BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD12g05.sg.3.2
(900 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN130320.1|CN130320 RHOH1_40_E07.g1_A002 Acid- and alkal... 928 0.0
gb|CN130246.1|CN130246 RHOH1_40_E07.b1_A002 Acid- and alkal... 704 0.0
gb|BF420890.1|BF420890 OV1_12_E04.b1_A002 Ovary 1 (OV1) Sor... 537 e-151
gb|BF317717.1|BF317717 OV1_12_E04.g1_A002 Ovary 1 (OV1) Sor... 502 e-140
gb|CW174081.1|CW174081 104_586_11157200_148_36564_032 Sorgh... 291 6e-077
gb|CW422004.1|CW422004 fsbb001f131b07f0 Sorghum methylation... 283 1e-074
gb|CW086749.1|CW086749 104_430_10947182_114_33015_049 Sorgh... 258 8e-067
gb|CW401162.1|CW401162 fsbb001f091n08f0 Sorghum methylation... 258 8e-067
gb|CW462064.1|CW462064 fsbb001f210a14f0 Sorghum methylation... 212 4e-053
gb|CF772769.1|CF772769 DSBF1_39_B11.g1_A010 Drought-stresse... 212 4e-053
gb|BE363877.1|BE363877 PI1_10_D05.b1_A002 Pathogen induced ... 210 2e-052
gb|CW184700.1|CW184700 104_602_11165672_148_36691_030 Sorgh... 186 2e-045
gb|CW463673.1|CW463673 fsbb001f212h05k0 Sorghum methylation... 186 2e-045
gb|CW478862.1|CW478862 fsbb001f236p10f0 Sorghum methylation... 186 2e-045
gb|CW467334.1|CW467334 fsbb001f218p20f0 Sorghum methylation... 178 6e-043
gb|BE363946.1|BE363946 PI1_10_D05.g1_A002 Pathogen induced ... 147 2e-033
gb|CW112406.1|CW112406 104_486_11104870_116_34546_091 Sorgh... 139 5e-031
gb|CW237987.1|CW237987 104_694_11216476_148_37490_006 Sorgh... 94 3e-017
gb|CW480782.1|CW480782 fsbb001f240a15f0 Sorghum methylation... 94 3e-017
gb|CW184699.1|CW184699 104_602_11165672_116_36692_030 Sorgh... 74 2e-011
gb|CW237986.1|CW237986 104_694_11216476_116_37489_006 Sorgh... 64 2e-008
gb|BZ345487.1|BZ345487 hr51g07.b1 WGS-SbicolorF (JM107 adap... 48 0.001
gb|CW065530.1|CW065530 104_312_10523200_114_30135 Sorghum m... 48 0.001
gb|CW463672.1|CW463672 fsbb001f212h05f0 Sorghum methylation... 48 0.001
gb|CW478863.1|CW478863 fsbb001f236p10k0 Sorghum methylation... 48 0.001
gb|CW174080.1|CW174080 104_586_11157200_116_36565_032 Sorgh... 42 0.087
gb|BE364008.1|BE364008 PI1_11_G11.b1_A002 Pathogen induced ... 42 0.087
gb|BE364115.1|BE364115 PI1_11_G11.g1_A002 Pathogen induced ... 42 0.087
gb|CW211540.1|CW211540 104_642_11190567_116_37014_058 Sorgh... 40 0.34
gb|AW677496.1|AW677496 DG1_8_A11.b1_A002 Dark Grown 1 (DG1)... 40 0.34
>gb|CN130320.1|CN130320 RHOH1_40_E07.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_E07_A002 5', mRNA sequence
Length = 661
Score = 928 bits (468), Expect = 0.0
Identities = 603/648 (93%)
Strand = Plus / Plus
Query: 61 atcggcgcccgacgcaaggccgagcaggcgatggccgcagcgacgtcaatggggcaccct 120
||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 6 atcggcggctgacgcaaggccgagcaggcgacggccgcagcggcgtcaatggggcaccct 65
Query: 121 tacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccaggtcgag 180
|||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||| ||||
Sbjct: 66 tacgcgccggccgaactggatctgccgggcttcgtgccgctgaagctgtcccaggccgag 125
Query: 181 atcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctcgtctcc 240
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 126 atcctcgtgtcctacctcggcgcctccctcttcgtcctcctcgccgtctggctcgtctcc 185
Query: 241 ggaagatgtgtcagattatccaagaccgaccgtctgctcatgtgctggtgggcatttaca 300
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 186 ggaagatgtggcagattgtccaagaccgaccgtctgctcatgtgctggtgggcattcaca 245
Query: 301 gggttgacccacataatgatcgaggggccctttgtcttcactcctgatttcttcaagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gggttgacccacataatgatcgaggggccctttgtcttcactcctgatttcttcaagaag 305
Query: 361 gagaaccccaatttctttgatgaagtttggaaagagtatagtaagggagactctaggtat 420
