BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8616263.2.1
(509 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF430958.1|CF430958 NIT1_4_D02.b1_A002 Nitrogen-deficien... 387 e-106
gb|CF433776.1|CF433776 NIT1_30_H07.b1_A002 Nitrogen-deficie... 387 e-106
gb|CF488930.1|CF488930 POL1_53_C11.b1_A002 Pollen Sorghum b... 387 e-106
gb|CN130229.1|CN130229 RHOH1_40_C10.b1_A002 Acid- and alkal... 387 e-106
gb|CX609311.1|CX609311 ANR1_12_A01.b1_A002 Anaerobic roots ... 387 e-106
gb|CX610048.1|CX610048 ANR1_16_G06.b1_A002 Anaerobic roots ... 387 e-106
gb|CF429359.1|CF429359 PH1_21_G06.b1_A002 Phosphorous-defic... 373 e-101
gb|CF433802.1|CF433802 NIT1_30_E10.b1_A002 Nitrogen-deficie... 373 e-101
gb|BF586409.1|BF586409 FM1_28_D10.g1_A003 Floral-Induced Me... 357 6e-097
gb|CF431027.1|CF431027 NIT1_4_F02.b1_A002 Nitrogen-deficien... 331 4e-089
gb|CL165339.1|CL165339 104_360_10808538_114_31818_138 Sorgh... 214 6e-054
gb|CL165340.1|CL165340 104_360_10808538_116_31819_138 Sorgh... 214 6e-054
gb|CW221998.1|CW221998 104_657_11202146_148_37449_009 Sorgh... 125 4e-027
gb|CW388622.1|CW388622 fsbb001f073h10f0 Sorghum methylation... 125 4e-027
gb|CW388623.1|CW388623 fsbb001f073h10k0 Sorghum methylation... 125 4e-027
gb|CW410053.1|CW410053 fsbb001f104k04k0 Sorghum methylation... 125 4e-027
gb|BE360607.1|BE360607 DG1_64_C02.g1_A002 Dark Grown 1 (DG1... 107 1e-021
gb|CW489913.1|CW489913 fsbb001f275b19f0 Sorghum methylation... 88 9e-016
gb|CD461728.1|CD461728 SA1_35_C09.b1_A002 Salicylic acid-tr... 88 9e-016
gb|CF427713.1|CF427713 PH1_10_E06.b1_A002 Phosphorous-defic... 88 9e-016
gb|CW111262.1|CW111262 104_484_11104210_148_34528_039 Sorgh... 76 3e-012
gb|CW272516.1|CW272516 104_744_11403454_116_36228_083 Sorgh... 68 9e-010
gb|CW274119.1|CW274119 104_746_11404259_116_35364_034 Sorgh... 62 5e-008
gb|CD212007.1|CD212007 HS1_68_H02.b1_A012 Heat-shocked seed... 52 5e-005
gb|CW135608.1|CW135608 104_520_11117939_148_34834_044 Sorgh... 50 2e-004
gb|CL178579.1|CL178579 104_386_10894676_148_31911_356 Sorgh... 48 8e-004
gb|CW184226.1|CW184226 104_600_11165041_116_36681_007 Sorgh... 48 8e-004
gb|CW222901.1|CW222901 104_658_11202621_116_37181_087 Sorgh... 48 8e-004
gb|CW222902.1|CW222902 104_658_11202621_148_37182_087 Sorgh... 48 8e-004
gb|CW321938.1|CW321938 104_815_11475822_116_35944_023 Sorgh... 48 8e-004
gb|CB927210.1|CB927210 ABA1_14_D11.b1_A012 Abscisic acid-tr... 48 8e-004
gb|CF071060.1|CF071060 FE1_15_G11.b1_A002 Iron-deficient se... 48 8e-004
gb|CL191905.1|CL191905 104_414_10939873_114_32245_009 Sorgh... 40 0.19
gb|BG948193.1|BG948193 IP1_10_E04.g1_A002 Immature pannicle... 40 0.19
gb|CX619752.1|CX619752 GABR1_47_C10.g1_A002 GA- or brassino... 40 0.19
>gb|CF430958.1|CF430958 NIT1_4_D02.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_D02_A002 3', mRNA sequence
Length = 524
Score = 387 bits (195), Expect = e-106
Identities = 237/251 (94%)
Strand = Plus / Minus
Query: 259 gagtctaatcaacatttgggtaagtctgacggcggcgggagcagcttctggtgcgggagg 318
||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 274 gagtctaatcagcatttgggaagatcggacggcggcgggagcagcttctggtgcgggagg 215
Query: 319 ctgccgtcgagcaccaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatgg 378
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 214 ctgccgtcaagcaccaaccatgccatcctgaggccccatgttgtgtgcacctccaaatgg 155
Query: 379 caatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatccgccg 438
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 154 caatgcatgaaccataccccggggttgtcggcaaggaagcgtatggccacccagccgccg 95
Query: 439 gccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttggacgggtcg 498
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 94 gccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttgggcgggtcg 35
Query: 499 ttgacggggtc 509
|| || |||||
Sbjct: 34 ttcaccgggtc 24
Score = 79.8 bits (40), Expect = 2e-013
Identities = 70/80 (87%), Gaps = 5/80 (6%)
Strand = Plus / Minus
Query: 99 aaaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattg 158
||||||||||||||||||||||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 442 aaaaagtccaggtcagctaggaacgga-----ctagtttaaatggaagctgaaagaattg 388
Query: 159 caattggcaatgaagaaagt 178
|||||||||| |||||||||
Sbjct: 387 caattggcaacgaagaaagt 368
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 19 gcaagtcacgccattctttatt 40
||||||||||||||||||||||
Sbjct: 521 gcaagtcacgccattctttatt 500
