BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228901.3.1
(1173 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN148934.1|CN148934 WOUND1_59_E11.g1_A002 Wounded leaves... 577 e-163
gb|CL167818.1|CL167818 104_365_10810355_116_31805_035 Sorgh... 470 e-130
gb|CW186827.1|CW186827 104_605_11166770_148_36715_015 Sorgh... 470 e-130
gb|CW462407.1|CW462407 fsbb001f210i19k0 Sorghum methylation... 283 2e-074
gb|CW209767.1|CW209767 104_640_11189429_148_37429_031 Sorgh... 276 4e-072
gb|CW186826.1|CW186826 104_605_11166770_116_36716_015 Sorgh... 119 6e-025
gb|CW209766.1|CW209766 104_640_11189429_116_37430_031 Sorgh... 111 1e-022
gb|CW399915.1|CW399915 fsbb001f089p08f0 Sorghum methylation... 62 1e-007
gb|BZ333147.1|BZ333147 hx56b02.b1 WGS-SbicolorF (JM107 adap... 54 3e-005
gb|CL182327.1|CL182327 104_393_10897349_148_31921_341 Sorgh... 54 3e-005
gb|CL184870.1|CL184870 104_398_10899146_114_32369_007 Sorgh... 54 3e-005
gb|CL184871.1|CL184871 104_398_10899146_116_32373_007 Sorgh... 54 3e-005
gb|CW104023.1|CW104023 104_472_11012205_116_34432_081 Sorgh... 54 3e-005
gb|CW104024.1|CW104024 104_472_11012205_148_34436_081 Sorgh... 54 3e-005
gb|CW160293.1|CW160293 104_566_11149807_116_36428_020 Sorgh... 54 3e-005
gb|CW477828.1|CW477828 fsbb001f235f19f0 Sorghum methylation... 54 3e-005
gb|BM325487.1|BM325487 PIC1_45_B09.b1_A002 Pathogen-infecte... 54 3e-005
gb|CD211984.1|CD211984 HS1_67_B09.g1_A012 Heat-shocked seed... 54 3e-005
gb|CL698595.2|CL698595 SP__Ba0032E06.r SP__Ba Sorghum propi... 50 5e-004
gb|CL184734.1|CL184734 104_398_10899059_116_32372_044 Sorgh... 42 0.11
gb|CW275926.1|CW275926 104_749_11405218_148_35393_041 Sorgh... 42 0.11
gb|CW023127.1|CW023127 104_162_10432266_5_30000 Sorghum met... 40 0.45
gb|CW053739.1|CW053739 104_294_10516143_114_30182 Sorghum m... 40 0.45
gb|CW352898.1|CW352898 fsbb001f015g11f0 Sorghum methylation... 40 0.45
gb|CW352899.1|CW352899 fsbb001f015g11k0 Sorghum methylation... 40 0.45
gb|CN148854.1|CN148854 WOUND1_59_E11.b1_A002 Wounded leaves... 40 0.45
>gb|CN148934.1|CN148934 WOUND1_59_E11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_59_E11_A002 5', mRNA sequence
Length = 906
Score = 577 bits (291), Expect = e-163
Identities = 463/519 (89%), Gaps = 6/519 (1%)
Strand = Plus / Plus
Query: 65 gcagccatgccaatgacaatcgagcgtgatctccacatggccacagggaacggagaaact 124
||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 78 gcagccatgcccatgagaatcgagcgtgatctccacatggctacagggaatggagaaact 137
Query: 125 agctacacgaaaaactctaggattcaggagaaagttatgtttcagatcaagccagtcctt 184
|||||||| ||||| ||||||||||| ||||||| ||||||||| || ||||| ||||||
Sbjct: 138 agctacacaaaaaattctaggattcaagagaaagctatgtttcacatgaagccggtcctt 197
Query: 185 gaggaggccactagagcagcatactcagctctcctccctcaaaccatggtcgtggccgac 244
|||||||||||||||| || |||| |||||||||||||| |||||||||| |||||||||
Sbjct: 198 gaggaggccactagagaagtatacacagctctcctccctaaaaccatggtggtggccgac 257
Query: 245 ttaggctgctcatcggggcctaacacactgcgcttcatctccgaggtgattggcatcata 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 258 ttaggctgctcatcggggcctaacacactgcgcttcgtctccgaggtgattggcatcata 317
Query: 305 gctcgccattgcaaagaac---acgaccgacgacatgactac---ccacaacttcagttc 358
