BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021176.2.1
(1318 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW166934.1|CW166934 104_575_11153325_116_36768_081 Sorgh... 716 0.0
gb|CW400147.1|CW400147 fsbb001f090f06f0 Sorghum methylation... 682 0.0
gb|CW270551.1|CW270551 104_742_11402487_116_35332_060 Sorgh... 630 e-179
gb|CW270552.1|CW270552 104_742_11402487_148_35336_060 Sorgh... 450 e-124
gb|CW166935.1|CW166935 104_575_11153325_148_36767_081 Sorgh... 202 6e-050
gb|CW166936.1|CW166936 104_575_11153326_148_36766_081 Sorgh... 202 6e-050
gb|CW391673.1|CW391673 fsbb001f077o23f0 Sorghum methylation... 135 1e-029
gb|CW072243.1|CW072243 104_325_10592151_116_30541 Sorghum m... 119 7e-025
gb|CW241279.1|CW241279 104_700_11218680_148_37541_090 Sorgh... 119 7e-025
gb|CW251968.1|CW251968 104_714_11224234_116_35067_033 Sorgh... 119 7e-025
gb|CW490208.1|CW490208 fsbb001f275i13k0 Sorghum methylation... 119 7e-025
gb|CF428909.1|CF428909 PH1_18_E02.g1_A002 Phosphorous-defic... 119 7e-025
gb|CW390164.1|CW390164 fsbb001f075l10f0 Sorghum methylation... 117 3e-024
gb|CW463792.1|CW463792 fsbb001f212k15k0 Sorghum methylation... 117 3e-024
gb|CF426915.1|CF426915 PH1_2_A02.g1_A002 Phosphorous-defici... 117 3e-024
gb|CW315799.1|CW315799 104_807_11472554_116_35843_015 Sorgh... 107 3e-021
gb|CD235577.1|CD235577 SS1_36_G11.g1_A012 Salt-stressed see... 107 3e-021
gb|CF427457.1|CF427457 PH1_1_D07.g1_A002 Phosphorous-defici... 107 3e-021
gb|CF433982.1|CF433982 NIT1_31_D04.g1_A002 Nitrogen-deficie... 107 3e-021
gb|CN130629.1|CN130629 RHOH1_42_F06.g1_A002 Acid- and alkal... 107 3e-021
gb|CN138740.1|CN138740 OX1_13_D08.g1_A002 Oxidatively-stres... 107 3e-021
gb|CX606349.1|CX606349 ANR1_2_C01.g1_A002 Anaerobic roots S... 107 3e-021
gb|CX609133.1|CX609133 ANR1_10_G12.g1_A002 Anaerobic roots ... 107 3e-021
gb|CX615009.1|CX615009 GABR1_17_D03.g1_A002 GA- or brassino... 107 3e-021
gb|CX618625.1|CX618625 GABR1_40_E09.g1_A002 GA- or brassino... 107 3e-021
gb|CL174521.1|CL174521 104_379_10891693_116_31769_061 Sorgh... 105 1e-020
gb|CW040234.1|CW040234 104_273_10505995_114_30263 Sorghum m... 105 1e-020
gb|CN128152.1|CN128152 RHOH1_27_H02.b1_A002 Acid- and alkal... 105 1e-020
gb|CX610812.1|CX610812 ANR1_21_A08.b1_A002 Anaerobic roots ... 105 1e-020
gb|CW245585.1|CW245585 104_706_11221046_116_35081_055 Sorgh... 103 4e-020
gb|CW245586.1|CW245586 104_706_11221046_116_37600_055 Sorgh... 103 4e-020
gb|CW265262.1|CW265262 104_734_11231767_116_35257_024 Sorgh... 103 4e-020
gb|BG487479.1|BG487479 EM1_65_E08.b1_A002 Embryo 1 (EM1) So... 103 4e-020
gb|BG487560.1|BG487560 EM1_67_E09.b1_A002 Embryo 1 (EM1) So... 103 4e-020
gb|BG739542.1|BG739542 EM1_82_B10.b1_A002 Embryo 1 (EM1) So... 103 4e-020
gb|CD224076.1|CD224076 CCC1_31_H11.g1_A007 Callus culture/c... 103 4e-020
gb|CD225005.1|CD225005 CCC1_37_F06.g1_A007 Callus culture/c... 103 4e-020
gb|CD225472.1|CD225472 CCC1_3_D06.g1_A007 Callus culture/ce... 103 4e-020
gb|CD226863.1|CD226863 CCC1_48_H08.g1_A007 Callus culture/c... 103 4e-020
gb|CD227802.1|CD227802 CCC1_53_C05.g1_A007 Callus culture/c... 103 4e-020
gb|CD227894.1|CD227894 CCC1_56_D12.g1_A007 Callus culture/c... 103 4e-020
gb|CD227920.1|CD227920 CCC1_56_D09.g1_A007 Callus culture/c... 103 4e-020
gb|CD228642.1|CD228642 CCC1_8_A01.g1_A007 Callus culture/ce... 103 4e-020
gb|CD229676.1|CD229676 CCC1_18_F05.g1_A007 Callus culture/c... 103 4e-020
gb|CD229899.1|CD229899 CCC1_20_C06.g1_A007 Callus culture/c... 103 4e-020
gb|CD430045.1|CD430045 ETH1_13_E09.g1_A002 Ethylene-treated... 103 4e-020
gb|CF427473.1|CF427473 PH1_1_H09.g1_A002 Phosphorous-defici... 103 4e-020
gb|CF432714.1|CF432714 NIT1_18_G04.g1_A002 Nitrogen-deficie... 103 4e-020
gb|CN127915.1|CN127915 RHOH1_25_H02.g1_A002 Acid- and alkal... 103 4e-020
gb|CX607132.1|CX607132 ANR1_6_H04.g1_A002 Anaerobic roots S... 103 4e-020
gb|CX610612.1|CX610612 ANR1_19_F05.g1_A002 Anaerobic roots ... 103 4e-020
gb|CX621063.1|CX621063 GABR1_55_F07.g1_A002 GA- or brassino... 103 4e-020
gb|CX610895.1|CX610895 ANR1_21_A08.g1_A002 Anaerobic roots ... 101 2e-019
gb|CN131509.1|CN131509 RHOH1_48_C08.g1_A002 Acid- and alkal... 100 6e-019
gb|CX615362.1|CX615362 GABR1_19_E05.g1_A002 GA- or brassino... 100 6e-019
gb|CX616037.1|CX616037 GABR1_25_B02.g1_A002 GA- or brassino... 100 6e-019
gb|CW113669.1|CW113669 104_488_11105572_148_34562_014 Sorgh... 98 3e-018
gb|CW201025.1|CW201025 104_626_11184349_148_36933_051 Sorgh... 98 3e-018
gb|CD223344.1|CD223344 CCC1_27_G12.g1_A007 Callus culture/c... 96 1e-017
gb|CF426888.1|CF426888 PH1_2_A02.b1_A002 Phosphorous-defici... 92 2e-016
gb|CW323217.1|CW323217 104_817_11476514_116_35958_009 Sorgh... 88 2e-015
gb|CW170038.1|CW170038 104_580_11154992_148_36515_028 Sorgh... 86 1e-014
gb|CW245587.1|CW245587 104_706_11221046_148_35077_055 Sorgh... 86 1e-014
gb|CW245588.1|CW245588 104_706_11221046_148_37599_055 Sorgh... 86 1e-014
gb|CW390165.1|CW390165 fsbb001f075l10k0 Sorghum methylation... 86 1e-014
gb|BG487643.1|BG487643 EM1_65_E08.g1_A002 Embryo 1 (EM1) So... 86 1e-014
gb|BG556244.1|BG556244 EM1_67_E09.g1_A002 Embryo 1 (EM1) So... 86 1e-014
gb|BG739375.1|BG739375 EM1_82_B10.g1_A002 Embryo 1 (EM1) So... 86 1e-014
gb|CD219479.1|CD219479 CCC1_57_E11.b1_A007 Callus culture/c... 86 1e-014
gb|CD223319.1|CD223319 CCC1_27_G12.b1_A007 Callus culture/c... 86 1e-014
gb|CD223966.1|CD223966 CCC1_31_H11.b1_A007 Callus culture/c... 86 1e-014
gb|CD224897.1|CD224897 CCC1_37_F06.b1_A007 Callus culture/c... 86 1e-014
gb|CD226775.1|CD226775 CCC1_48_H08.b1_A007 Callus culture/c... 86 1e-014
gb|CD227695.1|CD227695 CCC1_53_E04.b1_A007 Callus culture/c... 86 1e-014
gb|CD227701.1|CD227701 CCC1_53_E01.b1_A007 Callus culture/c... 86 1e-014
gb|CN126295.1|CN126295 RHOH1_16_G06.b1_A002 Acid- and alkal... 86 1e-014
gb|CN126384.1|CN126384 RHOH1_16_G06.g1_A002 Acid- and alkal... 86 1e-014
gb|CX607040.1|CX607040 ANR1_6_H04.b1_A002 Anaerobic roots S... 86 1e-014
gb|CX610525.1|CX610525 ANR1_19_F05.b1_A002 Anaerobic roots ... 86 1e-014
gb|CL150226.1|CL150226 104_331_10778370_114_31355_306 Sorgh... 80 6e-013
gb|CW257668.1|CW257668 104_723_11227460_148_35155_076 Sorgh... 80 6e-013
gb|CF431046.1|CF431046 NIT1_4_B04.g1_A002 Nitrogen-deficien... 80 6e-013