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 336 gtctaattcacaattcccttt 316
>gb|CF433776.1|CF433776 NIT1_30_H07.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_30_H07_A002 3', mRNA sequence
Length = 641
Score = 387 bits (195), Expect = e-106
Identities = 237/251 (94%)
Strand = Plus / Minus
Query: 259 gagtctaatcaacatttgggtaagtctgacggcggcgggagcagcttctggtgcgggagg 318
||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 394 gagtctaatcagcatttgggaagatcggacggcggcgggagcagcttctggtgcgggagg 335
Query: 319 ctgccgtcgagcaccaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatgg 378
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 334 ctgccgtcaagcaccaaccatgccatcctgaggccccatgttgtgtgcacctccaaatgg 275
Query: 379 caatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatccgccg 438
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 274 caatgcatgaaccataccccggggttgtcggcaaggaagcgtatggccacccagccgccg 215
Query: 439 gccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttggacgggtcg 498
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 214 gccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttgggcgggtcg 155
Query: 499 ttgacggggtc 509
|| || |||||
Sbjct: 154 ttcaccgggtc 144
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%), Gaps = 5/80 (6%)
Strand = Plus / Minus
Query: 99 aaaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattg 158
||||||||||||||||||||||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 562 aaaaagtccaggtcagctaggaacgga-----ctagtttaaatggaagctgaaagaattg 508
Query: 159 caattggcaatgaagaaagt 178
||||||||||||||||||||
Sbjct: 507 caattggcaatgaagaaagt 488
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 19 gcaagtcacgccattctttatt 40
||||||||||||||||||||||
Sbjct: 641 gcaagtcacgccattctttatt 620
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 456 gtctaattcacaattcccttt 436
>gb|CF488930.1|CF488930 POL1_53_C11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_53_C11_A002 3', mRNA sequence
Length = 609
Score = 387 bits (195), Expect = e-106
Identities = 237/251 (94%)
Strand = Plus / Minus
Query: 259 gagtctaatcaacatttgggtaagtctgacggcggcgggagcagcttctggtgcgggagg 318
||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 391 gagtctaatcagcatttgggaagatcggacggcggcgggagcagcttctggtgcgggagg 332
Query: 319 ctgccgtcgagcaccaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatgg 378
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 331 ctgccgtcaagcaccaaccatgccatcctgaggccccatgttgtgtgcacctccaaatgg 272
Query: 379 caatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatccgccg 438
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 271 caatgcatgaaccataccccggggttgtcggcaaggaagcgtatggccacccagccgccg 212
Query: 439 gccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttggacgggtcg 498
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 211 gccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttgggcgggtcg 152
Query: 499 ttgacggggtc 509
|| || |||||
Sbjct: 151 ttcaccgggtc 141
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%), Gaps = 5/80 (6%)
Strand = Plus / Minus
Query: 99 aaaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattg 158
||||||||||||||||||||||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 559 aaaaagtccaggtcagctaggaacgga-----ctagtttaaatggaagctgaaagaattg 505
Query: 159 caattggcaatgaagaaagt 178
||||||||||||||||||||
Sbjct: 504 caattggcaatgaagaaagt 485
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 453 gtctaattcacaattcccttt 433
>gb|CN130229.1|CN130229 RHOH1_40_C10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_C10_A002 3', mRNA sequence
Length = 716
Score = 387 bits (195), Expect = e-106
Identities = 237/251 (94%)
Strand = Plus / Minus
Query: 259 gagtctaatcaacatttgggtaagtctgacggcggcgggagcagcttctggtgcgggagg 318
||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 470 gagtctaatcagcatttgggaagatcggacggcggcgggagcagcttctggtgcgggagg 411
Query: 319 ctgccgtcgagcaccaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatgg 378
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 410 ctgccgtcaagcaccaaccatgccatcctgaggccccatgttgtgtgcacctccaaatgg 351
Query: 379 caatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatccgccg 438
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 350 caatgcatgaaccataccccggggttgtcggcaaggaagcgtatggccacccagccgccg 291
