BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L20621.2.1
(1220 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW033844.1|CW033844 104_263_10502188_114_30359 Sorghum m... 525 e-147
gb|CX620595.1|CX620595 GABR1_52_G03.g1_A002 GA- or brassino... 500 e-139
gb|CW228650.1|CW228650 104_668_11206494_148_37253_021 Sorgh... 432 e-119
gb|CW228649.1|CW228649 104_668_11206494_116_37254_021 Sorgh... 337 1e-090
gb|CW289715.1|CW289715 104_768_11412628_116_35546_004 Sorgh... 337 1e-090
gb|AW922545.1|AW922545 DG1_20_B04.g1_A002 Dark Grown 1 (DG1... 337 1e-090
gb|BE357457.1|BE357457 DG1_20_B04.b2_A002 Dark Grown 1 (DG1... 337 1e-090
gb|CX619515.1|CX619515 GABR1_46_B03.b1_A002 GA- or brassino... 337 1e-090
gb|CW045261.1|CW045261 104_281_10509453_114_30236 Sorghum m... 329 4e-088
gb|CW289716.1|CW289716 104_768_11412628_148_35550_004 Sorgh... 323 2e-086
gb|CX620512.1|CX620512 GABR1_52_G03.b1_A002 GA- or brassino... 311 8e-083
gb|BZ342488.1|BZ342488 ic83h06.b1 WGS-SbicolorF (JM107 adap... 232 6e-059
gb|CW513474.1|CW513474 115_4_10511640_1_30021 Sorghum unfil... 232 6e-059
gb|BZ342489.1|BZ342489 ic83h06.g1 WGS-SbicolorF (JM107 adap... 220 2e-055
gb|CX620823.1|CX620823 GABR1_54_F04.b1_A002 GA- or brassino... 94 4e-017
gb|CW044699.1|CW044699 104_280_10509107_114_30262 Sorghum m... 72 1e-010
gb|CW243921.1|CW243921 104_704_11220312_116_37580_086 Sorgh... 72 1e-010
gb|CD224241.1|CD224241 CCC1_32_B09.g1_A007 Callus culture/c... 72 1e-010
gb|CW045262.1|CW045262 104_281_10509453_115_30232 Sorghum m... 66 8e-009
gb|CW051311.1|CW051311 104_291_10515176_114_30192 Sorghum m... 66 8e-009
gb|CW241892.1|CW241892 104_701_11219026_116_37558_043 Sorgh... 66 8e-009
gb|AW679848.1|AW679848 WS1_32_F10.g1_A002 Water-stressed 1 ... 66 8e-009
gb|BG357669.1|BG357669 OV2_32_G10.g1_A002 Ovary 2 (OV2) Sor... 66 8e-009
gb|CW199672.1|CW199672 104_624_11183637_116_37058_081 Sorgh... 64 3e-008
gb|CW092958.1|CW092958 104_455_10999481_116_33051_067 Sorgh... 60 5e-007
gb|CW241893.1|CW241893 104_701_11219026_148_37557_043 Sorgh... 60 5e-007
gb|CW303506.1|CW303506 104_788_11465276_116_35694_080 Sorgh... 60 5e-007
gb|CW457734.1|CW457734 fsbb001f203k22k0 Sorghum methylation... 60 5e-007
gb|BE592747.1|BE592747 WS1_95_H02.g1_A002 Water-stressed 1 ... 60 5e-007
gb|CW111876.1|CW111876 104_485_11104574_116_34538_055 Sorgh... 56 8e-006
gb|CW243922.1|CW243922 104_704_11220312_148_37579_086 Sorgh... 54 3e-005
gb|CW158850.1|CW158850 104_564_11149046_148_36401_051 Sorgh... 52 1e-004
gb|CW499023.1|CW499023 fsbb001f293j08f0 Sorghum methylation... 52 1e-004
gb|BG054069.1|BG054069 OV2_3_A08.g1_A002 Ovary 2 (OV2) Sorg... 52 1e-004
gb|CW055261.1|CW055261 104_296_10516987_114_30174 Sorghum m... 46 0.008
gb|CW296338.1|CW296338 104_778_11461451_116_35628_046 Sorgh... 46 0.008
gb|CW340430.1|CW340430 104_841_11485796_116_36149_072 Sorgh... 46 0.008
gb|CW340431.1|CW340431 104_841_11485796_148_36148_072 Sorgh... 46 0.008
gb|CW360216.1|CW360216 fsbb001f028d07f0 Sorghum methylation... 46 0.008
gb|CW489768.1|CW489768 fsbb001f274o07k0 Sorghum methylation... 46 0.008
gb|CL161050.1|CL161050 104_352_10805442_116_31827_114 Sorgh... 44 0.030
gb|CW296339.1|CW296339 104_778_11461451_148_35632_046 Sorgh... 44 0.030
gb|CW299316.1|CW299316 104_782_11463048_148_36236_092 Sorgh... 44 0.030
gb|CW494628.1|CW494628 fsbb001f286a06f0 Sorghum methylation... 44 0.030
gb|CN126890.1|CN126890 RHOH1_19_F07.g1_A002 Acid- and alkal... 44 0.030
gb|CN129651.1|CN129651 RHOH1_36_D03.g1_A002 Acid- and alkal... 44 0.030
gb|BH245471.1|BH245471 pSB0703 S. bicolor BTx623 PstI-diges... 42 0.12
gb|CL185479.1|CL185479 104_399_10899564_116_32395_038 Sorgh... 42 0.12
gb|CW039329.1|CW039329 104_272_10505437_114_30389 Sorghum m... 42 0.12
gb|CW065677.1|CW065677 104_312_10523279_114_30128 Sorghum m... 42 0.12
gb|CW065678.1|CW065678 104_312_10523279_115_30130 Sorghum m... 42 0.12
gb|CW092239.1|CW092239 104_454_10999027_116_33040_070 Sorgh... 42 0.12
gb|CW100060.1|CW100060 104_467_11003896_148_34387_060 Sorgh... 42 0.12
gb|CW108618.1|CW108618 104_480_11097622_148_34498_089 Sorgh... 42 0.12
gb|CW145810.1|CW145810 104_538_11138662_116_34977_087 Sorgh... 42 0.12
gb|CW182785.1|CW182785 104_598_11164264_148_36669_058 Sorgh... 42 0.12
gb|CW234174.1|CW234174 104_687_11213841_116_37381_035 Sorgh... 42 0.12
gb|CW250648.1|CW250648 104_713_11223505_116_35062_015 Sorgh... 42 0.12
gb|CW261049.1|CW261049 104_728_11229298_116_35177_047 Sorgh... 42 0.12
gb|CW261050.1|CW261050 104_728_11229298_148_35173_047 Sorgh... 42 0.12
gb|CW306798.1|CW306798 104_792_11467034_116_35712_005 Sorgh... 42 0.12
gb|CW306799.1|CW306799 104_792_11467034_148_35716_005 Sorgh... 42 0.12
gb|CW354770.1|CW354770 fsbb001f019c01f0 Sorghum methylation... 42 0.12
gb|CW466817.1|CW466817 fsbb001f218d18f0 Sorghum methylation... 42 0.12
gb|AW745404.1|AW745404 WS1_34_G09.b1_A002 Water-stressed 1 ... 42 0.12
gb|BE359699.1|BE359699 DG1_56_B03.b2_A002 Dark Grown 1 (DG1... 42 0.12
gb|BE598764.1|BE598764 PI1_82_F04.b1_A002 Pathogen induced ... 42 0.12
gb|BG050009.1|BG050009 FM1_65_C04.b1_A003 Floral-Induced Me... 42 0.12
gb|BG412301.1|BG412301 OV2_40_C07.b1_A002 Ovary 2 (OV2) Sor... 42 0.12
gb|BG933496.1|BG933496 WS1_4_B04.b1_A002 Water-stressed 1 (... 42 0.12
gb|BI141571.1|BI141571 IP1_54_B04.b1_A002 Immature pannicle... 42 0.12
gb|CD228449.1|CD228449 CCC1_7_A07.g1_A007 Callus culture/ce... 42 0.12
gb|CD427355.1|CD427355 SA1_30_G04.b1_A002 Salicylic acid-tr... 42 0.12
gb|CF434190.1|CF434190 NIT1_32_G10.g1_A002 Nitrogen-deficie... 42 0.12
gb|CF482530.1|CF482530 POL1_7_B12.g1_A002 Pollen Sorghum bi... 42 0.12
gb|CN126194.1|CN126194 RHOH1_15_E08.g1_A002 Acid- and alkal... 42 0.12
gb|CN138418.1|CN138418 OX1_63_E01.g1_A002 Oxidatively-stres... 42 0.12
gb|CN139036.1|CN139036 OX1_15_D03.g1_A002 Oxidatively-stres... 42 0.12
gb|CN145839.1|CN145839 WOUND1_35_D06.g1_A002 Wounded leaves... 42 0.12
gb|CX618922.1|CX618922 GABR1_42_A11.g1_A002 GA- or brassino... 42 0.12
gb|AZ922667.1|AZ922667 SLCot2H04 Sorghum bicolor SLCot Sorg... 40 0.47
gb|BZ341479.1|BZ341479 ic45f04.b1 WGS-SbicolorF (JM107 adap... 40 0.47
gb|BZ346268.1|BZ346268 ht64a01.b1 WGS-SbicolorF (JM107 adap... 40 0.47