gb|BZ348485.1|BZ348485 hp58c02.g2 WGS-SbicolorF (JM107 adap... 78 2e-012
gb|CL150227.1|CL150227 104_331_10778370_116_31356_306 Sorgh... 78 2e-012
gb|CL196090.1|CL196090 104_422_10942830_114_32319_031 Sorgh... 78 2e-012
gb|CW257667.1|CW257667 104_723_11227460_116_35159_076 Sorgh... 78 2e-012
gb|CF428899.1|CF428899 PH1_18_E09.g1_A002 Phosphorous-defic... 76 9e-012
gb|CW022976.1|CW022976 104_162_10432168_5_30000 Sorghum met... 72 1e-010
gb|CD225047.1|CD225047 CCC1_37_H01.g1_A007 Callus culture/c... 72 1e-010
gb|CD233122.1|CD233122 SS1_11_D05.g1_A012 Salt-stressed see... 72 1e-010
gb|CD429468.1|CD429468 ETH1_4_D08.g1_A002 Ethylene-treated ... 72 1e-010
gb|CN127041.1|CN127041 RHOH1_20_E05.g1_A002 Acid- and alkal... 72 1e-010
gb|CX607779.1|CX607779 ANR1_30_E05.g1_A002 Anaerobic roots ... 72 1e-010
gb|CX609563.1|CX609563 ANR1_13_A05.g1_A002 Anaerobic roots ... 72 1e-010
gb|CX611921.1|CX611921 ANR1_27_B02.g1_A002 Anaerobic roots ... 72 1e-010
gb|CX612111.1|CX612111 ANR1_28_C05.g1_A002 Anaerobic roots ... 72 1e-010
gb|CX613689.1|CX613689 GABR1_9_D06.g1_A002 GA- or brassinol... 72 1e-010
gb|CL189546.1|CL189546 104_406_10902373_114_32469_049 Sorgh... 70 6e-010
gb|CW222773.1|CW222773 104_658_11202555_116_37181_010 Sorgh... 70 6e-010
gb|CW222774.1|CW222774 104_658_11202555_148_37182_010 Sorgh... 70 6e-010
gb|CW251969.1|CW251969 104_714_11224234_148_35071_033 Sorgh... 70 6e-010
gb|CW382245.1|CW382245 fsbb001f064a16f0 Sorghum methylation... 70 6e-010
gb|CW490207.1|CW490207 fsbb001f275i13f0 Sorghum methylation... 70 6e-010
gb|CF430946.1|CF430946 NIT1_1_H06.g1_A002 Nitrogen-deficien... 68 2e-009
gb|CW170171.1|CW170171 104_580_11155065_116_36509_039 Sorgh... 64 4e-008
gb|CW347426.1|CW347426 fsbb001f007f08f0 Sorghum methylation... 64 4e-008
gb|CW396333.1|CW396333 fsbb001f084l18f0 Sorghum methylation... 62 1e-007
gb|BG947122.1|BG947122 IP1_2_H01.b1_A002 Immature pannicle ... 58 2e-006
gb|CX620981.1|CX620981 GABR1_55_F07.b1_A002 GA- or brassino... 58 2e-006
gb|CL174522.1|CL174522 104_379_10891693_148_31768_061 Sorgh... 54 3e-005
gb|CL156467.1|CL156467 104_343_10782882_116_31476_210 Sorgh... 52 1e-004
gb|CW032934.1|CW032934 104_262_10501671_114_30361 Sorghum m... 52 1e-004
gb|CW065493.1|CW065493 104_312_10523179_115_30130 Sorghum m... 52 1e-004
gb|CW089452.1|CW089452 104_434_10948719_114_32601_050 Sorgh... 52 1e-004
gb|CW231521.1|CW231521 104_680_11211166_116_37344_083 Sorgh... 52 1e-004
gb|CF430355.1|CF430355 PH1_27_F07.g1_A002 Phosphorous-defic... 52 1e-004
gb|CD233024.1|CD233024 SS1_11_D05.b1_A012 Salt-stressed see... 50 5e-004
gb|CF430845.1|CF430845 NIT1_1_H06.b1_A002 Nitrogen-deficien... 50 5e-004
gb|CL159627.1|CL159627 104_349_10804390_114_31381_214 Sorgh... 44 0.033
gb|CW092509.1|CW092509 104_455_10999210_114_33046_045 Sorgh... 44 0.033
gb|CW104615.1|CW104615 104_473_11012525_148_34489_019 Sorgh... 44 0.033
gb|CW137074.1|CW137074 104_523_11119099_116_34870_076 Sorgh... 44 0.033
gb|CW492520.1|CW492520 fsbb001f282n09k0 Sorghum methylation... 44 0.033
gb|BG158569.1|BG158569 RHIZ2_42_B09.g1_A003 Rhizome2 (RHIZ2... 44 0.033
gb|BG241609.1|BG241609 RHIZ2_17_F09.g1_A003 Rhizome2 (RHIZ2... 44 0.033
gb|CF481094.1|CF481094 POL1_69_H11.g1_A002 Pollen Sorghum b... 44 0.033
gb|CX609478.1|CX609478 ANR1_13_A05.b1_A002 Anaerobic roots ... 44 0.033
gb|CX611834.1|CX611834 ANR1_27_B02.b1_A002 Anaerobic roots ... 44 0.033
gb|CX617677.1|CX617677 GABR1_35_D03.b1_A002 GA- or brassino... 44 0.033
gb|CX621145.1|CX621145 GABR1_56_G02.b1_A002 GA- or brassino... 44 0.033
gb|BZ347405.1|BZ347405 hm79b01.b1 WGS-SbicolorF (JM107 adap... 42 0.13
gb|BZ351989.1|BZ351989 hm79b01.g1 WGS-SbicolorF (JM107 adap... 42 0.13
gb|CC059493.1|CC059493 ii24b02.b1 WGS-SbicolorF (DH5a methy... 42 0.13
gb|CL152434.1|CL152434 104_335_10779954_114_31363_354 Sorgh... 42 0.13
gb|CL176679.1|CL176679 104_383_10893286_116_31773_118 Sorgh... 42 0.13
gb|CL188120.1|CL188120 104_404_10901371_116_32448_076 Sorgh... 42 0.13
gb|CW022975.1|CW022975 104_162_10432168_1_30008 Sorghum met... 42 0.13
gb|CW027117.1|CW027117 104_253_10498326_114_30533 Sorghum m... 42 0.13
gb|CW054398.1|CW054398 104_295_10516508_114_30186 Sorghum m... 42 0.13
gb|CW083400.1|CW083400 104_425_10944235_116_32356_070 Sorgh... 42 0.13
gb|CW095892.1|CW095892 104_461_11001588_148_34331_044 Sorgh... 42 0.13
gb|CW126017.1|CW126017 104_506_11112656_148_34727_024 Sorgh... 42 0.13
gb|CW131624.1|CW131624 104_514_11115770_148_34791_005 Sorgh... 42 0.13
gb|CW194814.1|CW194814 104_618_11180304_116_36796_094 Sorgh... 42 0.13
gb|CW222980.1|CW222980 104_658_11202662_148_37183_053 Sorgh... 42 0.13
gb|CW230274.1|CW230274 104_679_11210450_148_37486_015 Sorgh... 42 0.13
gb|CW243111.1|CW243111 104_703_11219743_116_37571_030 Sorgh... 42 0.13
gb|CW243112.1|CW243112 104_703_11219743_148_37572_030 Sorgh... 42 0.13
gb|CW247537.1|CW247537 104_708_11221827_148_35021_006 Sorgh... 42 0.13
gb|CW343202.1|CW343202 104_845_11487291_116_36185_010 Sorgh... 42 0.13
gb|CW384308.1|CW384308 fsbb001f067e13k0 Sorghum methylation... 42 0.13
gb|CW385811.1|CW385811 fsbb001f069g23f0 Sorghum methylation... 42 0.13
gb|CW394408.1|CW394408 fsbb001f081p21k0 Sorghum methylation... 42 0.13
gb|CW400148.1|CW400148 fsbb001f090f06k0 Sorghum methylation... 42 0.13
gb|CW452269.1|CW452269 fsbb001f192l14f0 Sorghum methylation... 42 0.13
gb|CW453785.1|CW453785 fsbb001f197p01f0 Sorghum methylation... 42 0.13
gb|CW455179.1|CW455179 fsbb001f199p03k0 Sorghum methylation... 42 0.13
gb|CW493637.1|CW493637 fsbb001f284i04f0 Sorghum methylation... 42 0.13
gb|BE357952.1|BE357952 DG1_23_C12.b1_A002 Dark Grown 1 (DG1... 42 0.13
gb|BF176859.1|BF176859 EM1_3_D12.b1_A002 Embryo 1 (EM1) Sor... 42 0.13
gb|BF481786.1|BF481786 FM1_20_C12.b1_A003 Floral-Induced Me... 42 0.13
gb|BG463559.1|BG463559 EM1_50_A11.b1_A002 Embryo 1 (EM1) So... 42 0.13
gb|CB924905.1|CB924905 ABA1_28_F10.g1_A012 Abscisic acid-tr... 42 0.13
gb|CD224935.1|CD224935 CCC1_37_H01.b1_A007 Callus culture/c... 42 0.13
gb|CD230318.1|CD230318 SS1_42_E07.g1_A012 Salt-stressed see... 42 0.13
gb|CD429417.1|CD429417 ETH1_4_D08.b1_A002 Ethylene-treated ... 42 0.13
gb|CF430883.1|CF430883 NIT1_1_B10.b1_A002 Nitrogen-deficien... 42 0.13
gb|CF432353.1|CF432353 NIT1_13_D08.b1_A002 Nitrogen-deficie... 42 0.13