Query: 439 gccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttggacgggtcg 498
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 290 gccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttgggcgggtcg 231
Query: 499 ttgacggggtc 509
|| || |||||
Sbjct: 230 ttcaccgggtc 220
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%), Gaps = 5/80 (6%)
Strand = Plus / Minus
Query: 99 aaaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattg 158
||||||||||||||||||||||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 638 aaaaagtccaggtcagctaggaacgga-----ctagtttaaatggaagctgaaagaattg 584
Query: 159 caattggcaatgaagaaagt 178
||||||||||||||||||||
Sbjct: 583 caattggcaatgaagaaagt 564
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 532 gtctaattcacaattcccttt 512
>gb|CX609311.1|CX609311 ANR1_12_A01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_12_A01_A002 3', mRNA sequence
Length = 538
Score = 387 bits (195), Expect = e-106
Identities = 237/251 (94%)
Strand = Plus / Minus
Query: 259 gagtctaatcaacatttgggtaagtctgacggcggcgggagcagcttctggtgcgggagg 318
||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 295 gagtctaatcagcatttgggaagatcggacggcggcgggagcagcttctggtgcgggagg 236
Query: 319 ctgccgtcgagcaccaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatgg 378
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 235 ctgccgtcaagcaccaaccatgccatcctgaggccccatgttgtgtgcacctccaaatgg 176
Query: 379 caatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatccgccg 438
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 175 caatgcatgaaccataccccggggttgtcggcaaggaagcgtatggccacccagccgccg 116
Query: 439 gccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttggacgggtcg 498
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 115 gccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttgggcgggtcg 56
Query: 499 ttgacggggtc 509
|| || |||||
Sbjct: 55 ttcaccgggtc 45
Score = 77.8 bits (39), Expect = 9e-013
Identities = 69/79 (87%), Gaps = 5/79 (6%)
Strand = Plus / Minus
Query: 100 aaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattgc 159
|||||||||||||||||||||||||| |||||| ||||| ||| ||||| ||||||
Sbjct: 462 aaaagtccaggtcagctaggaacgga-----ctagtttaaatggaagctgaaagaattgc 408
Query: 160 aattggcaatgaagaaagt 178
||||||||||||| |||||
Sbjct: 407 aattggcaatgaaaaaagt 389
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 357 gtctaattcacaattcccttt 337
>gb|CX610048.1|CX610048 ANR1_16_G06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_16_G06_A002 3', mRNA sequence
Length = 762
Score = 387 bits (195), Expect = e-106
Identities = 237/251 (94%)
Strand = Plus / Minus
Query: 259 gagtctaatcaacatttgggtaagtctgacggcggcgggagcagcttctggtgcgggagg 318
||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 507 gagtctaatcagcatttgggaagatcggacggcggcgggagcagcttctggtgcgggagg 448
Query: 319 ctgccgtcgagcaccaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatgg 378
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 447 ctgccgtcaagcaccaaccatgccatcctgaggccccatgttgtgtgcacctccaaatgg 388
Query: 379 caatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatccgccg 438
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 387 caatgcatgaaccataccccggggttgtcggcaaggaagcgtatggccacccagccgccg 328
Query: 439 gccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttggacgggtcg 498
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 327 gccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttgggcgggtcg 268
Query: 499 ttgacggggtc 509
|| || |||||
Sbjct: 267 ttcaccgggtc 257
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%), Gaps = 5/80 (6%)
Strand = Plus / Minus
Query: 99 aaaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattg 158
||||||||||||||||||||||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 675 aaaaagtccaggtcagctaggaacgga-----ctagtttaaatggaagctgaaagaattg 621
Query: 159 caattggcaatgaagaaagt 178
||||||||||||||||||||
Sbjct: 620 caattggcaatgaagaaagt 601
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 569 gtctaattcacaattcccttt 549
>gb|CF429359.1|CF429359 PH1_21_G06.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_21_G06_A002 3', mRNA sequence
Length = 542
Score = 373 bits (188), Expect = e-101
Identities = 237/252 (94%), Gaps = 1/252 (0%)
Strand = Plus / Minus
Query: 259 gagtctaatcaacatttgggtaagtctgacggcggcgggagcagcttctggtgcgggagg 318
||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 275 gagtctaatcagcatttgggaagatcggacggcggcgggagcagcttctggtgcgggagg 216
Query: 319 ctgccgtcgagcaccaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatgg 378
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 215 ctgccgtcaagcaccaaccatgccatcctgaggccccatgttgtgtgcacctccaaatgg 156
Query: 379 caatgcatgaac-caaaccccggggttgtcggcgaggaagcggatggccacccatccgcc 437
|||||||||||| || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 155 caatgcatgaacacataccccggggttgtcggcaaggaagcgtatggccacccagccgcc 96
Query: 438 ggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttggacgggtc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 95 ggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttgggcgggtc 36
Query: 498 gttgacggggtc 509
||| || |||||
Sbjct: 35 gttcaccgggtc 24
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%), Gaps = 5/80 (6%)
Strand = Plus / Minus
Query: 99 aaaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattg 158
||||||||||||||||||||||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 443 aaaaagtccaggtcagctaggaacgga-----ctagtttaaatggaagctgaaagaattg 389
Query: 159 caattggcaatgaagaaagt 178
||||||||||||||||||||
Sbjct: 388 caattggcaatgaagaaagt 369
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 16 ggtgcaagtcacgccattctttatt 40
|||||||||||||||||||||||||
Sbjct: 525 ggtgcaagtcacgccattctttatt 501
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 337 gtctaattcacaattcccttt 317
>gb|CF433802.1|CF433802 NIT1_30_E10.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_30_E10_A002 3', mRNA sequence
Length = 612
Score = 373 bits (188), Expect = e-101
Identities = 237/252 (94%), Gaps = 1/252 (0%)
Strand = Plus / Minus
Query: 259 gagtctaatcaacatttgggtaagtctgacggcggcgggagcagcttctggtgcgggagg 318
||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 365 gagtctaatcagcatttgggaagatcggacggcggcgggagcagcttctggtgcgggagg 306
Query: 319 ctgccgtcgagcaccaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatgg 378
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 305 ctgccgtcaagcaccaaccatgccatcctgaggccccatgttgtgtgcacctccaaatgg 246
Query: 379 caatgcatgaaccaaaccccg-gggttgtcggcgaggaagcggatggccacccatccgcc 437
|||||||||||||| |||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 245 caatgcatgaaccataccccgcgggttgtcggcaaggaagcgtatggccacccagccgcc 186
Query: 438 ggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttggacgggtc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 185 ggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttgggcgggtc 126
Query: 498 gttgacggggtc 509
||| || |||||
Sbjct: 125 gttcaccgggtc 114
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%), Gaps = 5/80 (6%)
Strand = Plus / Minus
Query: 99 aaaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattg 158
||||||||||||||||||||||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 533 aaaaagtccaggtcagctaggaacgga-----ctagtttaaatggaagctgaaagaattg 479
Query: 159 caattggcaatgaagaaagt 178
||||||||||||||||||||
Sbjct: 478 caattggcaatgaagaaagt 459
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 19 gcaagtcacgccattctttatt 40
||||||||||||||||||||||
Sbjct: 612 gcaagtcacgccattctttatt 591
>gb|BF586409.1|BF586409 FM1_28_D10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 529
Score = 357 bits (180), Expect = 6e-097
Identities = 231/248 (93%)
Strand = Plus / Minus
Query: 262 tctaatcaacatttgggtaagtctgacggcggcgggagcagcttctggtgcgggaggctg 321
|||||||| |||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctaatcagcatttgggaagatcggacggcggcgggagcagcttctggtgcgggaggctg 321
Query: 322 ccgtcgagcaccaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatggcaa 381
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 320 ccgtcaagcaccaaccatgccatcctgaggccccatgttgtgtgcacctccaaatggcaa 261
Query: 382 tgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatccgccggcc 441
||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 260 tgcatgaaccataccccggggttgtcggcaaggaagcgtatggccacccagacgccggcc 201
Query: 442 ggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttggacgggtcgttg 501
||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 200 ggcacgccgactgtgttgcgctcgacggggtcaacgaggttgaacttgggcgggtcgttc 141
Query: 502 acggggtc 509
|| |||||
Sbjct: 140 accgggtc 133
Score = 81.8 bits (41), Expect = 6e-014
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 126 acggactagttaaaatgcaagttgaaaaaattgcaattggcaatgaagaaagt 178