gb|BZ350968.1|BZ350968 ht64a01.g1 WGS-SbicolorF (JM107 adap... 40 0.47
gb|CL196659.1|CL196659 104_423_10943204_114_32326_080 Sorgh... 40 0.47
gb|CW032534.1|CW032534 104_261_10501433_115_30364 Sorghum m... 40 0.47
gb|CW033456.1|CW033456 104_263_10501970_114_30359 Sorghum m... 40 0.47
gb|CW033878.1|CW033878 104_263_10502208_114_30359 Sorghum m... 40 0.47
gb|CW045154.1|CW045154 104_281_10509389_114_30236 Sorghum m... 40 0.47
gb|CW061809.1|CW061809 104_305_10520601_115_30153 Sorghum m... 40 0.47
gb|CW087502.1|CW087502 104_432_10947670_114_32551_093 Sorgh... 40 0.47
gb|CW087545.1|CW087545 104_432_10947694_114_32553_093 Sorgh... 40 0.47
gb|CW091762.1|CW091762 104_453_10998753_114_33030_033 Sorgh... 40 0.47
gb|CW118650.1|CW118650 104_495_11108324_148_34699_076 Sorgh... 40 0.47
gb|CW123884.1|CW123884 104_503_11111460_116_34698_042 Sorgh... 40 0.47
gb|CW127272.1|CW127272 104_508_11113348_116_34741_010 Sorgh... 40 0.47
gb|CW157084.1|CW157084 104_560_11147036_148_36385_076 Sorgh... 40 0.47
gb|CW179633.1|CW179633 104_593_11160203_116_36623_034 Sorgh... 40 0.47
gb|CW198678.1|CW198678 104_623_11183102_116_36843_055 Sorgh... 40 0.47
gb|CW198679.1|CW198679 104_623_11183102_148_36842_055 Sorgh... 40 0.47
gb|CW199664.1|CW199664 104_624_11183633_116_37058_065 Sorgh... 40 0.47
gb|CW199665.1|CW199665 104_624_11183633_148_36850_065 Sorgh... 40 0.47
gb|CW218407.1|CW218407 104_652_11196176_116_37532_032 Sorgh... 40 0.47
gb|CW230542.1|CW230542 104_679_11210614_116_37485_089 Sorgh... 40 0.47
gb|CW230543.1|CW230543 104_679_11210614_148_37486_089 Sorgh... 40 0.47
gb|CW235213.1|CW235213 104_690_11214861_148_37413_089 Sorgh... 40 0.47
gb|CW261262.1|CW261262 104_728_11229412_148_35171_010 Sorgh... 40 0.47
gb|CW265100.1|CW265100 104_734_11231675_148_35261_044 Sorgh... 40 0.47
gb|CW270561.1|CW270561 104_742_11402493_116_35332_091 Sorgh... 40 0.47
gb|CW270562.1|CW270562 104_742_11402493_148_35336_091 Sorgh... 40 0.47
gb|CW306546.1|CW306546 104_792_11466901_116_35711_059 Sorgh... 40 0.47
gb|CW306547.1|CW306547 104_792_11466901_148_35715_059 Sorgh... 40 0.47
gb|CW308686.1|CW308686 104_797_11468800_116_35720_060 Sorgh... 40 0.47
gb|CW313246.1|CW313246 104_803_11471185_116_35784_007 Sorgh... 40 0.47
gb|CW315991.1|CW315991 104_807_11472656_148_35847_028 Sorgh... 40 0.47
gb|CW318902.1|CW318902 104_811_11474202_148_35885_075 Sorgh... 40 0.47
gb|CW346364.1|CW346364 104_849_11488985_116_36217_067 Sorgh... 40 0.47
gb|CW346365.1|CW346365 104_849_11488985_148_36218_067 Sorgh... 40 0.47
gb|CW347301.1|CW347301 fsbb001f007c16f0 Sorghum methylation... 40 0.47
gb|CW349526.1|CW349526 fsbb001f010g14f0 Sorghum methylation... 40 0.47
gb|CW349527.1|CW349527 fsbb001f010g14k0 Sorghum methylation... 40 0.47
gb|CW358261.1|CW358261 fsbb001f025f06f0 Sorghum methylation... 40 0.47
gb|CW366458.1|CW366458 fsbb001f039h15f0 Sorghum methylation... 40 0.47
gb|CW389536.1|CW389536 fsbb001f074m10f0 Sorghum methylation... 40 0.47
gb|CW399064.1|CW399064 fsbb001f088m08f0 Sorghum methylation... 40 0.47
gb|CW399065.1|CW399065 fsbb001f088m08k0 Sorghum methylation... 40 0.47
gb|CW429991.1|CW429991 fsbb001f143i05f0 Sorghum methylation... 40 0.47
gb|CW435010.1|CW435010 fsbb001f150p12f0 Sorghum methylation... 40 0.47
gb|CW436557.1|CW436557 fsbb001f153d20f0 Sorghum methylation... 40 0.47
gb|CW453729.1|CW453729 fsbb001f197n19k0 Sorghum methylation... 40 0.47
gb|CW477709.1|CW477709 fsbb001f235c24k0 Sorghum methylation... 40 0.47
gb|CW487407.1|CW487407 fsbb001f253e01k0 Sorghum methylation... 40 0.47
gb|AW564127.1|AW564127 LG1_282_E06.b1_A002 Light Grown 1 (L... 40 0.47
gb|AW678482.1|AW678482 WS1_16_D01.b1_A002 Water-stressed 1 ... 40 0.47
gb|AW678592.1|AW678592 WS1_16_D01.g1_A002 Water-stressed 1 ... 40 0.47
gb|AW679310.1|AW679310 WS1_23_D10.g1_A002 Water-stressed 1 ... 40 0.47
gb|AW746802.1|AW746802 WS1_55_H05.g1_A002 Water-stressed 1 ... 40 0.47
gb|BE125428.1|BE125428 DG1_25_F08.b1_A002 Dark Grown 1 (DG1... 40 0.47
gb|BE352885.1|BE352885 LG1_296_H02.g1_A002 Light Grown 1 (L... 40 0.47
gb|BE352920.1|BE352920 DG1_1_C06.g1_A002 Dark Grown 1 (DG1)... 40 0.47
gb|BE360121.1|BE360121 DG1_61_F10.g1_A002 Dark Grown 1 (DG1... 40 0.47
gb|BE360161.1|BE360161 DG1_61_F10.g2_A002 Dark Grown 1 (DG1... 40 0.47
gb|BE592126.1|BE592126 LG1_224_G02.b2_A002 Light Grown 1 (L... 40 0.47
gb|BE593876.1|BE593876 WS1_103_D11.g1_A002 Water-stressed 1... 40 0.47
gb|BE594194.1|BE594194 WS1_103_D11.b1_A002 Water-stressed 1... 40 0.47
gb|BG053949.1|BG053949 OV2_2_B09.g1_A002 Ovary 2 (OV2) Sorg... 40 0.47
gb|BG322902.1|BG322902 EM1_15_E08.b1_A002 Embryo 1 (EM1) So... 40 0.47
gb|BG355436.1|BG355436 EM1_16_D11.b1_A002 Embryo 1 (EM1) So... 40 0.47
gb|BG411925.1|BG411925 OV2_39_G11.g1_A002 Ovary 2 (OV2) Sor... 40 0.47
gb|BG487551.1|BG487551 EM1_67_D07.b1_A002 Embryo 1 (EM1) So... 40 0.47
gb|BG556424.1|BG556424 EM1_66_H04.g1_A002 Embryo 1 (EM1) So... 40 0.47
gb|BG649534.1|BG649534 EM1_80_E09.b1_A002 Embryo 1 (EM1) So... 40 0.47
gb|BI097886.1|BI097886 IP1_29_C08.g1_A002 Immature pannicle... 40 0.47
gb|BI098520.1|BI098520 IP1_33_D11.g1_A002 Immature pannicle... 40 0.47
gb|BI140907.1|BI140907 IP1_40_F05.b1_A002 Immature pannicle... 40 0.47
gb|BI211331.1|BI211331 IP1_59_D05.b1_A002 Immature pannicle... 40 0.47
gb|BM318757.1|BM318757 PI1_16_F04.g1_A002 Pathogen induced ... 40 0.47
gb|BM327909.1|BM327909 PIC1_18_H11.g1_A002 Pathogen-infecte... 40 0.47
gb|BM327982.1|BM327982 PIC1_19_G10.g1_A002 Pathogen-infecte... 40 0.47
gb|BM328297.1|BM328297 PIC1_23_D08.g1_A002 Pathogen-infecte... 40 0.47
gb|BM328469.1|BM328469 PIC1_29_F03.g1_A002 Pathogen-infecte... 40 0.47
gb|BM330195.1|BM330195 PIC1_48_D02.g1_A002 Pathogen-infecte... 40 0.47
gb|BM331710.1|BM331710 PIC1_59_F11.g1_A002 Pathogen-infecte... 40 0.47
gb|CD204645.1|CD204645 HS1_9_G07.b1_A012 Heat-shocked seedl... 40 0.47
gb|CD206035.1|CD206035 HS1_20_C04.b1_A012 Heat-shocked seed... 40 0.47
gb|CD210597.1|CD210597 HS1_48_H04.g1_A012 Heat-shocked seed... 40 0.47
gb|CD224131.1|CD224131 CCC1_32_B09.b1_A007 Callus culture/c... 40 0.47
gb|CD430766.1|CD430766 ETH1_5_C12.b1_A002 Ethylene-treated ... 40 0.47
gb|CD461473.1|CD461473 SA1_32_A03.b1_A002 Salicylic acid-tr... 40 0.47
gb|CF433765.1|CF433765 NIT1_30_D12.b1_A002 Nitrogen-deficie... 40 0.47