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 306 gagaaccccaatttcttcgatgaagtttggaaagagtatagtaagggggactctaggtat 365
Query: 421 gttgctagggacactgcaactgttacggtcgaagggatcaccgctgtattggaaggccct 480
|||||||||||| | ||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 366 gttgctagggacgccgcaactgttactgttgaagggatcactgctgtattggaaggccct 425
Query: 481 gcatcactacttgctgtctacgctattgcatccaggaagtccttcagccacattctccag 540
|||||||| ||||||||||| ||||||| |||| ||||| |||||||||| |||||||||
Sbjct: 426 gcatcactgcttgctgtctatgctattggatcccggaagcccttcagccatattctccag 485
Query: 541 ttcgccgtctgtctgggccagctctacggatgcctggtttacttcatcaccgcgtacttg 600
|| ||||||||||| || ||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 486 tttgccgtctgtctaggtcagctctacggatgcttggtttactttatcaccgcatacttg 545
Query: 601 gacggcttcaacttctgggtcggcccgttctacttctgggcgtatttcattggcgcaaac 660
|| |||||||||||||||||||| || |||||||||||||| ||||||||||| |||||
Sbjct: 546 gatggcttcaacttctgggtcggtccattctacttctgggcatatttcattggtgcaaat 605
Query: 661 agcttctggatctggataccgatgctcatcgccataaggtcctggaag 708
|| |||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 606 agtttctggatttggataccgatgctcattgccataagatcctggaag 653
>gb|CN130246.1|CN130246 RHOH1_40_E07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_E07_A002 3', mRNA sequence
Length = 669
Score = 704 bits (355), Expect = 0.0
Identities = 469/507 (92%)
Strand = Plus / Plus
Query: 239 ccggaagatgtgtcagattatccaagaccgaccgtctgctcatgtgctggtgggcattta 298
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 ccggaagatgtggcagattgtccaagaccgaccgtctgctcatgtgctggtgggcattca 60
Query: 299 cagggttgacccacataatgatcgaggggccctttgtcttcactcctgatttcttcaaga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagggttgacccacataatgatcgaggggccctttgtcttcactcctgatttcttcaaga 120
Query: 359 aggagaaccccaatttctttgatgaagtttggaaagagtatagtaagggagactctaggt 418
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 aggagaaccccaatttcttcgatgaagtttggaaagagtatagtaagggggactctaggt 180
Query: 419 atgttgctagggacactgcaactgttacggtcgaagggatcaccgctgtattggaaggcc 478
|||||||||||||| | ||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 181 atgttgctagggacgccgcaactgttactgttgaagggatcactgctgtattggaaggcc 240
Query: 479 ctgcatcactacttgctgtctacgctattgcatccaggaagtccttcagccacattctcc 538
|||||||||| ||||||||||| ||||||| |||| ||||| |||||||||| |||||||
Sbjct: 241 ctgcatcactgcttgctgtctatgctattggatcccggaagcccttcagccatattctcc 300
Query: 539 agttcgccgtctgtctgggccagctctacggatgcctggtttacttcatcaccgcgtact 598
|||| ||||||||||| || ||||||||||||||| |||||||||| |||||||| ||||
Sbjct: 301 agtttgccgtctgtctaggtcagctctacggatgcttggtttactttatcaccgcatact 360
Query: 599 tggacggcttcaacttctgggtcggcccgttctacttctgggcgtatttcattggcgcaa 658
|||| |||||||||||||||||||| || |||||||||||||| ||||||||||| ||||
Sbjct: 361 tggatggcttcaacttctgggtcggtccattctacttctgggcatatttcattggtgcaa 420
Query: 659 acagcttctggatctggataccgatgctcatcgccataaggtcctggaagaaaacttgcg 718
| || |||||||| ||||||||||||||||| |||||||| ||||||||| ||| ||||
Sbjct: 421 atagtttctggatttggataccgatgctcattgccataagatcctggaaggaaatatgcg 480
Query: 719 ccgcgtttcaagctgagaaggtgaaga 745
| || ||||||||||| ||||||||||
Sbjct: 481 cagcatttcaagctgaaaaggtgaaga 507
Score = 42.1 bits (21), Expect = 0.087
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 842 tgtactctttgctcaaacaaa 862
|||||||||||||||||||||
Sbjct: 613 tgtactctttgctcaaacaaa 633
>gb|BF420890.1|BF420890 OV1_12_E04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 377
Score = 537 bits (271), Expect = e-151
Identities = 333/355 (93%)
Strand = Plus / Plus
Query: 61 atcggcgcccgacgcaaggccgagcaggcgatggccgcagcgacgtcaatggggcaccct 120
||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 20 atcggcggctgacgcaaggccgagcaggcgacggccgcagcggcgtcaatggggcaccct 79