||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 529 acggactagtttaaatggaagttgaaagaattgcaattggcaatgaagaaagt 477
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 445 gtctaattcacaattcccttt 425
>gb|CF431027.1|CF431027 NIT1_4_F02.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_F02_A002 3', mRNA sequence
Length = 465
Score = 331 bits (167), Expect = 4e-089
Identities = 203/215 (94%)
Strand = Plus / Minus
Query: 259 gagtctaatcaacatttgggtaagtctgacggcggcgggagcagcttctggtgcgggagg 318
||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 215 gagtctaatcagcatttgggaagatcggacggcggcgggagcagcttctggtgcgggagg 156
Query: 319 ctgccgtcgagcaccaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatgg 378
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 155 ctgccgtcaagcaccaaccatgccatcctgaggccccatgttgtgtgcacctccaaatgg 96
Query: 379 caatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatccgccg 438
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 95 caatgcatgaaccataccccggggttgtcggcaaggaagcgtatggccacccagccgccg 36
Query: 439 gccggcacgccgacggtgttgcgctcgacggggtc 473
| |||||||||||||||||||||||||||||||||
Sbjct: 35 ggcggcacgccgacggtgttgcgctcgacggggtc 1
Score = 79.8 bits (40), Expect = 2e-013
Identities = 70/80 (87%), Gaps = 5/80 (6%)
Strand = Plus / Minus
Query: 99 aaaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattg 158
||||||||||||||||||||||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 383 aaaaagtccaggtcagctaggaacgga-----ctagtttaaatggaagctgaaagaattg 329
Query: 159 caattggcaatgaagaaagt 178
|||||||||| |||||||||
Sbjct: 328 caattggcaacgaagaaagt 309
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 19 gcaagtcacgccattctttatt 40
||||||||||||||||||||||
Sbjct: 462 gcaagtcacgccattctttatt 441
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 277 gtctaattcacaattcccttt 257
>gb|CL165339.1|CL165339 104_360_10808538_114_31818_138 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808538, DNA
sequence
Length = 761
Score = 214 bits (108), Expect = 6e-054
Identities = 132/140 (94%)
Strand = Plus / Plus
Query: 259 gagtctaatcaacatttgggtaagtctgacggcggcgggagcagcttctggtgcgggagg 318
||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 567 gagtctaatcagcatttgggaagatcggacggcggcgggagcagcttctggtgcgggagg 626
Query: 319 ctgccgtcgagcaccaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatgg 378
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 627 ctgccgtcaagcaccaaccatgccatcctgaggccccatgttgtgtgcacctccaaatgg 686
Query: 379 caatgcatgaaccaaacccc 398
|||||||||||||| |||||
Sbjct: 687 caatgcatgaaccatacccc 706
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%), Gaps = 5/80 (6%)
Strand = Plus / Plus
Query: 99 aaaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattg 158
|||||||||||||||||||||||||| ||||||| ||||| ||| ||||| |||||
Sbjct: 399 aaaaagtccaggtcagctaggaacgg-----actagtttaaatggaagctgaaagaattg 453
Query: 159 caattggcaatgaagaaagt 178
||||||||||||||||||||
Sbjct: 454 caattggcaatgaagaaagt 473
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 ggtgcaagtcacgccattctttatt 40
|||||||||||||||||||||||||
Sbjct: 317 ggtgcaagtcacgccattctttatt 341
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 505 gtctaattcacaattcccttt 525
>gb|CL165340.1|CL165340 104_360_10808538_116_31819_138 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808538, DNA
sequence
Length = 736
Score = 214 bits (108), Expect = 6e-054
Identities = 132/140 (94%)
Strand = Plus / Minus
Query: 259 gagtctaatcaacatttgggtaagtctgacggcggcgggagcagcttctggtgcgggagg 318
||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 244 gagtctaatcagcatttgggaagatcggacggcggcgggagcagcttctggtgcgggagg 185
Query: 319 ctgccgtcgagcaccaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatgg 378
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 184 ctgccgtcaagcaccaaccatgccatcctgaggccccatgttgtgtgcacctccaaatgg 125
Query: 379 caatgcatgaaccaaacccc 398
|||||||||||||| |||||
Sbjct: 124 caatgcatgaaccatacccc 105
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%), Gaps = 5/80 (6%)
Strand = Plus / Minus
Query: 99 aaaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattg 158
||||||||||||||||||||||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 412 aaaaagtccaggtcagctaggaacgga-----ctagtttaaatggaagctgaaagaattg 358
Query: 159 caattggcaatgaagaaagt 178
||||||||||||||||||||
Sbjct: 357 caattggcaatgaagaaagt 338
