BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE12f02.yg.2.1
(290 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX618063.1|CX618063 GABR1_37_B05.g1_A002 GA- or brassino... 299 7e-080
gb|BG933529.1|BG933529 WS1_4_E04.b1_A002 Water-stressed 1 (... 248 2e-064
gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Me... 153 1e-035
gb|BF481250.1|BF481250 FM1_17_E01.b1_A003 Floral-Induced Me... 153 1e-035
gb|BI140990.1|BI140990 IP1_41_G10.b1_A002 Immature pannicle... 153 1e-035
gb|BG412467.1|BG412467 OV2_34_E11.g1_A002 Ovary 2 (OV2) Sor... 139 2e-031
gb|BG050984.1|BG050984 FM1_55_A02.b1_A003 Floral-Induced Me... 135 2e-030
gb|CF757235.1|CF757235 DSAF1_15_D07.g1_A011 Drought-stresse... 109 1e-022
gb|CW319522.1|CW319522 104_812_11474531_148_35892_046 Sorgh... 98 5e-019
gb|CD211868.1|CD211868 HS1_67_A05.b1_A012 Heat-shocked seed... 60 1e-007
gb|CX621309.1|CX621309 GABR1_57_H04.b1_A002 GA- or brassino... 56 2e-006
gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorgh... 52 3e-005
gb|AW286294.1|AW286294 LG1_330_A01.g1_A002 Light Grown 1 (L... 52 3e-005
gb|BE598541.1|BE598541 PI1_83_C07.g1_A002 Pathogen induced ... 52 3e-005
gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-tre... 52 3e-005
gb|CF072057.1|CF072057 FE1_20_C10.b1_A002 Iron-deficient se... 44 0.007
gb|BG051682.1|BG051682 FM1_60_A04.g1_A003 Floral-Induced Me... 42 0.027
gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2... 42 0.027
gb|CN132882.1|CN132882 OX1_8_F12.g1_A002 Oxidatively-stress... 42 0.027
gb|CN134554.1|CN134554 OX1_27_C06.b1_A002 Oxidatively-stres... 40 0.11
gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region,... 38 0.42
>gb|CX618063.1|CX618063 GABR1_37_B05.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_B05_A002 5', mRNA sequence
Length = 728
Score = 299 bits (151), Expect = 7e-080
Identities = 195/213 (91%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acattcaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 570
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 571 ggtgtggttgctggtgtttccaacgcaatcaataacggatatgagtcatggggtcccctc 630
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|| ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 631 tttgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 690
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| ||||||||||||||||| ||||||
Sbjct: 691 ttggttggaaggcaaaacaggacaccaacaatt 723
>gb|BG933529.1|BG933529 WS1_4_E04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 466
Score = 248 bits (125), Expect = 2e-064
Identities = 187/214 (87%)
Strand = Plus / Plus
Query: 41 tttgctcctattgaacttcattggtgtggtcgctggtgtttccaatgcaatcaataatgg 100
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 1 tttgctcctattgaacttcattggtgtggttgctggtgtttccaacgcaatcaataacgg 60
Query: 101 atacgagtcatggggnnnnnnnttcgggaagctcttctttgcattttgggtgattgncna 160
||| ||||||||||| || ||||||||||||||||||||||||||||||| | |
Sbjct: 61 atatgagtcatggggtcccctctttgggaagctcttctttgcattttgggtgattgtcca 120
Query: 161 nctgtatcccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattnnnat 220
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct: 121 tctgtatcccttcctcaaaggtttggttggaaggcaaaacaggacaccaacaattgtcat 180
Query: 221 cnnntgnnncatcctgctggcttcaatcttctca 254
| || ||| |||||||||||||||||||||
Sbjct: 181 cgtgtggtccattctgctggcttcaatcttctca 214
>gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 721
Score = 153 bits (77), Expect = 1e-035
Identities = 178/215 (82%)
Strand = Plus / Plus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||| | |||||||||| ||||| |||| ||| |||| ||||
Sbjct: 262 acacattcaaatggacaacccttctgatacctccgaccaccctgcttctactgaatttca 321
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnn 120
|||| || || ||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct: 322 ttggagtagtagctggcgtttccaatgcaatcaacaatggatatgaatcatgggggcccc 381