gb|CF480619.1|CF480619 POL1_66_G11.g1_A002 Pollen Sorghum b... 42 0.13
gb|CN129805.1|CN129805 RHOH1_37_B07.g1_A002 Acid- and alkal... 42 0.13
gb|CN133529.1|CN133529 OX1_12_F12.g1_A002 Oxidatively-stres... 42 0.13
gb|CN139198.1|CN139198 OX1_16_D06.g1_A002 Oxidatively-stres... 42 0.13
gb|CN148045.1|CN148045 WOUND1_53_H05.g1_A002 Wounded leaves... 42 0.13
gb|CX607694.1|CX607694 ANR1_30_E05.b1_A002 Anaerobic roots ... 42 0.13
gb|CX612021.1|CX612021 ANR1_28_C05.b1_A002 Anaerobic roots ... 42 0.13
gb|CX612155.1|CX612155 ANR1_28_G03.g1_A002 Anaerobic roots ... 42 0.13
gb|CX615178.1|CX615178 GABR1_18_D04.g1_A002 GA- or brassino... 42 0.13
gb|AF474130.1| Sorghum bicolor typical P-type R2R3 Myb prot... 42 0.13
>gb|CW166934.1|CW166934 104_575_11153325_116_36768_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153325, DNA
sequence
Length = 655
Score = 716 bits (361), Expect = 0.0
Identities = 584/658 (88%), Gaps = 24/658 (3%)
Strand = Plus / Minus
Query: 475 atcggcaagcacggcgccgacggcatgtcccgggacttcacgtggatccaggccatcgcc 534
|||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 655 atcggcaagcgcggcgcggacggcatgtcgcgggacttcacgtggatccaggccatcgcc 596
Query: 535 gtgctcttcgacggc------cacgagctctacgtcggcgccaggaagacggccgc---- 584
||||| ||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct: 595 gtgcttttcgacggcggccaccaccagctctacgtcggcgccaggaagaccgccgccggc 536
Query: 585 --gtgggacgacgacgtcgaccgcatggagctcaccctggacggcgagcccgtgcgcctc 642
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 535 gcgtgggacgacgacgtcgaccgcatggagctcaccctggacggcgagcccgtgaacctc 476
Query: 643 ctgccgggaaccgacgccgcgtggacgtccggcgccgtgccggcgctgtccgtcacccgc 702
| |||| |||||||| ||||||| |||| | ||||||||||||||||| ||||||||
Sbjct: 475 ccagagggagccgacgccacgtggacctccgccaccgtgccggcgctgtccatcacccgc 416
Query: 703 accagcgcggccaacggcgtgctcgtctcgctcgacggcaggttcaccatcagggccaac 762
||||| || |||||||||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct: 415 accagggccgccaacggcgtgctcgtcgcgctcgccggcaggttcagcatcagggccaac 356
Query: 763 gccgtgcccatcacagaggaggagtccagggtgcaccggtacggcgtcacggccgacgac 822
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 355 gccgtgcccatcaccgacgaggagtcgagggtgcaccggtacggcgtcacggccgacgac 296
Query: 823 tgcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggc 882
|||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 295 tgcctcgcgcacctcgacctggccttcaagttcgacgcgctcaccggcgacgtgcacggc 236
Query: 883 gtggtcggccagacgtaccgctccgactacgtcaaccggttcgatgtcaaggcctcaatg 942
|||||||| |||||||||||| |||||||||| ||| |||||||||||||||| || |||
Sbjct: 235 gtggtcggacagacgtaccgccccgactacgtgaacgggttcgatgtcaaggcgtccatg 176
Query: 943 cccaccatgggaggggacagcaactacaccacgtccagcctcttcgccgctgactgcgcc 1002
||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct: 175 cccaccatgggaggggagggcaacttcaccacgtccagcctcttcgccgccgactgcgcc 116
Query: 1003 gtggcgcgttacgcgccgtctggcggtagccgtgaccgtgacgac---ggcgttgctatg 1059
|||||||||| |||| |||||||| | ||| | |||||||| ||||| ||||||
Sbjct: 115 gtggcgcgttttgcgc---ctggcggtggtcgtcccggtgacgacgatggcgtcgctatg 59
Query: 1060 gtgt------cagagatcgctggcatcacctgtgccagtggcatgggtggccaaggcg 1111
|||| ||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 58 gtgtcagaggcagagctcgctggcatcacctgtgccagtggcatgagcggccaaggcg 1
>gb|CW400147.1|CW400147 fsbb001f090f06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f090f06, DNA
sequence
Length = 566
Score = 682 bits (344), Expect = 0.0
Identities = 511/566 (90%), Gaps = 13/566 (2%)
Strand = Plus / Minus
Query: 455 tccacatcaacg-cgcacttcatcggcaagcacggcgccgacggcatgtcccgggacttc 513
|||||||||||| | || ||||||||||||| |||||| ||||||||||| |||||||||
Sbjct: 566 tccacatcaacggcccatttcatcggcaagcgcggcgcggacggcatgtcgcgggacttc 507
Query: 514 acgtggatccaggccatcgccgtgctcttcgacggc------cacgagctctacgtcggc 567
||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||
Sbjct: 506 acgtggatccaggccatcgccgtgctctttgacggcggccaccaccagctctacgtcggc 447
Query: 568 gccaggaagacggccgc------gtgggacgacgacgtcgaccgcatggagctcaccctg 621
||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 446 gccaggaagaccgccgccggcgcgtgggatgacgacgtcgaccgcatggagctcaccctg 387
Query: 622 gacggcgagcccgtgcgcctcctgccgggaaccgacgccgcgtggacgtccggcgccgtg 681
||||||||||||||| ||||| |||| |||||||| ||||||| |||| | |||||
Sbjct: 386 gacggcgagcccgtgaacctcccagagggagccgacgccacgtggacctccgccaccgtg 327
Query: 682 ccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcgacggc 741
|||||||||||| ||||||||||||| || |||||||||||||||||| |||||| ||||
Sbjct: 326 ccggcgctgtccatcacccgcaccagggccgccaacggcgtgctcgtcgcgctcgccggc 267
Query: 742 aggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtgcaccgg 801
||||||| ||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 266 aggttcagcatcagggccaacgccgtgcccatcaccgacgaggagtcgagggtgcaccgg 207
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 206 tacggcgtcacggccgacgactgcctcgcgcacctcgacctggccttcaagttcgacgcg 147
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaaccgg 921
||||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||| ||
Sbjct: 146 ctcaccggcgacgtgcacggcgtggtcggacagacgtaccgccccgactacgtgaacggg 87
Query: 922 ttcgatgtcaaggcctcaatgcccaccatgggaggggacagcaactacaccacgtccagc 981
|||||||||||||| || |||||||||||||||||||| |||||| |||||||||||||
Sbjct: 86 ttcgatgtcaaggcgtccatgcccaccatgggaggggagggcaacttcaccacgtccagc 27
Query: 982 ctcttcgccgctgactgcgccgtggc 1007
||||||||||| ||||||||||||||
Sbjct: 26 ctcttcgccgccgactgcgccgtggc 1
>gb|CW270551.1|CW270551 104_742_11402487_116_35332_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402487, DNA
sequence
Length = 708
Score = 630 bits (318), Expect = e-179
Identities = 499/557 (89%), Gaps = 13/557 (2%)
Strand = Plus / Minus
Query: 582 cgcgtgggacgacgacgtcgaccgcatggagctcaccctggacggcgagcccgtgcgcct 641
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 686 cgcgtgggacgacgacgtcgaccgcatggagctcaccttggacggcgagcccgtgaactc 627
Query: 642 cctgccgggaaccgacgccgcgtggacgtccggcgccgtgccggcgctgtccgtcacccg 701
|| | |||| |||||||| ||||||| |||| | ||||||||||||||||| |||||||
Sbjct: 626 ccaga-gggagccgacgccacgtggacctccgccaccgtgccggcgctgtccatcacccg 568
Query: 702 caccagcgcggccaacggcgtgctcgtctcgctcgacggcaggttcaccatcagggccaa 761
|||||| || |||||||||||||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 567 caccagggccgccaacggcgtgctcgtcgcgctcgccggcaggttcagcatcagggccaa 508