Query: 121 tacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccaggtcgag 180
|||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||| ||||
Sbjct: 80 tacgcgccggccgaactggatctgccgggcttcgtgccgctgaagctgtcccaggccgag 139
Query: 181 atcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctcgtctcc 240
||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 140 atcctcgnnnnctacctcggcgcctccctcttcgtcctcctcgccgtctggctcgtctcc 199
Query: 241 ggaagatgtgtcagattatccaagaccgaccgtctgctcatgtgctggtgggcatttaca 300
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 200 ggaagatgtggcagattgtccaagaccgaccgtctgctcatgtgctggtgggcattcaca 259
Query: 301 gggttgacccacataatgatcgaggggccctttgtcttcactcctgatttcttcaagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gggttgacccacataatgatcgaggggccctttgtcttcactcctgatttcttcaagaag 319
Query: 361 gagaaccccaatttctttgatgaagtttggaaagagtatagtaagggagactcta 415
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 320 gagaaccccaatttcttcgatgaagtttggaaagagtatagtaagggggactcta 374
>gb|BF317717.1|BF317717 OV1_12_E04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 520
Score = 502 bits (253), Expect = e-140
Identities = 358/393 (91%)
Strand = Plus / Plus
Query: 353 tcaagaaggagaaccccaatttctttgatgaagtttggaaagagtatagtaagggagact 412
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 1 tcaagaaggagaaccccaatttcttcgatgaagtttggaaagagtatagtaagggggact 60
Query: 413 ctaggtatgttgctagggacactgcaactgttacggtcgaagggatcaccgctgtattgg 472
|||||||||||||||||||| | ||||||||||| || ||||||||||| ||||||||||
Sbjct: 61 ctaggtatgttgctagggacgccgcaactgttactgttgaagggatcactgctgtattgg 120
Query: 473 aaggccctgcatcactacttgctgtctacgctattgcatccaggaagtccttcagccaca 532
|||||||||||||||| ||||||||||| ||||||| |||| ||||| |||||||||| |
Sbjct: 121 aaggccctgcatcactgcttgctgtctatgctattggatcccggaagcccttcagccata 180
Query: 533 ttctccagttcgccgtctgtctgggccagctctacggatgcctggtttacttcatcaccg 592
|||||||||| ||||||||||| || ||||||||||||||| |||||||||| |||||||
Sbjct: 181 ttctccagtttgccgtctgtctaggtcagctctacggatgcttggtttactttatcaccg 240
Query: 593 cgtacttggacggcttcaacttctgggtcggcccgttctacttctgggcgtatttcattg 652
| |||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 241 catacttggatggcttcaacttctgggtcggtccattctacttctgggcatatttcattg 300
Query: 653 gcgcaaacagcttctggatctggataccgatgctcatcgccataaggtcctggaagaaaa 712
| ||||| || |||||||| ||||||||||||||||| |||||||| ||||||||| |||
Sbjct: 301 gtgcaaatagtttctggatttggataccgatgctcattgccataagatcctggaaggaaa 360
Query: 713 cttgcgccgcgtttcaagctgagaaggtgaaga 745
||||| || ||||||||||| ||||||||||
Sbjct: 361 tatgcgcagcatttcaagctgaaaaggtgaaga 393
>gb|CW174081.1|CW174081 104_586_11157200_148_36564_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157200, DNA
sequence
Length = 603
Score = 291 bits (147), Expect = 6e-077
Identities = 236/265 (89%), Gaps = 3/265 (1%)
Strand = Plus / Plus
Query: 502 gctattgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggccag 561
||||||| |||| |||||||||||||||| ||||||||||| ||||||||||| || |||
Sbjct: 27 gctattggatcccggaagtccttcagccatattctccagtttgccgtctgtctaggtcag 86
Query: 562 ctctacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgggtc 621
|||||||||||| |||||||||| ||||| || |||||||| ||||||||||||||||||
Sbjct: 87 ctctacggatgcttggtttactttatcactgcatacttggatggcttcaacttctgggtc 146
Query: 622 ggcccgttctacttctgggcgtatttcattggcgcaaacagcttctggatctggataccg 681
|| || |||||||||||||| ||||||||||| ||||| || |||||||| |||||||||
Sbjct: 147 ggtccattctacttctgggcatatttcattggtgcaaatagtttctggatttggataccg 206
Query: 682 atgctcatcgccataaggtcctggaagaaaacttgcgccgcgtttcaagctgagaaggtg 741
|||||||| |||||||| ||||||||| ||| ||||| || ||||||||||| |||||
Sbjct: 207 atgctcattgccataagatcctggaaggaaatatgcgcagcatttcaagctgaaaaggt- 265