|||||||||||||| |||| ||||||||||||||||| | || || |||||||||
Sbjct: 318 gctcgccattgcaaggaacttgacgaccgacgacatgaccgcccgccgcagcttcagttc 377
Query: 359 ttcctgaatgacctgccgggaaacgacttcaacaatctcttcctactcatccagcagttc 418
|||| |||||||| || ||||| ||||||||||||||||||| || ||||||||||||
Sbjct: 378 ttccccaatgaccttcccggaaatgacttcaacaatctcttccagctgatccagcagttc 437
Query: 419 aataagtcgattgcaagaaaccacaagggtgaggcagccgaggcactgcctccgtgctat 478
||||||||| |||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct: 438 cataagtcgacggcaagaaagcacaagggtgaggcagaagaggcactgcctccttgctat 497
Query: 479 atctctggtttgccaggctccttctacactaggatcttccctagcgaaagcgttcacctt 538
||| | || ||||| || |||| ||||||||||||||||||||| ||||| ||||||||
Sbjct: 498 atcaccgggttgccgggttcctactacactaggatcttccctagtgaaagtgttcacctg 557
Query: 539 ttccactctttgttctccgttcactggcactctcaggca 577
|||||||||||||||| | |||| |||| ||||||||||
Sbjct: 558 ttccactctttgttctgccttcagtggcgctctcaggca 596
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 761 caactgaaggacacccaaaataaatgcctcgatatctacatcacaaa 807
|||||||||| || | |||| | |||||| |||||||||||||||||
Sbjct: 603 caactgaagggcatcaaaaaaacatgcctagatatctacatcacaaa 649
>gb|CL167818.1|CL167818 104_365_10810355_116_31805_035 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810355, DNA
sequence
Length = 573
Score = 470 bits (237), Expect = e-130
Identities = 385/433 (88%), Gaps = 6/433 (1%)
Strand = Plus / Plus
Query: 149 caggagaaagttatgtttcagatcaagccagtccttgaggaggccactagagcagcatac 208
|||||||||| ||||||||| || ||||| |||||||||||||||||||||| || ||||
Sbjct: 54 caggagaaagctatgtttcacatgaagccggtccttgaggaggccactagagaagtatac 113
Query: 209 tcagctctcctccctcaaaccatggtcgtggccgacttaggctgctcatcggggcctaac 268
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 114 acagctctcctccctaaaaccatggtggtggccgacttaggctgctcatcggggcctaac 173
Query: 269 acactgcgcttcatctccgaggtgattggcatcatagctcgccattgcaaagaac---ac 325
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 174 acactgcgcttcgtctccgaggtgattggcatcatagctcgccattgcaaggaacttgac 233
Query: 326 gaccgacgacatgactac---ccacaacttcagttcttcctgaatgacctgccgggaaac 382
||||||||||||||| | || || |||||||||||||| |||||||| || |||||
Sbjct: 234 gaccgacgacatgaccgcccgccgcagcttcagttcttcctcaatgaccttcccggaaat 293
Query: 383 gacttcaacaatctcttcctactcatccagcagttcaataagtcgattgcaagaaaccac 442
||||||||||||||||||| || |||||||||||| ||||||||| |||||||| |||
Sbjct: 294 gacttcaacaatctcttccagctgatccagcagttccataagtcgacggcaagaaagcac 353
Query: 443 aagggtgaggcagccgaggcactgcctccgtgctatatctctggtttgccaggctccttc 502
||||||||||||| |||||||||||||| ||||||||| | || ||||| || |||| |
Sbjct: 354 aagggtgaggcagaagaggcactgcctccttgctatatcaccgggttgccgggttcctac 413
Query: 503 tacactaggatcttccctagcgaaagcgttcaccttttccactctttgttctccgttcac 562
|||||||||||||||||||| ||||| |||||||| |||||||||||||||| | ||||
Sbjct: 414 tacactaggatcttccctagtgaaagtgttcacctgttccactctttgttctgccttcag 473
Query: 563 tggcactctcagg 575
|||| ||||||||
Sbjct: 474 tggcgctctcagg 486
>gb|CW186827.1|CW186827 104_605_11166770_148_36715_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166770, DNA
sequence
Length = 742
Score = 470 bits (237), Expect = e-130
Identities = 385/433 (88%), Gaps = 6/433 (1%)
Strand = Plus / Minus