Query: 762 cgccgtgcccatcacagaggaggagtccagggtgcaccggtacggcgtcacggccgacga 821
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 507 cgccgtgcccatcaccgacgaggagtcgagggtgcaccggtacggcgtcacggccgacga 448
Query: 822 ctgcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacgg 881
||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 447 ctgcctcgcgcacctcgacctggccttcaagttcgacgcgctcaccggcgacgtgcacgg 388
Query: 882 cgtggtcggccagacgtaccgctccgactacgtcaaccggttcgatgtcaaggcctcaat 941
||||||||| |||||||||||| |||||||||| ||| |||||||||||||||| || ||
Sbjct: 387 cgtggtcggacagacgtaccgccccgactacgtgaacgggttcgatgtcaaggcgtccat 328
Query: 942 gcccaccatgggaggggacagcaactacaccacgtccagcctcttcgccgctgactgcgc 1001
|||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||
Sbjct: 327 gcccaccatgggaggggagggcaacttcaccacgtccagcctcttcgccgccgactgcgc 268
Query: 1002 cgtggcgcgttacgcgccgtctggcggtagccgtgaccgtgacgac---ggcgttgctat 1058
||||||||||| |||| |||||||| | ||| | |||||||| ||||| |||||
Sbjct: 267 cgtggcgcgttttgcgc---ctggcggtggtcgtcccggtgacgacgatggcgtcgctat 211
Query: 1059 ggtgt------cagagatcgctggcatcacctgtgccagtggcatgggtggccaaggcgt 1112
||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 210 ggtgtcagaggcagagctcgctggcatcacctgtgccagtggcatgagcggccaaggcgt 151
Query: 1113 ggtgtgcaagaagtaac 1129
|||||||||||||||||
Sbjct: 150 ggtgtgcaagaagtaac 134
>gb|CW270552.1|CW270552 104_742_11402487_148_35336_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402487, DNA
sequence
Length = 694
Score = 450 bits (227), Expect = e-124
Identities = 288/309 (93%), Gaps = 12/309 (3%)
Strand = Plus / Plus
Query: 340 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 425
Query: 400 ttctacttccacggccgccgggacgccgacttctgcgtgctctccgaccgcgacctccac 459
||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct: 426 ttctacttccacggccggcgagacgccgacttctgcgtggtctccgaccgcgacctccac 485
Query: 460 atcaacgcgcacttcatcggcaagcacggcgccgacggcatgtcccgggacttcacgtgg 519
|||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 486 atcaacgcccacttcatcggcaagcgcggcgcggacggcatgtcgcgggacttcacgtgg 545
Query: 520 atccaggccatcgccgtgctcttcgacgg------ccacgagctctacgtcggcgccagg 573
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 546 atccaggccatcgccgtgctcttcgacggcggccaccaccagctctacgtcggcgccagg 605
Query: 574 aagacggc------cgcgtgggacgacgacgtcgaccgcatggagctcaccctggacggc 627
||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aagaccgccgccggcgcgtgggacgacgacgtcgaccgcatggagctcaccctggacggc 665
Query: 628 gagcccgtg 636
|||||||||
Sbjct: 666 gagcccgtg 674
Score = 202 bits (102), Expect = 6e-050
Identities = 126/134 (94%)
Strand = Plus / Plus
Query: 207 gaagcccaagcccatgaaggtgaagtgccgcccccgtaagctctacccttactgccccgg 266
|||||| |||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct: 149 gaagccgaagcccatgaaggtgaagtgccaccaccgtaagctctacccttactgcaccgc 208
Query: 267 caagccgatggagtgccccgccgagtgttcccagtcatgctacgccgactgcagctcctg 326
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 209 caagcccatggagtgccccgccgcctgttcccagtcatgctacgccgactgcagctcctg 268
Query: 327 caaacccgtctgcg 340
||||||||||||||
Sbjct: 269 caaacccgtctgcg 282
Score = 95.6 bits (48), Expect = 1e-017
Identities = 103/121 (85%), Gaps = 9/121 (7%)
Strand = Plus / Plus
Query: 75 gcaaatggccaggctgggagcactgattccgc---tggccat------cgtcctgctcgc 125
||||||||||||||||||||||||| |||||| ||||||| |||||| ||
Sbjct: 29 gcaaatggccaggctgggagcactgcttccgctgctggccatggcggccgtcctcctgct 88
Query: 126 cgccgtcgcggccactgccgcgccttcagacaggccacccaaggcgcaggggcccaagcc 185
||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 89 cgccgtcgcggccaccaccgcgccttccgacaggccacccaaggcgcagggtcccaagcc 148
Query: 186 g 186
|
Sbjct: 149 g 149
>gb|CW166935.1|CW166935 104_575_11153325_148_36767_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153325, DNA
sequence
Length = 658
Score = 202 bits (102), Expect = 6e-050
Identities = 126/134 (94%)
Strand = Plus / Plus
Query: 207 gaagcccaagcccatgaaggtgaagtgccgcccccgtaagctctacccttactgccccgg 266
|||||| |||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct: 371 gaagccgaagcccatgaaggtgaagtgccaccaccgtaagctctacccttactgcaccgc 430
Query: 267 caagccgatggagtgccccgccgagtgttcccagtcatgctacgccgactgcagctcctg 326
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 431 caagcccatggagtgccccgccgcctgttcccagtcatgctacgccgactgcagctcctg 490
Query: 327 caaacccgtctgcg 340
||||||||||||||
Sbjct: 491 caaacccgtctgcg 504
Score = 141 bits (71), Expect = 2e-031
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 340 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 647
Query: 400 ttctacttcca 410
|||||||||||
Sbjct: 648 ttctacttcca 658
Score = 95.6 bits (48), Expect = 1e-017
Identities = 103/121 (85%), Gaps = 9/121 (7%)
Strand = Plus / Plus
Query: 75 gcaaatggccaggctgggagcactgattccgc---tggccat------cgtcctgctcgc 125
||||||||||||||||||||||||| |||||| ||||||| |||||| ||
Sbjct: 251 gcaaatggccaggctgggagcactgcttccgctgctggccatggcggccgtcctcctgct 310
Query: 126 cgccgtcgcggccactgccgcgccttcagacaggccacccaaggcgcaggggcccaagcc 185
||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 311 cgccgtcgcggccaccaccgcgccttccgacaggccacccaaggcgcagggtcccaagcc 370
Query: 186 g 186
|
Sbjct: 371 g 371
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 taccatctcatctcagtgaatcatcacac 32
|||||||||||||||||| ||| ||||||
Sbjct: 163 taccatctcatctcagtgcatcttcacac 191
>gb|CW166936.1|CW166936 104_575_11153326_148_36766_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153326, DNA
sequence
Length = 656
Score = 202 bits (102), Expect = 6e-050
Identities = 126/134 (94%)
Strand = Plus / Plus
Query: 207 gaagcccaagcccatgaaggtgaagtgccgcccccgtaagctctacccttactgccccgg 266
|||||| |||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct: 371 gaagccgaagcccatgaaggtgaagtgccaccaccgtaagctctacccttactgcaccgc 430
Query: 267 caagccgatggagtgccccgccgagtgttcccagtcatgctacgccgactgcagctcctg 326
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 431 caagcccatggagtgccccgccgcctgttcccagtcatgctacgccgactgcagctcctg 490
Query: 327 caaacccgtctgcg 340
||||||||||||||
Sbjct: 491 caaacccgtctgcg 504
Score = 137 bits (69), Expect = 3e-030
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 340 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 647