Query: 742 aagaagaccaaataaaagctgtctt 766
|||||||||||||||||||||||
Sbjct: 266 --gaagaccaaataaaagctgtctt 288
>gb|CW422004.1|CW422004 fsbb001f131b07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f131b07, DNA
sequence
Length = 530
Score = 283 bits (143), Expect = 1e-074
Identities = 229/257 (89%), Gaps = 3/257 (1%)
Strand = Plus / Plus
Query: 510 atccaggaagtccttcagccacattctccagttcgccgtctgtctgggccagctctacgg 569
|||| |||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct: 5 atcccggaagtccttcagccatattctccagtttgccgtctgtctaggtcagctctacgg 64
Query: 570 atgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcccgtt 629
|||| |||||||||| ||||| || |||||||| |||||||||||||||||||| || ||
Sbjct: 65 atgcttggtttactttatcactgcatacttggatggcttcaacttctgggtcggtccatt 124
Query: 630 ctacttctgggcgtatttcattggcgcaaacagcttctggatctggataccgatgctcat 689
|||||||||||| ||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct: 125 ctacttctgggcatatttcattggtgcaaatagtttctggatttggataccgatgctcat 184
Query: 690 cgccataaggtcctggaagaaaacttgcgccgcgtttcaagctgagaaggtgaagaagac 749
|||||||| ||||||||| ||| ||||| || ||||||||||| ||||| ||||||
Sbjct: 185 tgccataagatcctggaaggaaatatgcgcagcatttcaagctgaaaaggt---gaagac 241
Query: 750 caaataaaagctgtctt 766
|||||||||||||||||
Sbjct: 242 caaataaaagctgtctt 258
>gb|CW086749.1|CW086749 104_430_10947182_114_33015_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947182, DNA
sequence
Length = 728
Score = 258 bits (130), Expect = 8e-067
Identities = 169/182 (92%)
Strand = Plus / Minus
Query: 61 atcggcgcccgacgcaaggccgagcaggcgatggccgcagcgacgtcaatggggcaccct 120
||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 425 atcggcggctgacgcaaggccgagcaggcgacggccgcagcggcgtcaatggggcaccct 366
Query: 121 tacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccaggtcgag 180
|||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||| ||||
Sbjct: 365 tacgcgccggccgaactggatctgccgggcttcgtgccgctgaagctgtcccaggccgag 306
Query: 181 atcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctcgtctcc 240
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 305 atcctcgtgtcctacctcggcgcctccctcttcgtcctcctcgccgtctggctcgtctcc 246
Query: 241 gg 242
||
Sbjct: 245 gg 244
>gb|CW401162.1|CW401162 fsbb001f091n08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f091n08, DNA
sequence
Length = 754
Score = 258 bits (130), Expect = 8e-067
Identities = 169/182 (92%)
Strand = Plus / Minus
Query: 61 atcggcgcccgacgcaaggccgagcaggcgatggccgcagcgacgtcaatggggcaccct 120
||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 414 atcggcggctgacgcaaggccgagcaggcgacggccgcagcggcgtcaatggggcaccct 355
Query: 121 tacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccaggtcgag 180
|||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||| ||||
Sbjct: 354 tacgcgccggccgaactggatctgccgggcttcgtgccgctgaagctgtcccaggccgag 295
Query: 181 atcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctcgtctcc 240
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 294 atcctcgtgtcctacctcggcgcctccctcttcgtcctcctcgccgtctggctcgtctcc 235
Query: 241 gg 242
||
Sbjct: 234 gg 233
>gb|CW462064.1|CW462064 fsbb001f210a14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f210a14, DNA
sequence
Length = 675
Score = 212 bits (107), Expect = 4e-053
Identities = 137/147 (93%)
Strand = Plus / Minus
Query: 61 atcggcgcccgacgcaaggccgagcaggcgatggccgcagcgacgtcaatggggcaccct 120
||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 150 atcggcggctgacgcaaggccgagcaggcgacggccgcagcggcgtcaatggggcaccct 91
Query: 121 tacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccaggtcgag 180
|||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||| ||||
Sbjct: 90 tacgcgccggccgaactggatctgccgggcttcgtgccgctgaagctgtcccaggccgag 31