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 16 ggtgcaagtcacgccattctttatt 40
|||||||||||||||||||||||||
Sbjct: 494 ggtgcaagtcacgccattctttatt 470
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 306 gtctaattcacaattcccttt 286
>gb|CW221998.1|CW221998 104_657_11202146_148_37449_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202146, DNA
sequence
Length = 646
Score = 125 bits (63), Expect = 4e-027
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| || ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 146 gggttgtccgcacggaagcggatggcgacccagccgccggcgggcacgccgacggtgttg 87
Query: 460 cgctcgacggggtcgacgaggttgaacttgg 490
||||| |||||||||||||||||||||||||
Sbjct: 86 cgctccacggggtcgacgaggttgaacttgg 56
Score = 60.0 bits (30), Expect = 2e-007
Identities = 78/94 (82%)
Strand = Plus / Minus
Query: 299 gcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatcctgaggccccatg 358
|||||||||||| ||| ||||| ||||| ||||||| ||||||||| | ||||||||
Sbjct: 358 gcagcttctggttcggcaggctcccgtccagcaccagccatgccattttcaggccccagc 299
Query: 359 ttgtgtgcgcctccaaatggcaatgcatgaacca 392
| ||||| |||||| || ||||||||||||||
Sbjct: 298 tcatgtgcacctccaggtgacaatgcatgaacca 265
>gb|CW388622.1|CW388622 fsbb001f073h10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073h10, DNA
sequence
Length = 632
Score = 125 bits (63), Expect = 4e-027
Identities = 96/107 (89%)
Strand = Plus / Minus
Query: 403 ttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgc 462
||||| ||| |||| |||||||||||||| ||| | |||||||||||||||||||| |||
Sbjct: 444 ttgtctgcgcggaaccggatggccacccagccggccgccggcacgccgacggtgttccgc 385
Query: 463 tcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||||||||| |||||| |||||| ||| |||||||
Sbjct: 384 tcgacggggtcgacgaggttgtacttggccgggtccttggcggggtc 338
>gb|CW388623.1|CW388623 fsbb001f073h10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073h10, DNA
sequence
Length = 662
Score = 125 bits (63), Expect = 4e-027
Identities = 96/107 (89%)
Strand = Plus / Plus
Query: 403 ttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgc 462
||||| ||| |||| |||||||||||||| ||| | |||||||||||||||||||| |||
Sbjct: 466 ttgtctgcgcggaaccggatggccacccagccggccgccggcacgccgacggtgttccgc 525
Query: 463 tcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||||||||| |||||| |||||| ||| |||||||
Sbjct: 526 tcgacggggtcgacgaggttgtacttggccgggtccttggcggggtc 572
>gb|CW410053.1|CW410053 fsbb001f104k04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104k04, DNA
sequence
Length = 676
Score = 125 bits (63), Expect = 4e-027
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| || ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 439 gggttgtccgcacggaagcggatggcgacccagccgccggcgggcacgccgacggtgttg 380
Query: 460 cgctcgacggggtcgacgaggttgaacttgg 490
||||| |||||||||||||||||||||||||
Sbjct: 379 cgctccacggggtcgacgaggttgaacttgg 349
Score = 46.1 bits (23), Expect = 0.003
Identities = 78/95 (82%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 299 gcagcttctggtgcgggaggctgcc-gtcgagcaccaaccatgccatcctgaggccccat 357
|||||||||||| ||| ||||| || ||| ||||||| ||||||||| | ||||||||
Sbjct: 652 gcagcttctggttcggcaggcttcccgtccagcaccacccatgccattttcaggccccag 593
Query: 358 gttgtgtgcgcctccaaatggcaatgcatgaacca 392
| ||||| |||||| || ||||||||||||||
Sbjct: 592 ctcatgtgcacctccaggtgacaatgcatgaacca 558
>gb|BE360607.1|BE360607 DG1_64_C02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 640
Score = 107 bits (54), Expect = 1e-021
Identities = 114/134 (85%)
Strand = Plus / Minus
Query: 376 tggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatccg 435
||||||||||| | ||| ||||| |||||||||||||||||||||| ||| ||||| |||
Sbjct: 392 tggcaatgcatcagccacacccccgggttgtcggcgaggaagcggacggcgacccagccg 333
Query: 436 ccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttggacggg 495
||| ||||||| || |||||| ||||| ||||||||| |||||||| | |||| ||||
Sbjct: 332 gcggtgggcacgctgatggtgttccgctccacggggtcggcgaggttgtagttgggcggg 273
Query: 496 tcgttgacggggtc 509
||||| || |||||
Sbjct: 272 tcgttcaccgggtc 259
>gb|CW489913.1|CW489913 fsbb001f275b19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f275b19, DNA
sequence
Length = 712
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%), Gaps = 5/80 (6%)
Strand = Plus / Plus
Query: 99 aaaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattg 158
|||||||||||||||||||||||||| ||||||| ||||| ||| ||||| |||||
Sbjct: 535 aaaaagtccaggtcagctaggaacgg-----actagtttaaatggaagctgaaagaattg 589