Query: 400 ttctacttc 408
|||||||||
Sbjct: 648 ttctacttc 656
Score = 95.6 bits (48), Expect = 1e-017
Identities = 103/121 (85%), Gaps = 9/121 (7%)
Strand = Plus / Plus
Query: 75 gcaaatggccaggctgggagcactgattccgc---tggccat------cgtcctgctcgc 125
||||||||||||||||||||||||| |||||| ||||||| |||||| ||
Sbjct: 251 gcaaatggccaggctgggagcactgcttccgctgctggccatggcggccgtcctcctgct 310
Query: 126 cgccgtcgcggccactgccgcgccttcagacaggccacccaaggcgcaggggcccaagcc 185
||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 311 cgccgtcgcggccaccaccgcgccttccgacaggccacccaaggcgcagggtcccaagcc 370
Query: 186 g 186
|
Sbjct: 371 g 371
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 taccatctcatctcagtgaatcatcacac 32
|||||||||||||||||| ||| ||||||
Sbjct: 163 taccatctcatctcagtgcatcttcacac 191
>gb|CW391673.1|CW391673 fsbb001f077o23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077o23, DNA
sequence
Length = 362
Score = 135 bits (68), Expect = 1e-029
Identities = 162/191 (84%), Gaps = 13/191 (6%)
Strand = Plus / Minus
Query: 949 atgggaggggacagcaactacaccacgtccagcct-cttcgccgctgactgcgccgtggc 1007
||||||||||| |||||| | ||||||||||||| ||||||||| ||||||||||||||
Sbjct: 362 atgggaggggagggcaacttccccacgtccagccttcttcgccgccgactgcgccgtggc 303
Query: 1008 gcgttacgcgccgtctggcggtagccgtgaccgtgacgacg---gcgttgctatggtgtc 1064
||||| ||||| ||||||| | ||| | ||||||||| |||| |||||||||||
Sbjct: 302 gcgttttgcgcc---tggcggtggtcgtcccggtgacgacgatggcgtcgctatggtgtc 246
Query: 1065 agaga------tcgctggcatcacctgtgccagtggcatgggtggccaaggcgtggtgtg 1118
|||| ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 245 agaggcagagctcgctggcatcacctgtgccagtggcatgagcggccaaggcgtggtgtg 186
Query: 1119 caagaagtaac 1129
|||||||||||
Sbjct: 185 caagaagtaac 175
>gb|CW072243.1|CW072243 104_325_10592151_116_30541 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592151, DNA
sequence
Length = 636
Score = 119 bits (60), Expect = 7e-025
Identities = 108/124 (87%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 13 tgcggtgacccgcgcttcaccggcggcgacggcaacaacttctacttccacggcaagaag 72
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
|||| ||||||||| | ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 73 gacggggacttctgcatcctctccgacgccaacctccacatcaacgcgcacttcatcggc 132
Query: 481 aagc 484
||||
Sbjct: 133 aagc 136
Score = 69.9 bits (35), Expect = 6e-010
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 817 gacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtg 876
|||||| ||||||||||| | ||||| | ||||||||| || ||||||| |||||||
Sbjct: 481 gacgacagcctcgcgcacttcgacctcgggttcaagttcttcgacctcaccgacgacgtg 540
Query: 877 cacggcgtggtcggccagacgtaccgctccgactacgtcaacc 919
|| ||||| |||||||||| |||||| |||||||| ||||||
Sbjct: 541 catggcgtcctcggccagacctaccgcgccgactacatcaacc 583
>gb|CW241279.1|CW241279 104_700_11218680_148_37541_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218680, DNA
sequence
Length = 497
Score = 119 bits (60), Expect = 7e-025
Identities = 108/124 (87%)
Strand = Plus / Minus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 164 tgcggtgacccgcgcttcaccggcggcgacggcaacaacttctacttccacggcaagaag 105
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
|||| ||||||||| | ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 104 gacggggacttctgcatcctctccgacgccaacctccacatcaacgcgcacttcatcggc 45
Query: 481 aagc 484
||||
Sbjct: 44 aagc 41
>gb|CW251968.1|CW251968 104_714_11224234_116_35067_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224234, DNA
sequence
Length = 747
Score = 119 bits (60), Expect = 7e-025
Identities = 108/124 (87%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 149 tgcggtgacccgcgcttcaccggcggcgacggcaacaacttctacttccacggcaagaag 208
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
|||| ||||||||| | ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 209 gacggggacttctgcatcctctccgacgccaacctccacatcaacgcgcacttcatcggc 268
Query: 481 aagc 484
||||
Sbjct: 269 aagc 272
>gb|CW490208.1|CW490208 fsbb001f275i13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f275i13, DNA
sequence
Length = 708
Score = 119 bits (60), Expect = 7e-025
Identities = 108/124 (87%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 122 tgcggtgacccgcgcttcaccggcggcgacggcaacaacttctacttccacggcaagaag 181
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
|||| ||||||||| | ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 182 gacggggacttctgcatcctctccgacgccaacctccacatcaacgcgcacttcatcggc 241
Query: 481 aagc 484
||||
Sbjct: 242 aagc 245
Score = 69.9 bits (35), Expect = 6e-010
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 817 gacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtg 876
|||||| ||||||||||| | ||||| | ||||||||| || ||||||| |||||||
Sbjct: 590 gacgacagcctcgcgcacttcgacctcgggttcaagttcttcgacctcaccgacgacgtg 649
Query: 877 cacggcgtggtcggccagacgtaccgctccgactacgtcaacc 919
|| ||||| |||||||||| |||||| |||||||| ||||||
Sbjct: 650 catggcgtcctcggccagacctaccgcgccgactacatcaacc 692
>gb|CF428909.1|CF428909 PH1_18_E02.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_18_E02_A002 5', mRNA sequence
Length = 643
Score = 119 bits (60), Expect = 7e-025
Identities = 108/124 (87%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 372 tgcggtgacccgcgcttcaccggcggcgacggcaacaacttctacttccacggcaagaag 431
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
|||| ||||||||| | ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 432 gacggggacttctgcatcctctccgacgccaacctccacatcaacgcgcacttcatcggc 491
Query: 481 aagc 484
||||
Sbjct: 492 aagc 495
>gb|CW390164.1|CW390164 fsbb001f075l10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f075l10, DNA
sequence
Length = 607
Score = 117 bits (59), Expect = 3e-024
Identities = 104/119 (87%)
Strand = Plus / Plus
Query: 366 cgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgc 425
||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||
Sbjct: 135 cgacccgcgcttcgtcggcggcgacggcaacaagttcctcttccacggccgcagggacgc 194
Query: 426 cgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggcaagc 484
|||||||||| || | || ||| | |||| ||||||||||||||||||||||||||||
Sbjct: 195 cgacttctgcctggtgtcggacgccaacctgcacatcaacgcgcacttcatcggcaagc 253
>gb|CW463792.1|CW463792 fsbb001f212k15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f212k15, DNA