Query: 181 atcctcgtgtcctacctcggcgcctcc 207
|||||||||||||||||||||||||||
Sbjct: 30 atcctcgtgtcctacctcggcgcctcc 4
>gb|CF772769.1|CF772769 DSBF1_39_B11.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_39_B11_A010 3', mRNA sequence
Length = 403
Score = 212 bits (107), Expect = 4e-053
Identities = 178/201 (88%), Gaps = 3/201 (1%)
Strand = Plus / Plus
Query: 566 acggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcc 625
|||||||| |||||||||| ||||| || |||||||| |||||||||||||||||||| |
Sbjct: 1 acggatgcttggtttactttatcactgcatacttggatggcttcaacttctgggtcggtc 60
Query: 626 cgttctacttctgggcgtatttcattggcgcaaacagcttctggatctggataccgatgc 685
| |||||||||||||| ||||||||||| ||||| || |||||||| |||||||||||||
Sbjct: 61 cattctacttctgggcatatttcattggtgcaaatagtttctggatttggataccgatgc 120
Query: 686 tcatcgccataaggtcctggaagaaaacttgcgccgcgtttcaagctgagaaggtgaaga 745
|||| |||||||| ||||||||| ||| ||||| || ||||||||||| ||||| ||
Sbjct: 121 tcattgccataagatcctggaaggaaatatgcgcagcatttcaagctgaaaaggt---ga 177
Query: 746 agaccaaataaaagctgtctt 766
|||||||||||||||||||||
Sbjct: 178 agaccaaataaaagctgtctt 198
Score = 42.1 bits (21), Expect = 0.087
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 841 atgtactctttgctcaaacaa 861
|||||||||||||||||||||
Sbjct: 291 atgtactctttgctcaaacaa 311
>gb|BE363877.1|BE363877 PI1_10_D05.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 472
Score = 210 bits (106), Expect = 2e-052
Identities = 160/178 (89%)
Strand = Plus / Plus
Query: 473 aaggccctgcatcactacttgctgtctacgctattgcatccaggaagtccttcagccaca 532
||||||||||||| || ||||| ||||| || ||||||||| ||||||| | ||||||||
Sbjct: 249 aaggccctgcatcgcttcttgcagtctatgcgattgcatcccggaagtcgtacagccaca 308
Query: 533 ttctccagttcgccgtctgtctgggccagctctacggatgcctggtttacttcatcaccg 592
| |||||||||||||| | |||| ||||||| ||||||||| ||||||||||||||||||
Sbjct: 309 tcctccagttcgccgtttctctgagccagctatacggatgcttggtttacttcatcaccg 368
Query: 593 cgtacttggacggcttcaacttctgggtcggcccgttctacttctgggcgtatttcat 650
|||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct: 369 cgtacttggatggcttcaacttctgggtcagtccgttctacttctgggcatatttcat 426
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 253 agattatccaagaccgaccgtctgctcatgtgctggtggg 292
|||||||||||||||||||| ||||| || |||||||||
Sbjct: 29 agattatccaagaccgaccgcttgctcttgggctggtggg 68
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 335 tcttcactcctgatttcttcaagaaggagaaccccaatttctt 377
||||||| ||||||||| ||| ||||||||||| ||||||||
Sbjct: 111 tcttcacccctgatttcctcagcaaggagaacccaaatttctt 153
>gb|CW184700.1|CW184700 104_602_11165672_148_36691_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165672, DNA
sequence
Length = 654
Score = 186 bits (94), Expect = 2e-045
Identities = 133/146 (91%)
Strand = Plus / Minus
Query: 505 attgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggccagctc 564
||||||||| ||||||| | ||||||||| |||||||||||||| | |||| |||||||
Sbjct: 165 attgcatcccggaagtcgtacagccacatcctccagttcgccgtttctctgagccagcta 106
Query: 565 tacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggc 624
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 105 tacggatgcttggtttacttcatcaccgcgtacttggatggcttcaacttctgggtcagt 46
Query: 625 ccgttctacttctgggcgtatttcat 650
||||||||||||||||| ||||||||
Sbjct: 45 ccgttctacttctgggcatatttcat 20
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 335 tcttcactcctgatttcttcaagaaggagaaccccaatttctt 377
||||||| ||||||||| ||| ||||||||||| ||||||||
Sbjct: 609 tcttcacccctgatttcctcagcaaggagaacccaaatttctt 567
>gb|CW463673.1|CW463673 fsbb001f212h05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f212h05, DNA
sequence
Length = 753
Score = 186 bits (94), Expect = 2e-045
Identities = 133/146 (91%)