gb|CF486205.1|CF486205 POL1_36_H06.b1_A002 Pollen Sorghum b... 40 0.47
gb|CF757484.1|CF757484 DSAF1_18_E05.g1_A011 Drought-stresse... 40 0.47
gb|CF758112.1|CF758112 DSAF1_27_E04.g1_A011 Drought-stresse... 40 0.47
gb|CF771342.1|CF771342 DSBF1_17_H05.g1_A010 Drought-stresse... 40 0.47
gb|CF771491.1|CF771491 DSBF1_20_B11.g1_A010 Drought-stresse... 40 0.47
gb|CN124191.1|CN124191 RHOH1_3_E03.b1_A002 Acid- and alkali... 40 0.47
gb|CN124340.1|CN124340 RHOH1_4_D03.b1_A002 Acid- and alkali... 40 0.47
gb|CN124465.1|CN124465 RHOH1_5_A08.b1_A002 Acid- and alkali... 40 0.47
gb|CN124539.1|CN124539 RHOH1_5_A08.g1_A002 Acid- and alkali... 40 0.47
gb|CN129199.1|CN129199 RHOH1_34_C05.b3_A002 Acid- and alkal... 40 0.47
gb|CN133074.1|CN133074 OX1_10_B04.b1_A002 Oxidatively-stres... 40 0.47
gb|CN133269.1|CN133269 OX1_11_E04.b1_A002 Oxidatively-stres... 40 0.47
gb|CN135040.1|CN135040 OX1_30_D11.b1_A002 Oxidatively-stres... 40 0.47
gb|CN136500.1|CN136500 OX1_43_A12.g1_A002 Oxidatively-stres... 40 0.47
gb|CN137001.1|CN137001 OX1_54_C11.g1_A002 Oxidatively-stres... 40 0.47
emb|X16104.1|SBKAFGK1 Sorghum DNA for kafirin, pGK1 40 0.47
gb|AF474132.1| Sorghum bicolor typical P-type R2R3 Myb prot... 40 0.47
gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete seq... 40 0.47
gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete se... 40 0.47
gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete s... 40 0.47
gb|AC169374.1| Sorghum bicolor clone SB_BBc0019I06, WORKING... 40 0.47
>gb|CW033844.1|CW033844 104_263_10502188_114_30359 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502188, DNA
sequence
Length = 589
Score = 525 bits (265), Expect = e-147
Identities = 322/341 (94%)
Strand = Plus / Minus
Query: 243 ctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcgtg 302
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 516 ctggacgggaaggtggccattgtgacgggcggcgcgaggggcatcggcgaggccatcgtg 457
Query: 303 cggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgcgggg 362
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 456 aggctgttcgtgaagcacggggcccgggtggtgatcgcggacatcgacgacgccgccggg 397
Query: 363 gaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtccgtg 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 396 gaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtcggtg 337
Query: 423 gaggacgacgtccggcgcgccgtggactgggcgctgtcgcgccacggcggccgcctcgac 482
||||| |||||| |||||||||||| |||||||||||||| |||||||| || || |||
Sbjct: 336 gaggaggacgtcgcgcgcgccgtggagtgggcgctgtcgcggcacggcgggcgtctggac 277
Query: 483 gtctactgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctg 542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 276 gtctactgcaacaacgccggggtgctgggccgccagacgcgcgccgccaagagcatcctg 217
Query: 543 tccttcgacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 216 tccttcgacgcgggcgagttcgaccgcgtgctccgtgtcaa 176
Score = 157 bits (79), Expect = 3e-036
Identities = 103/111 (92%)
Strand = Plus / Minus
Query: 645 gggagcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcc 704
||||||||||||||||||||||||||||||| ||||| |||||||| || || ||||||
Sbjct: 111 gggagcatcgtctccgtcgccagcgtcgcgggggtgctcggcggcctggggccacacgcc 52
Query: 705 tacaccgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgc 755
|||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 51 tacaccgcctccaagcacgccatcgtggggctcaccaagaacgcggcctgc 1
>gb|CX620595.1|CX620595 GABR1_52_G03.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_52_G03_A002 5', mRNA sequence
Length = 437
Score = 500 bits (252), Expect = e-139
Identities = 309/328 (94%)
Strand = Plus / Plus
Query: 82 catacatgcacgctagcctcgcctcctacgccgcggcagctatgccggcgctggacctcc 141
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 110 catacatgcacgcgagcctcgcctcctacgcagcggcagctatgccggcgctcgacctcc 169
Query: 142 gccccgagatagcgcacgcgcaccagcccgtcatgtcgccctctcaccacggctgggacg 201
|||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 170 gccccgagatggcgcacgcccaccagcccgtcatgtcgccgtcgcaccacggctgggacg 229
Query: 202 gcaatggcgccacagccgtgcccacaccgatgcccaagaggctggacgggaaggtggcca 261
||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 230 gcaatggcgccgcagtcgtgcccactcctatgcccaagagactggacgggaaggtggcca 289
Query: 262 ttgtgacgggcggcgcgcgcgggatcggcgaggccatcgtgcggctgttcgccaagcacg 321
||||||||||||||||| | || |||||||||||||||||| ||||||||| |||||||
Sbjct: 290 ttgtgacgggcggcgcgaggggcatcggcgaggccatcgtgaggctgttcgtgaagcacg 349
Query: 322 gggcccgggtggtgatcgcggacatcgacgacgccgcgggggaggcgctggcgtcggcgc 381
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 350 gggcccgggtggtgatcgcggacatcgacgacgccgccggggaggcgctggcgtcggcgc 409
Query: 382 tgggcccgcaggtcagcttcgtgcgctg 409
||||||||||||||||||||||||||||
Sbjct: 410 tgggcccgcaggtcagcttcgtgcgctg 437
>gb|CW228650.1|CW228650 104_668_11206494_148_37253_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206494, DNA
sequence
Length = 496
Score = 432 bits (218), Expect = e-119
Identities = 266/282 (94%)
Strand = Plus / Plus
Query: 243 ctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcgtg 302
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 215 ctggacgggaaggtggccattgtgacgggcggcgcgaggggcatcggcgaggccatcgtg 274
Query: 303 cggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgcgggg 362
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 275 aggctgttcgtgaagcacggggcccgggtggtgatcgcggacatcgacgacgccgccggg 334
Query: 363 gaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtccgtg 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 335 gaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtcggtg 394
Query: 423 gaggacgacgtccggcgcgccgtggactgggcgctgtcgcgccacggcggccgcctcgac 482
||||| |||||| |||||||||||| |||||||||||||| |||||||| || || |||
Sbjct: 395 gaggaggacgtcgcgcgcgccgtggagtgggcgctgtcgcggcacggcgggcgtctggac 454
Query: 483 gtctactgcaacaacgccggggtgctgggccgccagacgcgc 524
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gtctactgcaacaacgccggggtgctgggccgccagacgcgc 496
Score = 151 bits (76), Expect = 2e-034
Identities = 100/108 (92%)
Strand = Plus / Plus
Query: 135 gacctccgccccgagatagcgcacgcgcaccagcccgtcatgtcgccctctcaccacggc 194
||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||