sequence
Length = 422
Score = 117 bits (59), Expect = 3e-024
Identities = 104/119 (87%)
Strand = Plus / Plus
Query: 366 cgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgc 425
||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||
Sbjct: 108 cgacccgcgcttcgtcggcggcgacggcaacaagttcctcttccacggccgcagggacgc 167
Query: 426 cgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggcaagc 484
|||||||||| || | || ||| | |||| ||||||||||||||||||||||||||||
Sbjct: 168 cgacttctgcctggtgtcggacgccaacctgcacatcaacgcgcacttcatcggcaagc 226
>gb|CF426915.1|CF426915 PH1_2_A02.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_2_A02_A002 5', mRNA sequence
Length = 570
Score = 117 bits (59), Expect = 3e-024
Identities = 104/119 (87%)
Strand = Plus / Plus
Query: 366 cgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgc 425
||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||
Sbjct: 384 cgacccgcgcttcgtcggcggcgacggcaacaagttcctcttccacggccgcagggacgc 443
Query: 426 cgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggcaagc 484
|||||||||| || | || ||| | |||| ||||||||||||||||||||||||||||
Sbjct: 444 cgacttctgcctggtgtcggacgccaacctgcacatcaacgcgcacttcatcggcaagc 502
>gb|CW315799.1|CW315799 104_807_11472554_116_35843_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472554, DNA
sequence
Length = 565
Score = 107 bits (54), Expect = 3e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct: 179 tgcggcgaccctcgcttcaccggcggcgacggcaacaccttctacttccacggcaaaaag 120
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | || ||||| |||||||||||||||||||||||||||||||
Sbjct: 119 gaccaggacttctgcatcgtcaccgacgccgacctccacatcaacgcgcacttcatcggc 60
Query: 481 aa 482
||
Sbjct: 59 aa 58
>gb|CD235577.1|CD235577 SS1_36_G11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_36_G11_A012 5', mRNA sequence
Length = 675
Score = 107 bits (54), Expect = 3e-021
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| | |
Sbjct: 460 tgcggcgaccctcgcttcaccggcggcgacggcaacaccttctacttccacggcaacaag 519
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| || |||||| | | |||||| |||||||||||||||||||||||||||||||
Sbjct: 520 gaccaggatttctgcatcgtgtccgacgccgacctccacatcaacgcgcacttcatcggc 579
Query: 481 aa 482
||
Sbjct: 580 aa 581
>gb|CF427457.1|CF427457 PH1_1_D07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_1_D07_A002 5', mRNA sequence
Length = 643
Score = 107 bits (54), Expect = 3e-021
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| | |
Sbjct: 450 tgcggcgaccctcgcttcaccggcggcgacggcaacaccttctacttccacggcaacaag 509
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| || |||||| | | |||||| |||||||||||||||||||||||||||||||
Sbjct: 510 gaccaggatttctgcatcgtgtccgacgccgacctccacatcaacgcgcacttcatcggc 569
Query: 481 aa 482
||
Sbjct: 570 aa 571
>gb|CF433982.1|CF433982 NIT1_31_D04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_31_D04_A002 5', mRNA sequence
Length = 652
Score = 107 bits (54), Expect = 3e-021
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| | |
Sbjct: 435 tgcggcgaccctcgcttcaccggcggcgacggcaacaccttctacttccacggcaacaag 494
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| || |||||| | | |||||| |||||||||||||||||||||||||||||||
Sbjct: 495 gaccaggatttctgcatcgtgtccgacgccgacctccacatcaacgcgcacttcatcggc 554
Query: 481 aa 482
||
Sbjct: 555 aa 556
>gb|CN130629.1|CN130629 RHOH1_42_F06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_42_F06_A002 5', mRNA sequence
Length = 856
Score = 107 bits (54), Expect = 3e-021
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| | |
Sbjct: 446 tgcggcgaccctcgcttcaccggcggcgacggcaacaccttctacttccacggcaacaag 505
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| || |||||| | | |||||| |||||||||||||||||||||||||||||||
Sbjct: 506 gaccaggatttctgcatcgtgtccgacgccgacctccacatcaacgcgcacttcatcggc 565
Query: 481 aa 482
||
Sbjct: 566 aa 567
>gb|CN138740.1|CN138740 OX1_13_D08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_13_D08_A002 5', mRNA sequence
Length = 764
Score = 107 bits (54), Expect = 3e-021
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| | |
Sbjct: 446 tgcggcgaccctcgcttcaccggcggcgacggcaacaccttctacttccacggcaacaag 505
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| || |||||| | | |||||| |||||||||||||||||||||||||||||||
Sbjct: 506 gaccaggatttctgcatcgtgtccgacgccgacctccacatcaacgcgcacttcatcggc 565
Query: 481 aa 482
||
Sbjct: 566 aa 567
>gb|CX606349.1|CX606349 ANR1_2_C01.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_2_C01_A002 5', mRNA sequence
Length = 770
Score = 107 bits (54), Expect = 3e-021
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| | |
Sbjct: 446 tgcggcgaccctcgcttcaccggcggcgacggcaacaccttctacttccacggcaacaag 505
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| || |||||| | | |||||| |||||||||||||||||||||||||||||||
Sbjct: 506 gaccaggatttctgcatcgtgtccgacgccgacctccacatcaacgcgcacttcatcggc 565
Query: 481 aa 482
||
Sbjct: 566 aa 567
>gb|CX609133.1|CX609133 ANR1_10_G12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_G12_A002 5', mRNA sequence
Length = 615
Score = 107 bits (54), Expect = 3e-021
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| | |
Sbjct: 444 tgcggcgaccctcgcttcaccggcggcgacggcaacaccttctacttccacggcaacaag 503
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| || |||||| | | |||||| |||||||||||||||||||||||||||||||
Sbjct: 504 gaccaggatttctgcatcgtgtccgacgccgacctccacatcaacgcgcacttcatcggc 563
Query: 481 aa 482
||
Sbjct: 564 aa 565
>gb|CX615009.1|CX615009 GABR1_17_D03.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_17_D03_A002 5', mRNA sequence
Length = 829
Score = 107 bits (54), Expect = 3e-021
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| | |
Sbjct: 444 tgcggcgaccctcgcttcaccggcggcgacggcaacaccttctacttccacggcaacaag 503
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| || |||||| | | |||||| |||||||||||||||||||||||||||||||
Sbjct: 504 gaccaggatttctgcatcgtgtccgacgccgacctccacatcaacgcgcacttcatcggc 563
Query: 481 aa 482
||
Sbjct: 564 aa 565
>gb|CX618625.1|CX618625 GABR1_40_E09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_40_E09_A002 5', mRNA sequence
Length = 700
Score = 107 bits (54), Expect = 3e-021
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| | |