Strand = Plus / Minus
Query: 505 attgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggccagctc 564
||||||||| ||||||| | ||||||||| |||||||||||||| | |||| |||||||
Sbjct: 340 attgcatcccggaagtcgtacagccacatcctccagttcgccgtttctctgagccagcta 281
Query: 565 tacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggc 624
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 280 tacggatgcttggtttacttcatcaccgcgtacttggatggcttcaacttctgggtcagt 221
Query: 625 ccgttctacttctgggcgtatttcat 650
||||||||||||||||| ||||||||
Sbjct: 220 ccgttctacttctgggcatatttcat 195
>gb|CW478862.1|CW478862 fsbb001f236p10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236p10, DNA
sequence
Length = 619
Score = 186 bits (94), Expect = 2e-045
Identities = 133/146 (91%)
Strand = Plus / Minus
Query: 505 attgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggccagctc 564
||||||||| ||||||| | ||||||||| |||||||||||||| | |||| |||||||
Sbjct: 269 attgcatcccggaagtcgtacagccacatcctccagttcgccgtttctctgagccagcta 210
Query: 565 tacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggc 624
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 209 tacggatgcttggtttacttcatcaccgcgtacttggatggcttcaacttctgggtcagt 150
Query: 625 ccgttctacttctgggcgtatttcat 650
||||||||||||||||| ||||||||
Sbjct: 149 ccgttctacttctgggcatatttcat 124
>gb|CW467334.1|CW467334 fsbb001f218p20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f218p20, DNA
sequence
Length = 447
Score = 178 bits (90), Expect = 6e-043
Identities = 132/146 (90%)
Strand = Plus / Minus
Query: 505 attgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggccagctc 564
||||||||| ||||||| | ||||||||| |||||||||||||| | |||| |||||||
Sbjct: 270 attgcatcccggaagtcgtacagccacatcctccagttcgccgtttctctgagccagcta 211
Query: 565 tacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggc 624
||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct: 210 tacggatgcttggtttacttcatgaccgcgtacttggatggcttcaacttctgggtcagt 151
Query: 625 ccgttctacttctgggcgtatttcat 650
||||||||||||||||| ||||||||
Sbjct: 150 ccgttctacttctgggcatatttcat 125
>gb|BE363946.1|BE363946 PI1_10_D05.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 460
Score = 147 bits (74), Expect = 2e-033
Identities = 152/178 (85%)
Strand = Plus / Plus
Query: 473 aaggccctgcatcactacttgctgtctacgctattgcatccaggaagtccttcagccaca 532
||||||||||||| || |||| || || || ||||||||| |||||| | ||||||||
Sbjct: 46 aaggccctgcatcgctttttgcagtttatgcgattgcatcccggaagtggtacagccaca 105
Query: 533 ttctccagttcgccgtctgtctgggccagctctacggatgcctggtttacttcatcaccg 592
| |||||||||||||| | | || ||||||| ||||||||| |||||||||||||| |||
Sbjct: 106 tcctccagttcgccgtttttttgagccagctatacggatgcttggtttacttcatccccg 165
Query: 593 cgtacttggacggcttcaacttctgggtcggcccgttctacttctgggcgtatttcat 650
||||||||| ||||||||||| |||||| | ||||||||||| ||||| ||||||||
Sbjct: 166 ggtacttggatggcttcaacttttgggtcagtccgttctacttttgggcatatttcat 223
>gb|CW112406.1|CW112406 104_486_11104870_116_34546_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104870, DNA
sequence
Length = 553
Score = 139 bits (70), Expect = 5e-031
Identities = 151/178 (84%)
Strand = Plus / Minus
Query: 532 attctccagttcgccgtctgtctgggccagctctacggatgcctggtttacttcatcacc 591
||||| |||||| | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 401 attcttcagttcactgtctgcctgggccaactctacgggtgccttgtttacttcatcact 342
Query: 592 gcgtacttggacggcttcaacttctgggtcggcccgttctacttctgggcgtatttcatt 651
|||||||||| ||||||||||||||| || || ||||| |||||||| |||||||||
Sbjct: 341 gcgtacttggctggcttcaacttctggatcactccattctatttctgggcatatttcatt 282
Query: 652 ggcgcaaacagcttctggatctggataccgatgctcatcgccataaggtcctggaaga 709
|| |||||||| |||||| | |||||||| | |||||| ||||| ||| ||||||||