Query: 159 caattggcaatgaagaaagt 178
||||||||||||||||||||
Sbjct: 590 caattggcaatgaagaaagt 609
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 ggtgcaagtcacgccattctttatt 40
|||||||||||||||||||||||||
Sbjct: 453 ggtgcaagtcacgccattctttatt 477
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 641 gtctaattcacaattcccttt 661
>gb|CD461728.1|CD461728 SA1_35_C09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_35_C09_A002 3', mRNA sequence
Length = 566
Score = 87.7 bits (44), Expect = 9e-016
Identities = 116/140 (82%)
Strand = Plus / Minus
Query: 299 gcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatcctgaggccccatg 358
|||||||||||| ||| ||||| ||||| ||||||| ||||||||| | ||||||||
Sbjct: 140 gcagcttctggttcggcaggctcccgtccagcaccagccatgccattttcaggccccagc 81
Query: 359 ttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaagc 418
| ||||| |||||| || |||||||||||||| || || |||||||| || ||||||
Sbjct: 80 tcatgtgcacctccaggtgacaatgcatgaaccacacacctgggttgtccgcacggaagc 21
Query: 419 ggatggccacccatccgccg 438
||||||| ||||| ||||||
Sbjct: 20 ggatggcgacccagccgccg 1
>gb|CF427713.1|CF427713 PH1_10_E06.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_10_E06_A002 3', mRNA sequence
Length = 219
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%), Gaps = 5/80 (6%)
Strand = Plus / Minus
Query: 99 aaaaagtccaggtcagctaggaacggaacggactagttaaaatgcaagttgaaaaaattg 158
||||||||||||||||||||||||||| |||||| ||||| ||| |||||||||||
Sbjct: 131 aaaaagtccaggtcagctaggaacgga-----ctagtttaaatggaagctgaaaaaattg 77
Query: 159 caattggcaatgaagaaagt 178
|||||||||||||| |||||
Sbjct: 76 caattggcaatgaaaaaagt 57
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 203 gtctaattcacaattcccttt 223
|||||||||||||||||||||
Sbjct: 25 gtctaattcacaattcccttt 5
>gb|CW111262.1|CW111262 104_484_11104210_148_34528_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104210, DNA
sequence
Length = 534
Score = 75.8 bits (38), Expect = 3e-012
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 413 ggaagcggatggccacccatccgccggccggca-cgccgacggtgttgcgctcgacgggg 471
|||| |||||||||||||| ||| | |||| || ||| ||||||||| ||||||||||||
Sbjct: 260 ggaaccggatggccacccagccggccgccgtcatcgcagacggtgttccgctcgacgggg 201
Query: 472 tcgacgaggttgaacttggacgggtc 497
|||| ||||||| |||||| ||||||
Sbjct: 200 tcgaggaggttgtacttggccgggtc 175
>gb|CW272516.1|CW272516 104_744_11403454_116_36228_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403454, DNA
sequence
Length = 608
Score = 67.9 bits (34), Expect = 9e-010
Identities = 106/130 (81%)
Strand = Plus / Plus
Query: 361 gtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcgg 420
|||||| |||||| ||| || |||| ||||||||| || || ||||| || ||| |||
Sbjct: 283 gtgtgcacctccagatgacagtgcaggaaccaaacacctggattgtctgccctgaaccgg 342
Query: 421 atggccacccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgagg 480
||||| ||| |||||||| ||||||||||||||||| | |||| ||||||||||||
Sbjct: 343 atggcggtccagccgccggcgggcacgccgacggtgttcctctcgggcgggtcgacgagg 402
Query: 481 ttgaacttgg 490
||| ||||||
Sbjct: 403 ttgtacttgg 412
>gb|CW274119.1|CW274119 104_746_11404259_116_35364_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404259, DNA
sequence
Length = 648
Score = 61.9 bits (31), Expect = 5e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 376 tggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatcc 434
||||| ||||||||||| |||| ||||||||||||| |||||||| |||| |||||||
Sbjct: 215 tggcagtgcatgaaccacgcccccgggttgtcggcgacgaagcggacggccgcccatcc 273
>gb|CD212007.1|CD212007 HS1_68_H02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_68_H02_A012 3', mRNA sequence
Length = 515
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 299 gcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccat 344
|||||||||||| ||| ||||| ||||| ||||||| |||||||||
Sbjct: 64 gcagcttctggttcggcaggctcccgtccagcaccagccatgccat 19
>gb|CW135608.1|CW135608 104_520_11117939_148_34834_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117939, DNA
sequence
Length = 691
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 359 ttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
||||||| ||||||| ||||||||||||||||||||
Sbjct: 375 ttgtgtgaacctccaagtggcaatgcatgaaccaaac 411
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 420 gatggccacccatccgccggccggcacgccgacggtgtt 458
|||||| ||||| || |||| ||||||||||||||||||
Sbjct: 513 gatggcgacccaaccaccggacggcacgccgacggtgtt 551