Sbjct: 3 gacctccgccccgagatggcgcacgcccaccagcccgtcatgtcgccgtcgcaccacggc 62
Query: 195 tgggacggcaatggcgccacagccgtgcccacaccgatgcccaagagg 242
|||||||||||||||||| ||| ||||||||| || ||||||||||||
Sbjct: 63 tgggacggcaatggcgccgcagtcgtgcccactcctatgcccaagagg 110
>gb|CW228649.1|CW228649 104_668_11206494_116_37254_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206494, DNA
sequence
Length = 599
Score = 337 bits (170), Expect = 1e-090
Identities = 209/222 (94%)
Strand = Plus / Minus
Query: 878 cgacctcgacctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggt 937
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 357 cgacctcgacctcgacatcaccgtgcccagcgacgaggaggtggagaagatggaggaggt 298
Query: 938 ggtcaggggcctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggc 997
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 297 ggtcagggggctggccacgctcaagggccccacgctgagacccagggacatcgccgaggc 238
Query: 998 ggtgctcttcctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtgga 1057
||||||||||||||||||||||||| | || ||||| || ||||||||||| ||||||||
Sbjct: 237 ggtgctcttcctggccagcgacgagtcaagatatatctccggccacaacctcgtcgtgga 178
Query: 1058 cggcggcgtcaccacatccaggaacctcatcggcttgtgaat 1099
||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 177 cggcggcgtcaccacctccaggaacctgatcggcttgtgaat 136
Score = 311 bits (157), Expect = 8e-083
Identities = 218/237 (91%), Gaps = 1/237 (0%)
Strand = Plus / Minus
Query: 645 gggagcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcc 704
||||||||||||||||||||||||||||||| ||||| | |||||| || || ||||||
Sbjct: 577 gggagcatcgtctccgtcgccagcgtcgcgggggtgctcg-cggcctggggccacacgcc 519
Query: 705 tacaccgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgc 764
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 518 tacaccgcctccaagcacgccatcgtggggctcaccaagaacgcggcctgcgagctcggc 459
Query: 765 gcgcacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatc 824
|||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 458 gcgcacggcatccgcgtcaactgcgtgtcgcccttcggcgtcgccacgcccatgctcatc 399
Query: 825 aacgcctggcgccagggccacgacgacgccaccgccgacgccgaccgagacctcgac 881
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct: 398 aacgcctggcgccagggccacgacgacggcgccgccgacgccgacctcgacctcgac 342
Score = 77.8 bits (39), Expect = 2e-012
Identities = 46/47 (97%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 1174 tagttgtacttgaagtgatcgattttcatttggttgattgattcatc 1220
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 81 tagttgtacttgaagtgatcga-tttcatttggttgattgattcatc 36
>gb|CW289715.1|CW289715 104_768_11412628_116_35546_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412628, DNA
sequence
Length = 516
Score = 337 bits (170), Expect = 1e-090
Identities = 209/222 (94%)
Strand = Plus / Minus
Query: 878 cgacctcgacctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggt 937
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 310 cgacctcgacctcgacatcaccgtgcccagcgacgaggaggtggagaagatggaggaggt 251
Query: 938 ggtcaggggcctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggc 997
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 250 ggtcagggggctggccacgctcaagggccccacgctgagacccagggacatcgccgaggc 191
Query: 998 ggtgctcttcctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtgga 1057
||||||||||||||||||||||||| | || ||||| || ||||||||||| ||||||||
Sbjct: 190 ggtgctcttcctggccagcgacgagtcaagatatatctccggccacaacctcgtcgtgga 131
Query: 1058 cggcggcgtcaccacatccaggaacctcatcggcttgtgaat 1099
||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 130 cggcggcgtcaccacctccaggaacctgatcggcttgtgaat 89
Score = 297 bits (150), Expect = 1e-078
Identities = 204/222 (91%)
Strand = Plus / Minus
Query: 660 gtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcctacaccgcctccaag 719
|||||||||||||||| ||||| |||||||| || || |||||||||||||||||||||
Sbjct: 516 gtcgccagcgtcgcgggggtgctcggcggcctggggccacacgcctacaccgcctccaag 457
Query: 720 cacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgcgcgcacggggtccgg 779
||||||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 456 cacgccatcgtggggctcaccaagaacgcggcctgcgagctcggcgcgcacggcatccgc 397
Query: 780 gtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatcaacgcctggcgccag 839
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtcaactgcgtgtcgcccttcggcgtcgccacgcccatgctcatcaacgcctggcgccag 337
Query: 840 ggccacgacgacgccaccgccgacgccgaccgagacctcgac 881
||||||||||||| | ||||||||||||||| |||||||||
Sbjct: 336 ggccacgacgacggcgccgccgacgccgacctcgacctcgac 295
Score = 54.0 bits (27), Expect = 3e-005
Identities = 34/35 (97%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 1174 tagttgtacttgaagtgatcgattttcatttggtt 1208
|||||||||||||||||||||| ||||||||||||
Sbjct: 34 tagttgtacttgaagtgatcga-tttcatttggtt 1
>gb|AW922545.1|AW922545 DG1_20_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 337 bits (170), Expect = 1e-090
Identities = 209/222 (94%)
Strand = Plus / Plus
Query: 878 cgacctcgacctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggt 937
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 13 cgacctcgacctcgacatcaccgtgcccagcgacgaggaggtggagaagatggaggaggt 72
Query: 938 ggtcaggggcctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggc 997
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 73 ggtcagggggctggccacgctcaagggccccacgctgagacccagggacatcgccgaggc 132
Query: 998 ggtgctcttcctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtgga 1057
||||||||||||||||||||||||| | || ||||| || ||||||||||| ||||||||
Sbjct: 133 ggtgctcttcctggccagcgacgagtcaagatatatctccggccacaacctcgtcgtgga 192
Query: 1058 cggcggcgtcaccacatccaggaacctcatcggcttgtgaat 1099
||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 193 cggcggcgtcaccacctccaggaacctgatcggcttgtgaat 234
Score = 77.8 bits (39), Expect = 2e-012
Identities = 46/47 (97%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1174 tagttgtacttgaagtgatcgattttcatttggttgattgattcatc 1220
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 289 tagttgtacttgaagtgatcga-tttcatttggttgattgattcatc 334
>gb|BE357457.1|BE357457 DG1_20_B04.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 337 bits (170), Expect = 1e-090
Identities = 209/222 (94%)
Strand = Plus / Plus
Query: 878 cgacctcgacctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggt 937