Sbjct: 281 ggtgcaaacagtttctgggtttggataccaacgctcattgccatgaggagctggaaga 224
>gb|CW237987.1|CW237987 104_694_11216476_148_37490_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216476, DNA
sequence
Length = 520
Score = 93.7 bits (47), Expect = 3e-017
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 112 gggcacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcc 171
|||||| | |||||||| || || ||| |||| ||||| |||||||||||| |||||||
Sbjct: 7 gggcacacgtacgcgccggcggacctgcacctcccgggcttcgtgccgctgcagctgtcg 66
Query: 172 caggtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctgg 231
|||| | ||||||||| ||||||| ||| || |||||||||| ||||||||||||||
Sbjct: 67 cagggccagatcctcgccccctacctgggcaccgccgtcttcgtcgtcctcgccgtctgg 126
Query: 232 ctcgtctccgg 242
||| |||||||
Sbjct: 127 ctcctctccgg 137
Score = 60.0 bits (30), Expect = 4e-007
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 256 ttatccaagaccgacc-gtctgctcatgtgctggtgggcatttacagggttgacccacat 314
||||||||||| |||| |||||||||||||||||||||| || || || | ||||||||
Sbjct: 429 ttatccaagacggacccgtctgctcatgtgctggtgggcgttcaccggcctcacccacat 488
Query: 315 aatgatcgaggggccctttgtcttca 340
| ||||||||| |||| |||||||
Sbjct: 489 tgtcatcgagggggccttcgtcttca 514
>gb|CW480782.1|CW480782 fsbb001f240a15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f240a15, DNA
sequence
Length = 545
Score = 93.7 bits (47), Expect = 3e-017
Identities = 110/131 (83%)
Strand = Plus / Minus
Query: 112 gggcacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcc 171
|||||||| |||||||| || || ||| |||| ||||| |||||||||| | |||||||
Sbjct: 264 gggcacccgtacgcgccggcggacctgcacctgccgggcttcgtgccgcagcagctgtcg 205
Query: 172 caggtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctgg 231
|||| | ||||||||| |||||| ||| |||||||| |||| |||||||||||||||
Sbjct: 204 cagggccagatcctcgcccgctacctgggcacctccgtcatcgtcttcctcgccgtctgg 145
Query: 232 ctcgtctccgg 242
||| |||||||
Sbjct: 144 ctcctctccgg 134
>gb|CW184699.1|CW184699 104_602_11165672_116_36692_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165672, DNA
sequence
Length = 574
Score = 73.8 bits (37), Expect = 2e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 505 attgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggccagctc 564
||||||||| ||||||| | ||||||||| |||||||||||||| | |||| |||||||
Sbjct: 506 attgcatcccggaagtcgtacagccacatcctccagttcgccgtttctctgagccagcta 565
Query: 565 tacggatgc 573
|||||||||
Sbjct: 566 tacggatgc 574
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 335 tcttcactcctgatttcttcaagaaggagaaccccaatttctt 377
||||||| ||||||||| ||| ||||||||||| ||||||||
Sbjct: 62 tcttcacccctgatttcctcagcaaggagaacccaaatttctt 104
>gb|CW237986.1|CW237986 104_694_11216476_116_37489_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216476, DNA
sequence
Length = 702
Score = 63.9 bits (32), Expect = 2e-008
Identities = 96/116 (82%), Gaps = 1/116 (0%)
Strand = Plus / Minus
Query: 256 ttatccaagaccgacc-gtctgctcatgtgctggtgggcatttacagggttgacccacat 314
||||||||||| |||| |||||||||||||||||||||| || || || | ||||||||
Sbjct: 413 ttatccaagacggacccgtctgctcatgtgctggtgggcgttcaccggcctcacccacat 354
Query: 315 aatgatcgaggggccctttgtcttcactcctgatttcttcaagaaggagaacccca 370
| ||||||||| |||| ||||||| || | ||||||| |||||||||||||
Sbjct: 353 tgtcatcgagggggccttcgtcttcaaccccggattcttcagcaaggagaacccca 298
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 448 gtcgaagggatcaccgctgtattggaaggccctgcatcactacttgc 494
||||||||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 113 gtcgaagggattacagctgtgttagaaggccctgcgtcactgcttgc 67
>gb|BZ345487.1|BZ345487 hr51g07.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr51g07 5', DNA sequence
Length = 399
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 253 agattatccaagaccgaccgtctgctcatgtgctggtggg 292