Sbjct: 443 tgcggcgaccctcgcttcaccggcggcgacggcaacaccttctacttccacggcaacaag 502
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| || |||||| | | |||||| |||||||||||||||||||||||||||||||
Sbjct: 503 gaccaggatttctgcatcgtgtccgacgccgacctccacatcaacgcgcacttcatcggc 562
Query: 481 aa 482
||
Sbjct: 563 aa 564
>gb|CL174521.1|CL174521 104_379_10891693_116_31769_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891693, DNA
sequence
Length = 744
Score = 105 bits (53), Expect = 1e-020
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 593 gcctcgcgcacctcaacgtggcgttcaagttctacgcgctcaccgccgacgtgcacggcg 534
Query: 884 tggtcggccagacgtaccgctccgactacgtca 916
|| | ||||||||||||||| | ||||||||||
Sbjct: 533 tgctgggccagacgtaccgcccggactacgtca 501
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 756 ggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacggcgt 809
||||||||||||||| | || |||||||| || ||||||||| ||||||||||
Sbjct: 667 ggccaacgccgtgccggtgaccgaggaggactcgagggtgcacgggtacggcgt 614
>gb|CW040234.1|CW040234 104_273_10505995_114_30263 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505995, DNA
sequence
Length = 576
Score = 105 bits (53), Expect = 1e-020
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 429 gcctcgcgcacctcaacgtggcgttcaagttctacgcgctcaccgccgacgtgcacggcg 370
Query: 884 tggtcggccagacgtaccgctccgactacgtca 916
|| | ||||||||||||||| | ||||||||||
Sbjct: 369 tgctgggccagacgtaccgcccggactacgtca 337
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 756 ggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacggcgt 809
||||||||||||||| | || |||||||| || ||||||||| ||||||||||
Sbjct: 503 ggccaacgccgtgccggtgaccgaggaggactcgagggtgcacgggtacggcgt 450
>gb|CN128152.1|CN128152 RHOH1_27_H02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_H02_A002 3', mRNA sequence
Length = 695
Score = 105 bits (53), Expect = 1e-020
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 35 gcctcgcgcacctcaacgtggcgttcaagttctacgcgctcaccgccgacgtgcacggcg 94
Query: 884 tggtcggccagacgtaccgctccgactacgtca 916
|| | ||||||||||||||| | ||||||||||
Sbjct: 95 tgctgggccagacgtaccgcccggactacgtca 127
>gb|CX610812.1|CX610812 ANR1_21_A08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_21_A08_A002 3', mRNA sequence
Length = 806
Score = 105 bits (53), Expect = 1e-020
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 124 gcctcgcgcacctcaacgtggcgttcaagttctacgcgctcaccgccgacgtgcacggcg 183
Query: 884 tggtcggccagacgtaccgctccgactacgtca 916
|| | ||||||||||||||| | ||||||||||
Sbjct: 184 tgctgggccagacgtaccgcccggactacgtca 216
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 756 ggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacggcgt 809
||||||||||||||| | || |||||||| || ||||||||| ||||||||||
Sbjct: 50 ggccaacgccgtgccggtgaccgaggaggactcgagggtgcacgggtacggcgt 103
>gb|CW245585.1|CW245585 104_706_11221046_116_35081_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221046, DNA
sequence
Length = 690
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 390 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 449
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 450 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 509
Query: 481 aagc 484
||||
Sbjct: 510 aagc 513
>gb|CW245586.1|CW245586 104_706_11221046_116_37600_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221046, DNA
sequence
Length = 680
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 390 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 449
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 450 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 509
Query: 481 aagc 484
||||
Sbjct: 510 aagc 513
>gb|CW265262.1|CW265262 104_734_11231767_116_35257_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231767, DNA
sequence
Length = 662
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 610 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 551
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 550 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 491
Query: 481 aagc 484
||||
Sbjct: 490 aagc 487
Score = 85.7 bits (43), Expect = 1e-014
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 816 cgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgt 875
||||||| ||||||||||||| ||||| | |||||||||| || ||||||| ||||||
Sbjct: 149 cgacgacagcctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgt 90
Query: 876 gcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||||||||| | |||||||| |||||| | ||||||||||||
Sbjct: 89 ccacggcgtgctgggccagacctaccgcccggactacgtcaac 47
>gb|BG487479.1|BG487479 EM1_65_E08.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 485
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 334 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 393
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 394 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 453
Query: 481 aagc 484
||||
Sbjct: 454 aagc 457
>gb|BG487560.1|BG487560 EM1_67_E09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 594
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 334 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 393
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 394 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 453
Query: 481 aagc 484
||||
Sbjct: 454 aagc 457
>gb|BG739542.1|BG739542 EM1_82_B10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 542
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 334 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 393
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 394 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 453
Query: 481 aagc 484
||||
Sbjct: 454 aagc 457
>gb|CD224076.1|CD224076 CCC1_31_H11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_31_H11_A007 5', mRNA sequence
Length = 697
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 346 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 405
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 406 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 465
Query: 481 aagc 484
||||
Sbjct: 466 aagc 469
>gb|CD225005.1|CD225005 CCC1_37_F06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_F06_A007 5', mRNA sequence
Length = 553
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 346 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 405