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 81 cgacctcgacctcgacatcaccgtgcccagcgacgaggaggtggagaagatggaggaggt 140
Query: 938 ggtcaggggcctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggc 997
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 141 ggtcagggggctggccacgctcaagggccccacgctgagacccagggacatcgccgaggc 200
Query: 998 ggtgctcttcctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtgga 1057
||||||||||||||||||||||||| | || ||||| || ||||||||||| ||||||||
Sbjct: 201 ggtgctcttcctggccagcgacgagtcaagatatatctccggccacaacctcgtcgtgga 260
Query: 1058 cggcggcgtcaccacatccaggaacctcatcggcttgtgaat 1099
||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 261 cggcggcgtcaccacctccaggaacctgatcggcttgtgaat 302
Score = 143 bits (72), Expect = 4e-032
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 794 gcccttcggcgtcgccacgcccatgctcatcaacgcctggcgccagggccacgacgacgc 853
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gcccttcggcgtcgccacgcccatgctcatcaacgcctggcgccagggccacgacgacgg 68
Query: 854 caccgccgacgccgaccgagacctcgac 881
| ||||||||||||||| |||||||||
Sbjct: 69 cgccgccgacgccgacctcgacctcgac 96
Score = 77.8 bits (39), Expect = 2e-012
Identities = 46/47 (97%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1174 tagttgtacttgaagtgatcgattttcatttggttgattgattcatc 1220
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 357 tagttgtacttgaagtgatcga-tttcatttggttgattgattcatc 402
>gb|CX619515.1|CX619515 GABR1_46_B03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_46_B03_A002 3', mRNA sequence
Length = 602
Score = 337 bits (170), Expect = 1e-090
Identities = 209/222 (94%)
Strand = Plus / Plus
Query: 878 cgacctcgacctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggt 937
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 135 cgacctcgacctcgacatcaccgtgcccagcgacgaggaggtggagaagatggaggaggt 194
Query: 938 ggtcaggggcctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggc 997
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 195 ggtcagggggctggccacgctcaagggccccacgctgagacccagggacatcgccgaggc 254
Query: 998 ggtgctcttcctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtgga 1057
||||||||||||||||||||||||| | || ||||| || ||||||||||| ||||||||
Sbjct: 255 ggtgctcttcctggccagcgacgagtcaagatatatctccggccacaacctcgtcgtgga 314
Query: 1058 cggcggcgtcaccacatccaggaacctcatcggcttgtgaat 1099
||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 315 cggcggcgtcaccacctccaggaacctgatcggcttgtgaat 356
Score = 210 bits (106), Expect = 2e-052
Identities = 139/150 (92%)
Strand = Plus / Plus
Query: 732 gggctcaccaagaacgccgcctgcgagctgcgcgcgcacggggtccgggtcaactgcgtc 791
||||||||||||||||| ||||||||||| |||||||||| |||| |||||||||||
Sbjct: 1 gggctcaccaagaacgcggcctgcgagctcggcgcgcacggcatccgcgtcaactgcgtg 60
Query: 792 tcgcccttcggcgtcgccacgcccatgctcatcaacgcctggcgccagggccacgacgac 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcgcccttcggcgtcgccacgcccatgctcatcaacgcctggcgccagggccacgacgac 120
Query: 852 gccaccgccgacgccgaccgagacctcgac 881
| | ||||||||||||||| |||||||||
Sbjct: 121 ggcgccgccgacgccgacctcgacctcgac 150
Score = 77.8 bits (39), Expect = 2e-012
Identities = 46/47 (97%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1174 tagttgtacttgaagtgatcgattttcatttggttgattgattcatc 1220
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 411 tagttgtacttgaagtgatcga-tttcatttggttgattgattcatc 456
>gb|CW045261.1|CW045261 104_281_10509453_114_30236 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509453, DNA
sequence
Length = 505
Score = 329 bits (166), Expect = 4e-088
Identities = 208/222 (93%)
Strand = Plus / Minus
Query: 878 cgacctcgacctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggt 937
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 334 cgacctcgacctcgacatcaccgtgcccagcgacgaggaggtggagaagatggaggaggt 275
Query: 938 ggtcaggggcctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggc 997
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 274 ggtcagggggctggccacgctcaagggccccacgctgagacccagggacatcgccgaggc 215
Query: 998 ggtgctcttcctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtgga 1057
||||||||||||||||||||||||| | || ||||| || ||||||||||| ||||||||
Sbjct: 214 ggtgctcttcctggccagcgacgagtcaagatatatctccggccacaacctcgtcgtgga 155
Query: 1058 cggcggcgtcaccacatccaggaacctcatcggcttgtgaat 1099
||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 154 cggcggcgtcaccacctccaggaacctgattggcttgtgaat 113
Score = 260 bits (131), Expect = 3e-067
Identities = 170/183 (92%)
Strand = Plus / Minus
Query: 699 cacgcctacaccgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgag 758
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 501 cacgcctacaccgcctccaagcacgccatcgtggggctcaccaagaacgcggcttgcgag 442
Query: 759 ctgcgcgcgcacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatg 818
|| |||||||||| |||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ctcggcgcgcacggcatccgcgtcaactgcgtgtcgcccttcggcgtcgccacgcccatg 382
Query: 819 ctcatcaacgcctggcgccagggccacgacgacgccaccgccgacgccgaccgagacctc 878
|||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 381 ctcatcaacgcctggcgccagggccacgacgacggcgccgccgacgccgacctcgacctc 322
Query: 879 gac 881
|||
Sbjct: 321 gac 319
Score = 77.8 bits (39), Expect = 2e-012
Identities = 46/47 (97%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 1174 tagttgtacttgaagtgatcgattttcatttggttgattgattcatc 1220
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 58 tagttgtacttgaagtgatcga-tttcatttggttgattgattcatc 13
>gb|CW289716.1|CW289716 104_768_11412628_148_35550_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412628, DNA
sequence
Length = 244
Score = 323 bits (163), Expect = 2e-086
Identities = 215/231 (93%), Gaps = 1/231 (0%)
Strand = Plus / Plus
Query: 243 ctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcgtg 302
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 2 ctggacgggaaggtggccattgtgacgggcggcgcgaggggcatcggcgaggccatcgtg 61
Query: 303 cggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgcgggg 362
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 62 aggctgttcgtgaagcacggggcccgggtggtgatcgcggacatcgacgacgccgccggg 121
Query: 363 gaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtccgtg 422