|||||||||||||||||||| ||||| || |||||||||
Sbjct: 290 agattatccaagaccgaccgcttgctcttgggctggtggg 251
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 335 tcttcactcctgatttcttcaagaaggagaaccccaatttctt 377
||||||| ||||||||| ||| ||||||||||| ||||||||
Sbjct: 208 tcttcacccctgatttcctcagcaaggagaacccaaatttctt 166
>gb|CW065530.1|CW065530 104_312_10523200_114_30135 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523200, DNA
sequence
Length = 332
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 253 agattatccaagaccgaccgtctgctcatgtgctggtggg 292
|||||||||||||||||||| ||||| || |||||||||
Sbjct: 225 agattatccaagaccgaccgcttgctcttgggctggtggg 186
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 335 tcttcactcctgatttcttcaagaaggagaaccccaatttctt 377
||||||| ||||||||| ||| ||||||||||| ||||||||
Sbjct: 143 tcttcacccctgatttcctcagcaaggagaacccaaatttctt 101
>gb|CW463672.1|CW463672 fsbb001f212h05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f212h05, DNA
sequence
Length = 719
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 253 agattatccaagaccgaccgtctgctcatgtgctggtggg 292
|||||||||||||||||||| ||||| || |||||||||
Sbjct: 614 agattatccaagaccgaccgcttgctcttgggctggtggg 653
>gb|CW478863.1|CW478863 fsbb001f236p10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236p10, DNA
sequence
Length = 607
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 253 agattatccaagaccgaccgtctgctcatgtgctggtggg 292
|||||||||||||||||||| ||||| || |||||||||
Sbjct: 377 agattatccaagaccgaccgcttgctcttgggctggtggg 416
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 335 tcttcactcctgatttcttcaagaaggagaaccccaatttctt 377
||||||| ||||||||| ||| ||||||||||| ||||||||
Sbjct: 459 tcttcacccctgatttcctcagcaaggagaacccaaatttctt 501
>gb|CW174080.1|CW174080 104_586_11157200_116_36565_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157200, DNA
sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.087
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 841 atgtactctttgctcaaacaa 861
|||||||||||||||||||||
Sbjct: 576 atgtactctttgctcaaacaa 556
>gb|BE364008.1|BE364008 PI1_11_G11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 144
Score = 42.1 bits (21), Expect = 0.087
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 842 tgtactctttgctcaaacaaa 862
|||||||||||||||||||||
Sbjct: 46 tgtactctttgctcaaacaaa 66
>gb|BE364115.1|BE364115 PI1_11_G11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 111
Score = 42.1 bits (21), Expect = 0.087
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 842 tgtactctttgctcaaacaaa 862
|||||||||||||||||||||
Sbjct: 46 tgtactctttgctcaaacaaa 66
>gb|CW211540.1|CW211540 104_642_11190567_116_37014_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190567, DNA
sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 516 gaagtccttcagccacattctcca 539
|||||||||||||||| |||||||
Sbjct: 153 gaagtccttcagccaccttctcca 176
>gb|AW677496.1|AW677496 DG1_8_A11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 565
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 516 gaagtccttcagccacattctcca 539
|||||||||||||||| |||||||
Sbjct: 204 gaagtccttcagccaccttctcca 227
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 204,940
Number of Sequences: 832831
Number of extensions: 204940
Number of successful extensions: 55774
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55712
Number of HSP's gapped (non-prelim): 56
length of query: 900
length of database: 491,359,669
effective HSP length: 20
effective length of query: 880
effective length of database: 474,703,049
effective search space: 417738683120
effective search space used: 417738683120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)