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 406 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 465
Query: 481 aagc 484
||||
Sbjct: 466 aagc 469
>gb|CD225472.1|CD225472 CCC1_3_D06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_3_D06_A007 5', mRNA sequence
Length = 667
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 351 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 410
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 411 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 470
Query: 481 aagc 484
||||
Sbjct: 471 aagc 474
>gb|CD226863.1|CD226863 CCC1_48_H08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_48_H08_A007 5', mRNA sequence
Length = 654
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 336 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 395
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 396 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 455
Query: 481 aagc 484
||||
Sbjct: 456 aagc 459
>gb|CD227802.1|CD227802 CCC1_53_C05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_C05_A007 5', mRNA sequence
Length = 604
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 342 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 401
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 402 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 461
Query: 481 aagc 484
||||
Sbjct: 462 aagc 465
>gb|CD227894.1|CD227894 CCC1_56_D12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_D12_A007 5', mRNA sequence
Length = 629
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 342 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 401
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 402 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 461
Query: 481 aagc 484
||||
Sbjct: 462 aagc 465
>gb|CD227920.1|CD227920 CCC1_56_D09.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_D09_A007 5', mRNA sequence
Length = 664
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 342 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 401
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 402 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 461
Query: 481 aagc 484
||||
Sbjct: 462 aagc 465
>gb|CD228642.1|CD228642 CCC1_8_A01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_A01_A007 5', mRNA sequence
Length = 490
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 354 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 413
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 414 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 473
Query: 481 aagc 484
||||
Sbjct: 474 aagc 477
>gb|CD229676.1|CD229676 CCC1_18_F05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_18_F05_A007 5', mRNA sequence
Length = 549
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 352 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 411
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 412 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 471
Query: 481 aagc 484
||||
Sbjct: 472 aagc 475
>gb|CD229899.1|CD229899 CCC1_20_C06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_20_C06_A007 5', mRNA sequence
Length = 659
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 355 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 414
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 415 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 474
Query: 481 aagc 484
||||
Sbjct: 475 aagc 478
>gb|CD430045.1|CD430045 ETH1_13_E09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_13_E09_A002 5', mRNA sequence
Length = 642
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 341 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 400
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 401 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 460
Query: 481 aagc 484
||||
Sbjct: 461 aagc 464
>gb|CF427473.1|CF427473 PH1_1_H09.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_1_H09_A002 5', mRNA sequence
Length = 713
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 346 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 405
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 406 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 465
Query: 481 aagc 484
||||
Sbjct: 466 aagc 469
>gb|CF432714.1|CF432714 NIT1_18_G04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_18_G04_A002 5', mRNA sequence
Length = 636
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 285 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 344
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 345 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 404
Query: 481 aagc 484
||||
Sbjct: 405 aagc 408
>gb|CN127915.1|CN127915 RHOH1_25_H02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_H02_A002 5', mRNA sequence
Length = 640
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 206 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 265
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 266 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 325
Query: 481 aagc 484
||||
Sbjct: 326 aagc 329
>gb|CX607132.1|CX607132 ANR1_6_H04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_H04_A002 5', mRNA sequence
Length = 753
Score = 103 bits (52), Expect = 4e-020
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||| |||||||||| |||||||||||||||| | |
Sbjct: 338 tgcggcgacccacgcttcacaggcgccgacggcaacaacttctacttccacggcaacaag 397
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 398 gacaaggacttctgcatcgtctccgacgccgacctccacatcaacgcgcacttcatcggc 457
Query: 481 aagc 484
||||
Sbjct: 458 aagc 461
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 423,547
Number of Sequences: 832831
Number of extensions: 423547
Number of successful extensions: 131407
Number of sequences better than 0.5: 178
Number of HSP's better than 0.5 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130688
Number of HSP's gapped (non-prelim): 651
length of query: 1318
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1298
effective length of database: 474,703,049
effective search space: 616164557602
effective search space used: 616164557602
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)