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 122 gaggcgctggcgtcggcgctgggcccgcatgtcagcttcgtgcgctgcgacgtgtcggtg 181
Query: 423 gaggacgacgtccg-gcgcgccgtggactgggcgctgtcgcgccacggcgg 472
||||| ||||| || ||||||| |||| ||||||||||| || ||||||||
Sbjct: 182 gaggaggacgttcgcgcgcgccctggattgggcgctgtctcggcacggcgg 232
>gb|CX620512.1|CX620512 GABR1_52_G03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_52_G03_A002 3', mRNA sequence
Length = 344
Score = 311 bits (157), Expect = 8e-083
Identities = 193/205 (94%)
Strand = Plus / Plus
Query: 895 tcaccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggcctggcca 954
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2 tcaccgtgcccagcgacgaggaggtggagaagatggaggaggtggtcagggggctggcca 61
Query: 955 cgctcaagggccccacgctcaggcccagggacatcgccgaggcggtgctcttcctggcca 1014
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 62 cgctcaagggccccacgctgagacccagggacatcgccgaggcggtgctcttcctggcca 121
Query: 1015 gcgacgaggccaggtatatatcgggccacaaccttgtcgtggacggcggcgtcaccacat 1074
|||||||| | || ||||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct: 122 gcgacgagtcaagatatatttccggccacaacctcgtcgtggacggcggcgtcaccacct 181
Query: 1075 ccaggaacctcatcggcttgtgaat 1099
|||||||||| ||||||||||||||
Sbjct: 182 ccaggaacctgatcggcttgtgaat 206
Score = 77.8 bits (39), Expect = 2e-012
Identities = 46/47 (97%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1174 tagttgtacttgaagtgatcgattttcatttggttgattgattcatc 1220
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tagttgtacttgaagtgatcga-tttcatttggttgattgattcatc 306
>gb|BZ342488.1|BZ342488 ic83h06.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic83h06 5', DNA sequence
Length = 650
Score = 232 bits (117), Expect = 6e-059
Identities = 150/161 (93%)
Strand = Plus / Minus
Query: 82 catacatgcacgctagcctcgcctcctacgccgcggcagctatgccggcgctggacctcc 141
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 391 catacatgcacgcgagcctcgcctcctacgcagcggcagctatgccggcgctcgacctcc 332
Query: 142 gccccgagatagcgcacgcgcaccagcccgtcatgtcgccctctcaccacggctgggacg 201
|||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 331 gccccgagatggcgcacgcccaccagcccgtcatgtcgccgtcgcaccacggctgggacg 272
Query: 202 gcaatggcgccacagccgtgcccacaccgatgcccaagagg 242
||||||||||| ||| ||||||||| || ||||||||||||
Sbjct: 271 gcaatggcgccgcagtcgtgcccactcctatgcccaagagg 231
Score = 194 bits (98), Expect = 1e-047
Identities = 119/126 (94%)
Strand = Plus / Minus
Query: 243 ctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcgtg 302
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 126 ctggacgggaaggtggccattgtgacgggcggcgcgaggggcatcggcgaggccatcgtg 67
Query: 303 cggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgcgggg 362
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 66 aggctgttcgtgaagcacggggcccgggtggtgatcgcggacatcgacgacgccgccggg 7
Query: 363 gaggcg 368
||||||
Sbjct: 6 gaggcg 1
>gb|CW513474.1|CW513474 115_4_10511640_1_30021 Sorghum unfiltered library (LibID: 115)
Sorghum bicolor genomic clone 10511640, DNA sequence
Length = 638
Score = 232 bits (117), Expect = 6e-059
Identities = 150/161 (93%)
Strand = Plus / Minus
Query: 82 catacatgcacgctagcctcgcctcctacgccgcggcagctatgccggcgctggacctcc 141
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 368 catacatgcacgcgagcctcgcctcctacgcagcggcagctatgccggcgctcgacctcc 309
Query: 142 gccccgagatagcgcacgcgcaccagcccgtcatgtcgccctctcaccacggctgggacg 201
|||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 308 gccccgagatggcgcacgcccaccagcccgtcatgtcgccgtcgcaccacggctgggacg 249
Query: 202 gcaatggcgccacagccgtgcccacaccgatgcccaagagg 242
||||||||||| ||| ||||||||| || ||||||||||||
Sbjct: 248 gcaatggcgccgcagtcgtgcccactcctatgcccaagagg 208
Score = 157 bits (79), Expect = 3e-036
Identities = 97/103 (94%)
Strand = Plus / Minus
Query: 243 ctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcgtg 302
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 103 ctggacgggaaggtggccattgtgacgggcggcgcgaggggcatcggcgaggccatcgtg 44
Query: 303 cggctgttcgccaagcacggggcccgggtggtgatcgcggaca 345
||||||||| |||||||||||||||||||||||||||||||
Sbjct: 43 aggctgttcgtgaagcacggggcccgggtggtgatcgcggaca 1
>gb|BZ342489.1|BZ342489 ic83h06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic83h06 5', DNA sequence
Length = 410
Score = 220 bits (111), Expect = 2e-055
Identities = 147/159 (92%)
Strand = Plus / Plus
Query: 84 tacatgcacgctagcctcgcctcctacgccgcggcagctatgccggcgctggacctccgc 143
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 191 tacatgcacgcgagcctcgcctcctacgcagcggcagctatgccggcgctcgacctccgc 250
Query: 144 cccgagatagcgcacgcgcaccagcccgtcatgtcgccctctcaccacggctgggacggc 203
|||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 251 cccgagatggcgcacgcccaccagcccgtcatgtcgccgtcgcaccacggctgggacggc 310
Query: 204 aatggcgccacagccgtgcccacaccgatgcccaagagg 242
|||||||| ||| ||||||||| || ||||||||||||
Sbjct: 311 catggcgccgcagtcgtgcccactcctatgcccaagagg 349
>gb|CX620823.1|CX620823 GABR1_54_F04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_54_F04_A002 3', mRNA sequence
Length = 319
Score = 93.7 bits (47), Expect = 4e-017
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1029 tatatatcgggccacaaccttgtcgtggacggcggcgtcaccacatccaggaacctcatc 1088
||||| || ||||||||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct: 6 tatatttccggccacaacctcgtagtggacggcggcgtcaccacctccaggaacctgatc 65
Query: 1089 ggcttgtgaat 1099
|||||||||||
Sbjct: 66 ggcttgtgaat 76
Score = 77.8 bits (39), Expect = 2e-012
Identities = 46/47 (97%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1174 tagttgtacttgaagtgatcgattttcatttggttgattgattcatc 1220
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 129 tagttgtacttgaagtgatcga-tttcatttggttgattgattcatc 174
>gb|CW044699.1|CW044699 104_280_10509107_114_30262 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509107, DNA
sequence
Length = 452
Score = 71.9 bits (36), Expect = 1e-010
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| |||||||| || ||||||||||||||| ||||||||||||||||
Sbjct: 318 tggacggcaaggtggcgatcgtgacgggcggcgcgagcgggatcggcgaggc 369
>gb|CW243921.1|CW243921 104_704_11220312_116_37580_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220312, DNA
sequence
Length = 689