Query: 121 nnttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaag 180
|||||||||||||||||||||||||||||||||| | | || || || |||||||| |
Sbjct: 382 tgttcgggaagctcttctttgcattttgggtgattgtccatctttacccattcctcaagg 441
Query: 181 gtttggttgggaggcaaaacaggacaccgacaatt 215
|| ||||||||||||| ||||| || || ||||||
Sbjct: 442 gtctggttgggaggcagaacagaacgccaacaatt 476
>gb|BF481250.1|BF481250 FM1_17_E01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 412
Score = 153 bits (77), Expect = 1e-035
Identities = 178/215 (82%)
Strand = Plus / Plus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||| | |||||||||| ||||| |||| ||| |||| ||||
Sbjct: 59 acacattcaaatggacaacccttctgatacctccgaccaccctgcttctactgaatttca 118
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnn 120
|||| || || ||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct: 119 ttggagtagtagctggcgtttccaatgcaatcaacaatggatatgaatcatgggggcccc 178
Query: 121 nnttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaag 180
|||||||||||||||||||||||||||||||||| | | || || || |||||||| |
Sbjct: 179 tgttcgggaagctcttctttgcattttgggtgattgtccatctttacccattcctcaagg 238
Query: 181 gtttggttgggaggcaaaacaggacaccgacaatt 215
|| ||||||||||||| ||||| || || ||||||
Sbjct: 239 gtctggttgggaggcagaacagaacgccaacaatt 273
>gb|BI140990.1|BI140990 IP1_41_G10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 153 bits (77), Expect = 1e-035
Identities = 178/215 (82%)
Strand = Plus / Plus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||| | |||||||||| ||||| |||| ||| |||| ||||
Sbjct: 47 acacattcaaatggacaacccttctgatacctccgaccaccctgcttctactgaatttca 106
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnn 120
|||| || || ||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct: 107 ttggagtagtagctggcgtttccaatgcaatcaacaatggatatgaatcatgggggcccc 166
Query: 121 nnttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaag 180
|||||||||||||||||||||||||||||||||| | | || || || |||||||| |
Sbjct: 167 tgttcgggaagctcttctttgcattttgggtgattgtccatctttacccattcctcaagg 226
Query: 181 gtttggttgggaggcaaaacaggacaccgacaatt 215
|| ||||||||||||| ||||| || || ||||||
Sbjct: 227 gtctggttgggaggcagaacagaacgccaacaatt 261
>gb|BG412467.1|BG412467 OV2_34_E11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 671
Score = 139 bits (70), Expect = 2e-031
Identities = 103/118 (87%)
Strand = Plus / Plus
Query: 137 ctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggca 196
|||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||
Sbjct: 1 ctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttggaaggca 60
Query: 197 aaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatcttctca 254
|||||||||||| |||||| ||| || ||| |||||||||||||||||||||
Sbjct: 61 aaacaggacaccaacaattgtcatcgtgtggtccattctgctggcttcaatcttctca 118
>gb|BG050984.1|BG050984 FM1_55_A02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 362
Score = 135 bits (68), Expect = 2e-030
Identities = 151/182 (82%)
Strand = Plus / Plus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||| | |||||||||| ||||| |||| ||| |||| ||||
Sbjct: 180 acacattcaaatggacaacccttctgatacctccgaccaccctgcttctactgaatttca 239
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnn 120
|||| || || ||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct: 240 ttggagtagtagctggcgtttccaatgcaatcaacaatggatatgaatcatgggggcccc 299
Query: 121 nnttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaag 180
|||||||||||||||||||||||||||||||||| | | || || || ||||||||||
Sbjct: 300 tgttcgggaagctcttctttgcattttgggtgattgtccatctttacccattcctcaaag 359
Query: 181 gt 182
||
Sbjct: 360 gt 361
>gb|CF757235.1|CF757235 DSAF1_15_D07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_15_D07_A011 3', mRNA sequence
Length = 393
Score = 109 bits (55), Expect = 1e-022
