||||||||
Sbjct: 221 gtcgtagttgccaaagccctgcgcgagcacgaagaagttgtagccgtggaggtgcatggg 162
Query: 65 gtg 67
|||
Sbjct: 161 gtg 159
>gb|CW453205.1|CW453205 fsbb001f197b19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f197b19, DNA
sequence
Length = 575
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 219 gggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgcctgcag 268
||||||||| | ||| ||||||||| ||||| || |||||||||||||||
Sbjct: 299 gggaagtcggccgtgtacacgccggcgatgttgtcgtagtgcgcctgcag 250
>gb|CW222901.1|CW222901 104_658_11202621_116_37181_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202621, DNA
sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.033
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 215 cgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgcctgcagcaggga 274
||||||||||||| |||||| |||||||||| | || ||||||||| || || |||||
Sbjct: 96 cgccgggaagtcggtggtgaagacgccggggaccttgtagtagtgcgcgtggaggaggga 37
Query: 275 g 275
|
Sbjct: 36 g 36
>gb|CW321938.1|CW321938 104_815_11475822_116_35944_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475822, DNA
sequence
Length = 577
Score = 42.1 bits (21), Expect = 0.033
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 215 cgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgcctgcagcaggga 274
||||||||||||| |||||| |||||||||| | || ||||||||| || || |||||
Sbjct: 502 cgccgggaagtcggtggtgaagacgccggggaccttgtagtagtgcgcgtggaggaggga 561
Query: 275 g 275
|
Sbjct: 562 g 562
>gb|CW329816.1|CW329816 104_826_11480043_116_35995_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480043, DNA
sequence
Length = 742
Score = 42.1 bits (21), Expect = 0.033
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 215 cgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgcctgcagcaggga 274
||||||||||||| |||||| |||||||||| | || ||||||||| || || |||||
Sbjct: 659 cgccgggaagtcggtggtgaagacgccggggaccttgtagtagtgcgcgtggaggaggga 600
Query: 275 g 275
|
Sbjct: 599 g 599
>gb|CW329817.1|CW329817 104_826_11480043_148_35996_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480043, DNA
sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.033
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 215 cgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgcctgcagcaggga 274
||||||||||||| |||||| |||||||||| | || ||||||||| || || |||||
Sbjct: 323 cgccgggaagtcggtggtgaagacgccggggaccttgtagtagtgcgcgtggaggaggga 382
Query: 275 g 275
|
Sbjct: 383 g 383
>gb|CW353584.1|CW353584 fsbb001f016g09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016g09, DNA
sequence
Length = 623
Score = 42.1 bits (21), Expect = 0.033
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 215 cgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgcctgcagcaggga 274
||||||||||||| |||||| |||||||||| | || ||||||||| || || |||||
Sbjct: 536 cgccgggaagtcggtggtgaagacgccggggaccttgtagtagtgcgcgtggaggaggga 477
Query: 275 g 275
|
Sbjct: 476 g 476
>gb|CL191460.1|CL191460 104_410_10906816_114_32533_056 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906816, DNA
sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211 ggagcgccgggaagtcgtcg 230
||||||||||||||||||||
Sbjct: 39 ggagcgccgggaagtcgtcg 58
>gb|CW409044.1|CW409044 fsbb001f103d03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f103d03, DNA
sequence
Length = 468
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 211 ggagcgccgggaagtcgtcg 230
||||||||||||||||||||
Sbjct: 446 ggagcgccgggaagtcgtcg 427
>gb|CN127827.1|CN127827 RHOH1_25_G03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_G03_A002 3', mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 211 ggagcgccgggaagtcgtcg 230
||||||||||||||||||||
Sbjct: 173 ggagcgccgggaagtcgtcg 154
>gb|CN127905.1|CN127905 RHOH1_25_G03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_G03_A002 5', mRNA sequence
Length = 741
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 211 ggagcgccgggaagtcgtcg 230
||||||||||||||||||||
Sbjct: 457 ggagcgccgggaagtcgtcg 438
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,507
Number of Sequences: 832831
Number of extensions: 89507
Number of successful extensions: 27363
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27299
Number of HSP's gapped (non-prelim): 52
length of query: 352
length of database: 491,359,669
effective HSP length: 19
effective length of query: 333
effective length of database: 475,535,880
effective search space: 158353448040
effective search space used: 158353448040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)