Score = 71.9 bits (36), Expect = 1e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| |||||||| || ||||||||||||||| ||||||||||||||||
Sbjct: 155 tggacggcaaggtggcgatcgtgacgggcggcgcgagcgggatcggcgaggc 104
>gb|CD224241.1|CD224241 CCC1_32_B09.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_32_B09_A007 5', mRNA sequence
Length = 460
Score = 71.9 bits (36), Expect = 1e-010
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| |||||||| || ||||||||||||||| ||||||||||||||||
Sbjct: 55 tggacggcaaggtggcgatcgtgacgggcggcgcgagcgggatcggcgaggc 106
>gb|CW045262.1|CW045262 104_281_10509453_115_30232 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509453, DNA
sequence
Length = 81
Score = 65.9 bits (33), Expect = 8e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 186 caccacggctgggacggcaatggcgccacagccgtgcccacaccgatgcccaa 238
|||||||||||||||||||||||||||||| | ||||||| || ||||||||
Sbjct: 12 caccacggctgggacggcaatggcgccacaaacatgcccactcctatgcccaa 64
>gb|CW051311.1|CW051311 104_291_10515176_114_30192 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515176, DNA
sequence
Length = 308
Score = 65.9 bits (33), Expect = 8e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 684 ggcggcctcggcccgcacgcctacaccgcctccaagcacgccatcgtcgggctcaccaag 743
||||| || ||||||||||| ||||| || |||||||||||| | |||||||||||||||
Sbjct: 191 ggcgggctgggcccgcacgcgtacacggcgtccaagcacgccgtggtcgggctcaccaag 250
Query: 744 a 744
|
Sbjct: 251 a 251
>gb|CW241892.1|CW241892 104_701_11219026_116_37558_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219026, DNA
sequence
Length = 409
Score = 65.9 bits (33), Expect = 8e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 684 ggcggcctcggcccgcacgcctacaccgcctccaagcacgccatcgtcgggctcaccaag 743
||||| || ||||||||||| ||||| || |||||||||||| | |||||||||||||||
Sbjct: 164 ggcgggctgggcccgcacgcgtacacggcgtccaagcacgccgtggtcgggctcaccaag 223
Query: 744 a 744
|
Sbjct: 224 a 224
>gb|AW679848.1|AW679848 WS1_32_F10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 65.9 bits (33), Expect = 8e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 684 ggcggcctcggcccgcacgcctacaccgcctccaagcacgccatcgtcgggctcaccaag 743
||||| || ||||||||||| ||||| || |||||||||||| | |||||||||||||||
Sbjct: 3 ggcgggctgggcccgcacgcgtacacggcgtccaagcacgccgtggtcgggctcaccaag 62
Query: 744 a 744
|
Sbjct: 63 a 63
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 977 gcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggta 1030
||||| |||| ||||| |||||||||| | |||||||||||||||||| |||||
Sbjct: 239 gcccaaggacgtcgcccaggcggtgctatacctggccagcgacgaggcgaggta 292
>gb|BG357669.1|BG357669 OV2_32_G10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 660
Score = 65.9 bits (33), Expect = 8e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 684 ggcggcctcggcccgcacgcctacaccgcctccaagcacgccatcgtcgggctcaccaag 743
||||| || ||||||||||| ||||| || |||||||||||| | |||||||||||||||
Sbjct: 189 ggcgggctgggcccgcacgcgtacacggcgtccaagcacgccgtggtcgggctcaccaag 248
Query: 744 a 744
|
Sbjct: 249 a 249
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 977 gcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggta 1030
||||| |||| ||||| |||||||||| | |||||||||||||||||| |||||
Sbjct: 425 gcccaaggacgtcgcccaggcggtgctatacctggccagcgacgaggcgaggta 478
>gb|CW199672.1|CW199672 104_624_11183637_116_37058_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183637, DNA
sequence
Length = 419
Score = 63.9 bits (32), Expect = 3e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 693 ggcccgcacgcctacaccgcctccaagcacgccatcgtcgggctcaccaaga 744
||||||||||| ||||| || |||||||||||| | ||||||||||||||||
Sbjct: 228 ggcccgcacgcgtacacggcgtccaagcacgccgtggtcgggctcaccaaga 177
>gb|CW092958.1|CW092958 104_455_10999481_116_33051_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999481, DNA
sequence
Length = 327
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 977 gcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggta 1030
||||| |||| ||||| |||||||||| | |||||||||||||||||| |||||
Sbjct: 293 gcccaaggacgtcgcccaggcggtgctatacctggccagcgacgaggcgaggta 240
>gb|CW241893.1|CW241893 104_701_11219026_148_37557_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219026, DNA
sequence
Length = 649
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 977 gcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggta 1030
||||| |||| ||||| |||||||||| | |||||||||||||||||| |||||
Sbjct: 527 gcccaaggacgtcgcccaggcggtgctatacctggccagcgacgaggcgaggta 474
>gb|CW303506.1|CW303506 104_788_11465276_116_35694_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465276, DNA
sequence
Length = 571
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 977 gcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggta 1030
||||| |||| ||||| |||||||||| | |||||||||||||||||| |||||
Sbjct: 446 gcccaaggacgtcgcccaggcggtgctatacctggccagcgacgaggcgaggta 393
>gb|CW457734.1|CW457734 fsbb001f203k22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203k22, DNA
sequence
Length = 502
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 977 gcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggta 1030
||||| |||| ||||| |||||||||| | |||||||||||||||||| |||||
Sbjct: 285 gcccaaggacgtcgcccaggcggtgctatacctggccagcgacgaggcgaggta 232
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 705 tacaccgcctccaagcacgccatcgtcgggctcaccaaga 744
||||| || |||||||||||| | ||||||||||||||||
Sbjct: 500 tacacggcgtccaagcacgccgtggtcgggctcaccaaga 461
>gb|BE592747.1|BE592747 WS1_95_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 268
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 977 gcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggta 1030
||||| |||| ||||| |||||||||| | |||||||||||||||||| |||||
Sbjct: 87 gcccaaggacgtcgcccaggcggtgctatacctggccagcgacgaggcgaggta 140
>gb|CW111876.1|CW111876 104_485_11104574_116_34538_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104574, DNA
sequence
Length = 401
Score = 56.0 bits (28), Expect = 8e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 693 ggcccgcacgcctacaccgcctccaagcacgccatcgtcgggctcaccaaga 744
||||||||||||||||| | ||| |||||||| | ||||||||||||||||
Sbjct: 279 ggcccgcacgcctacacagtgtcccagcacgccgtggtcgggctcaccaaga 330
>gb|CW243922.1|CW243922 104_704_11220312_148_37579_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220312, DNA