Identities = 114/137 (83%)
Strand = Plus / Plus
Query: 79 tttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcgggaagctcttct 138
|||||||||||||||| |||||||| || |||||||| ||||||||||| || |
Sbjct: 1 tttccaatgcaatcaacaatggatatgaatcatggggccccctgttcgggaagctttttt 60
Query: 139 ttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaaa 198
|||||||||||||||||| | | || || || |||||||| ||||||||||||||||| |
Sbjct: 61 ttgcattttgggtgattgtccatctttacccattcctcaagggtttggttgggaggcaga 120
Query: 199 acaggacaccgacaatt 215
|||| || || ||||||
Sbjct: 121 acagaacgccaacaatt 137
>gb|CW319522.1|CW319522 104_812_11474531_148_35892_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474531, DNA
sequence
Length = 715
Score = 97.6 bits (49), Expect = 5e-019
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 167 tcccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattnnnatcnnntg 226
|||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||
Sbjct: 1 tcccttcctcaaaggtttggttggaaggcaaaacaggacaccaacaattgtcatcgtgtg 60
Query: 227 nnncatcctgctggcttcaatcttctca 254
||| |||||||||||||||||||||
Sbjct: 61 gtccattctgctggcttcaatcttctca 88
>gb|CD211868.1|CD211868 HS1_67_A05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_67_A05_A012 3', mRNA sequence
Length = 539
Score = 60.0 bits (30), Expect = 1e-007
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|||||||| ||||| |||| |||| ||||||| ||| ||| ||||||||||
Sbjct: 91 ggtgtggttgctggcacttcctatgcgatcaatagtggttaccagtcatgggggcctctt 150
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
|| |||||||||||||| || ||||||||||||| | | |||| |||||||||||
Sbjct: 151 tttgggaagctcttcttcgcgttttgggtgattgtccacttgtaccccttcctcaa 206
>gb|CX621309.1|CX621309 GABR1_57_H04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_57_H04_A002 3', mRNA sequence
Length = 708
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/63 (82%)
Strand = Plus / Plus
Query: 192 aggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatcttc 251
||||||||||||||||| |||||| ||| || ||| ||||||||||||||||||
Sbjct: 2 aggcaaaacaggacaccaacaattgtcatcgtgtggtccattctgctggcttcaatcttc 61
Query: 252 tca 254
|||
Sbjct: 62 tca 64
>gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11141932, DNA
sequence
Length = 621
Score = 52.0 bits (26), Expect = 3e-005
Identities = 91/116 (78%)
Strand = Plus / Minus
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|||||||| ||||| |||| |||| ||||||| ||| ||| ||||||||||
Sbjct: 301 ggtgtggttgctggcacttcctatgcgatcaatagtggttaccagtcatgggggcctctt 242
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
|| |||||||||||||| || || |||||||||| | | |||| |||||||||||
Sbjct: 241 tttgggaagctcttcttcgcgttctgggtgattgtccacttgtaccccttcctcaa 186
>gb|AW286294.1|AW286294 LG1_330_A01.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 52.0 bits (26), Expect = 3e-005
Identities = 91/116 (78%)
Strand = Plus / Plus
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|||||||| ||||| |||| |||| ||||||| ||| ||| ||||||||||
Sbjct: 91 ggtgtggttgctggcacttcctatgcgatcaatagtggttaccagtcatgggggcctctt 150
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
|| |||||||||||||| || || |||||||||| | | |||| |||||||||||
Sbjct: 151 tttgggaagctcttcttcgcgttctgggtgattgtccacttgtaccccttcctcaa 206
>gb|BE598541.1|BE598541 PI1_83_C07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 400
Score = 52.0 bits (26), Expect = 3e-005
Identities = 91/116 (78%)
Strand = Plus / Plus
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|||||||| ||||| |||| |||| ||||||| ||| ||| ||||||||||
Sbjct: 141 ggtgtggttgctggcacttcctatgcgatcaatagtggttaccagtcatgggggcctctt 200
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
|| |||||||||||||| || || |||||||||| | | |||| |||||||||||
Sbjct: 201 tttgggaagctcttcttcgcgttctgggtgattgtccacttgtaccccttcctcaa 256
>gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_2_G12_A002 3', mRNA sequence
Length = 743
Score = 52.0 bits (26), Expect = 3e-005
Identities = 91/116 (78%)
Strand = Plus / Plus
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|||||||| ||||| |||| |||| ||||||| ||| ||| ||||||||||
Sbjct: 297 ggtgtggttgctggcacttcctatgcgatcaatagtggttaccagtcatgggggcctctt 356
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
|| |||||||||||||| || || |||||||||| | | |||| |||||||||||
Sbjct: 357 tttgggaagctcttcttcgcgttctgggtgattgtccacttgtaccccttcctcaa 412
>gb|CF072057.1|CF072057 FE1_20_C10.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_20_C10_A002 3', mRNA sequence
Length = 666
Score = 44.1 bits (22), Expect = 0.007
Identities = 90/116 (77%)
Strand = Plus / Plus
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|||||||| ||||| |||| |||| ||||||| ||| ||| ||||||||||
Sbjct: 223 ggtgtggttgctggcacttcctatgcgatcaatagtggttaccagtcatgggggcctctt 282
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
|| |||||||||||||| || || ||||||| || | | |||| |||||||||||
Sbjct: 283 tttgggaagctcttcttcgcgttctgggtgactgtccacttgtaccccttcctcaa 338
>gb|BG051682.1|BG051682 FM1_60_A04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 542
Score = 42.1 bits (21), Expect = 0.027
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| ||| ||||||||||||| ||||| || || ||||||
Sbjct: 12 ttcctcaagggtctggttgggaggcagaacagaacgccaacaatt 56
>gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 647
Score = 42.1 bits (21), Expect = 0.027
Identities = 113/146 (77%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||| | ||||||||||| ||||| | ||||| | |||||||| || ||
Sbjct: 226 aaatggaccaccctgttgatacctcccaccacgcttctcctgctcaacttcatcggggtc 285
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| | || || || ||||| || || |||||||||||||| ||||||
Sbjct: 286 gtggctggaatctcgaacgcgatcaacaacgggtacgagtcatggggtcctctcttcggg 345
Query: 129 aagctcttctttgcattttgggtgat 154
||||||||||| || || ||||||||
Sbjct: 346 aagctcttcttcgcgttctgggtgat 371
>gb|CN132882.1|CN132882 OX1_8_F12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_8_F12_A002 5', mRNA sequence
Length = 704
Score = 42.1 bits (21), Expect = 0.027
Identities = 113/146 (77%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||| | ||||| ||||| ||||| | ||||| |||||||||| || ||
Sbjct: 509 aaatggaccaccctgttgatccctccaaccacgcttctcctgctgaacttcatcggggtc 568
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| | || || || ||||| || || |||||||||||||| ||||||
Sbjct: 569 gtggctggaatctcgaacgcgatcaacaacgggtacgagtcatggggtcctctcttcggg 628
Query: 129 aagctcttctttgcattttgggtgat 154
||||||||||| || || ||||||||
Sbjct: 629 aagctcttcttcgcgttctgggtgat 654
>gb|CN134554.1|CN134554 OX1_27_C06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_C06_A002 3', mRNA sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.11
Identities = 43/53 (81%)
Strand = Plus / Plus
Query: 102 tacgagtcatggggnnnnnnnttcgggaagctcttctttgcattttgggtgat 154
|||||||||||||| ||||||||||||||||| || || ||||||||
Sbjct: 33 tacgagtcatggggtcctcttttcgggaagctcttcttcgcgttctgggtgat 85
>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
Length = 268433
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 171 ttcctcaaaggtttggttg 189
|||||||||||||||||||
Sbjct: 186391 ttcctcaaaggtttggttg 186373
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,704
Number of Sequences: 832831
Number of extensions: 51704
Number of successful extensions: 13853
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13805
Number of HSP's gapped (non-prelim): 34
length of query: 290
length of database: 491,359,669
effective HSP length: 19
effective length of query: 271
effective length of database: 475,535,880
effective search space: 128870223480
effective search space used: 128870223480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)