>gb|CL178579.1|CL178579 104_386_10894676_148_31911_356 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894676, DNA
sequence
Length = 734
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| || ||||| | |||| |||||||||||||| ||| || || |||||||||
Sbjct: 563 aggccccaggtgatgtgcacgtccagatggcaatgcatgagccacacacctgggttgtcg 622
Query: 409 gcga 412
||||
Sbjct: 623 gcga 626
>gb|CW184226.1|CW184226 104_600_11165041_116_36681_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165041, DNA
sequence
Length = 601
Score = 48.1 bits (24), Expect = 8e-004
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 376 tggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatccg 435
||||| ||||||| ||| || || ||||||| |||| |||||||||| | |||| |||
Sbjct: 513 tggcagtgcatgatccagacgcccgggttgttggcggtgaagcggatgacggcccagccg 454
Query: 436 ccggccggcacgccgacggtgttgcgct 463
|||| || ||| |||||||||||||||
Sbjct: 453 gcggcggggacggcgacggtgttgcgct 426
>gb|CW222901.1|CW222901 104_658_11202621_116_37181_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202621, DNA
sequence
Length = 660
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| || ||||| | |||| |||||||||||||| ||| || || |||||||||
Sbjct: 461 aggccccaggtgatgtgcacgtccagatggcaatgcatgagccacacacctgggttgtcg 402
Query: 409 gcga 412
||||
Sbjct: 401 gcga 398
>gb|CW222902.1|CW222902 104_658_11202621_148_37182_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202621, DNA
sequence
Length = 697
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| || ||||| | |||| |||||||||||||| ||| || || |||||||||
Sbjct: 538 aggccccaggtgatgtgcacgtccagatggcaatgcatgagccacacacctgggttgtcg 597
Query: 409 gcga 412
||||
Sbjct: 598 gcga 601
>gb|CW321938.1|CW321938 104_815_11475822_116_35944_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475822, DNA
sequence
Length = 577
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| || ||||| | |||| |||||||||||||| ||| || || |||||||||
Sbjct: 137 aggccccaggtgatgtgcacgtccagatggcaatgcatgagccacacacctgggttgtcg 196
Query: 409 gcga 412
||||
Sbjct: 197 gcga 200
>gb|CB927210.1|CB927210 ABA1_14_D11.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_14_D11_A012 3', mRNA sequence
Length = 543
Score = 48.1 bits (24), Expect = 8e-004
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 376 tggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatccg 435
||||| ||||||||||| | ||| ||||| | ||||||||||||||| | |||| |||
Sbjct: 352 tggcagtgcatgaaccacatcccagggttatttgcgaggaagcggatgacagcccagccg 293
Query: 436 ccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaact 487
|| | || || |||||||||||||||| |||| ||||||||||||||
Sbjct: 292 cccgtggggacagcgacggtgttgcgctcctgcgggttgacgaggttgaact 241
>gb|CF071060.1|CF071060 FE1_15_G11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_G11_A002 3', mRNA sequence
Length = 665
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| || ||||| | |||| |||||||||||||| ||| || || |||||||||
Sbjct: 385 aggccccaggtgatgtgcacgtccagatggcaatgcatgagccacacacctgggttgtcg 326
Query: 409 gcga 412
||||
Sbjct: 325 gcga 322
>gb|CL191905.1|CL191905 104_414_10939873_114_32245_009 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10939873, DNA
sequence
Length = 692
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 cattctttattttcagagga 49
||||||||||||||||||||
Sbjct: 469 cattctttattttcagagga 488
>gb|BG948193.1|BG948193 IP1_10_E04.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.19
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
||||||| ||||||||||| ||||| ||||| || |||||
Sbjct: 48 cctccaagtggcaatgcataaaccatacccctggattgtc 9
>gb|CX619752.1|CX619752 GABR1_47_C10.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_47_C10_A002 5', mRNA sequence
Length = 525
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 398 cggggttgtcggcgaggaag 417
||||||||||||||||||||
Sbjct: 305 cggggttgtcggcgaggaag 286
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 157,116
Number of Sequences: 832831
Number of extensions: 157116
Number of successful extensions: 43775
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43640
Number of HSP's gapped (non-prelim): 116
length of query: 509
length of database: 491,359,669
effective HSP length: 19
effective length of query: 490
effective length of database: 475,535,880
effective search space: 233012581200
effective search space used: 233012581200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)