sequence
Length = 620
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggat 286
||||||| |||||||| || ||||||||||||||| |||||||
Sbjct: 578 tggacggcaaggtggcgatcgtgacgggcggcgcgagcgggat 620
>gb|CW158850.1|CW158850 104_564_11149046_148_36401_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149046, DNA
sequence
Length = 686
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 768 cacggggtccgggtcaactgcgtctcgccc 797
|||||| |||||||||||||||||||||||
Sbjct: 294 cacgggatccgggtcaactgcgtctcgccc 265
>gb|CW499023.1|CW499023 fsbb001f293j08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293j08, DNA
sequence
Length = 616
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 768 cacggggtccgggtcaactgcgtctcgccc 797
|||||| |||||||||||||||||||||||
Sbjct: 247 cacgggatccgggtcaactgcgtctcgccc 218
>gb|BG054069.1|BG054069 OV2_3_A08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 415
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 768 cacggggtccgggtcaactgcgtctcgccc 797
|||||| |||||||||||||||||||||||
Sbjct: 13 cacgggatccgggtcaactgcgtctcgccc 42
>gb|CW055261.1|CW055261 104_296_10516987_114_30174 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516987,
DNA sequence
Length = 615
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaacaaca 79
|||||||||||||||||||||||
Sbjct: 66 acacagcagcagcaacaacaaca 44
>gb|CW296338.1|CW296338 104_778_11461451_116_35628_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461451, DNA
sequence
Length = 532
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaacaaca 79
|||||||||||||||||||||||
Sbjct: 214 acacagcagcagcaacaacaaca 192
>gb|CW340430.1|CW340430 104_841_11485796_116_36149_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485796, DNA
sequence
Length = 724
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaacaaca 79
|||||||||||||||||||||||
Sbjct: 491 acacagcagcagcaacaacaaca 469
>gb|CW340431.1|CW340431 104_841_11485796_148_36148_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485796, DNA
sequence
Length = 728
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 acacagcagcagcaacaacaaca 79
|||||||||||||||||||||||
Sbjct: 410 acacagcagcagcaacaacaaca 432
>gb|CW360216.1|CW360216 fsbb001f028d07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028d07, DNA
sequence
Length = 481
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 acacagcagcagcaacaacaaca 79
|||||||||||||||||||||||
Sbjct: 140 acacagcagcagcaacaacaaca 162
>gb|CW489768.1|CW489768 fsbb001f274o07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f274o07, DNA
sequence
Length = 707
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaacaaca 79
|||||||||||||||||||||||
Sbjct: 676 acacagcagcagcaacaacaaca 654
>gb|CL161050.1|CL161050 104_352_10805442_116_31827_114 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805442, DNA
sequence
Length = 668
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacata 81
||||||||||||||||||||||
Sbjct: 253 cagcagcagcaacaacaacata 274
>gb|CW296339.1|CW296339 104_778_11461451_148_35632_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461451, DNA
sequence
Length = 631
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 acacagcagcagcaacaacaac 78
||||||||||||||||||||||
Sbjct: 610 acacagcagcagcaacaacaac 631
>gb|CW299316.1|CW299316 104_782_11463048_148_36236_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463048, DNA
sequence
Length = 697
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacata 81
||||||||||||||||||||||
Sbjct: 619 cagcagcagcaacaacaacata 640
>gb|CW494628.1|CW494628 fsbb001f286a06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286a06, DNA
sequence
Length = 752
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacata 81
||||||||||||||||||||||
Sbjct: 378 cagcagcagcaacaacaacata 399
>gb|CN126890.1|CN126890 RHOH1_19_F07.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_19_F07_A002 5', mRNA sequence
Length = 840
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 cacagcagcagcaacaacaaca 79
||||||||||||||||||||||
Sbjct: 1 cacagcagcagcaacaacaaca 22
>gb|CN129651.1|CN129651 RHOH1_36_D03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_D03_A002 5', mRNA sequence
Length = 844
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 cacagcagcagcaacaacaaca 79
||||||||||||||||||||||
Sbjct: 4 cacagcagcagcaacaacaaca 25
>gb|BH245471.1|BH245471 pSB0703 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB0703 similar to
CONSTANS-like protein 1; controls flowering time
(AAC99309), DNA sequence
Length = 931
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacat 80
|||||||||||||||||||||
Sbjct: 7 cagcagcagcaacaacaacat 27
>gb|CL185479.1|CL185479 104_399_10899564_116_32395_038 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899564, DNA
sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 230 gacctcgacctcgacctcgac 250
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 224 gacctcgacctcgacctcgac 244
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 218 gacctcgacctcgacctcgac 238
>gb|CW039329.1|CW039329 104_272_10505437_114_30389 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505437,
DNA sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacat 80
|||||||||||||||||||||
Sbjct: 5 cagcagcagcaacaacaacat 25
>gb|CW065677.1|CW065677 104_312_10523279_114_30128 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523279, DNA
sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 563 gacctcgacctcgacctcgac 543
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 874 acctcgacctcgacctcgac 893
||||||||||||||||||||
Sbjct: 568 acctcgacctcgacctcgac 549
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 504,852
Number of Sequences: 832831
Number of extensions: 504852
Number of successful extensions: 153934
Number of sequences better than 0.5: 191
Number of HSP's better than 0.5 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153222
Number of HSP's gapped (non-prelim): 676
length of query: 1220
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1200
effective length of database: 474,703,049
effective search space: 569643658800
effective search space used: 569643658800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)