Query: 149 caggagaaagttatgtttcagatcaagccagtccttgaggaggccactagagcagcatac 208
|||||||||| ||||||||| || ||||| |||||||||||||||||||||| || ||||
Sbjct: 554 caggagaaagctatgtttcacatgaagccggtccttgaggaggccactagagaagtatac 495
Query: 209 tcagctctcctccctcaaaccatggtcgtggccgacttaggctgctcatcggggcctaac 268
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 494 acagctctcctccctaaaaccatggtggtggccgacttaggctgctcatcggggcctaac 435
Query: 269 acactgcgcttcatctccgaggtgattggcatcatagctcgccattgcaaagaac---ac 325
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 434 acactgcgcttcgtctccgaggtgattggcatcatagctcgccattgcaaggaacttgac 375
Query: 326 gaccgacgacatgactac---ccacaacttcagttcttcctgaatgacctgccgggaaac 382
||||||||||||||| | || || |||||||||||||| |||||||| || |||||
Sbjct: 374 gaccgacgacatgaccgcccgccgcagcttcagttcttcctcaatgaccttcccggaaat 315
Query: 383 gacttcaacaatctcttcctactcatccagcagttcaataagtcgattgcaagaaaccac 442
||||||||||||||||||| || |||||||||||| ||||||||| |||||||| |||
Sbjct: 314 gacttcaacaatctcttccagctgatccagcagttccataagtcgacggcaagaaagcac 255
Query: 443 aagggtgaggcagccgaggcactgcctccgtgctatatctctggtttgccaggctccttc 502
||||||||||||| |||||||||||||| ||||||||| | || ||||| || |||| |
Sbjct: 254 aagggtgaggcagaagaggcactgcctccttgctatatcaccgggttgccgggttcctac 195
Query: 503 tacactaggatcttccctagcgaaagcgttcaccttttccactctttgttctccgttcac 562
|||||||||||||||||||| ||||| |||||||| |||||||||||||||| | ||||
Sbjct: 194 tacactaggatcttccctagtgaaagtgttcacctgttccactctttgttctgccttcag 135
Query: 563 tggcactctcagg 575
|||| ||||||||
Sbjct: 134 tggcgctctcagg 122
>gb|CW462407.1|CW462407 fsbb001f210i19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f210i19, DNA
sequence
Length = 587
Score = 283 bits (143), Expect = 2e-074
Identities = 251/286 (87%), Gaps = 6/286 (2%)
Strand = Plus / Plus
Query: 149 caggagaaagttatgtttcagatcaagccagtccttgaggaggccactagagcagcatac 208
|||||||||| |||| |||| || ||||| | |||||||||||||||||||| || ||||
Sbjct: 301 caggagaaagctatggttcacatgaagccgggccttgaggaggccactagagaagtatac 360
Query: 209 tcagctctcctccctcaaaccatggtcgtggccgacttaggctgctcatcggggcctaac 268
|||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||
Sbjct: 361 acagctctcctccctaaaaccatggggggggccgacttangctgctcatcggggcctaac 420
Query: 269 acactgcgcttcatctccgaggtgattggcatcatagctcgccattgcaaagaac---ac 325
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 421 acactgcgcttcgtctccgaggtgattggcatcatagctcgccattgcaaggaacttgac 480
Query: 326 gaccgacgacatgactac---ccacaacttcagttcttcctgaatgacctgccgggaaac 382
||||||||||||||| | || || |||||||||||||| |||||||| || || ||
Sbjct: 481 gaccgacgacatgaccgcccgccgcagcttcagttcttcctcaatgaccttcccgggaat 540
Query: 383 gacttcaacaatctcttcctactcatccagcagttcaataagtcga 428
||||||||||||||||||| || |||||||||||| |||||||||
Sbjct: 541 gacttcaacaatctcttccagctgatccagcagttccataagtcga 586
Score = 115 bits (58), Expect = 1e-023
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 65 gcagccatgccaatgacaatcgagcgtgatctccacatggccacagggaacggagaaact 124
||||||||| | |||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 33 gcagccatggccatgagaatcgagcgtgatctccacatggctacagggaatggagaaact 92
Query: 125 agctacacgaaaaactctaggattca 150
|||||||| ||||| |||||||||||
Sbjct: 93 agctacacaaaaaattctaggattca 118
>gb|CW209767.1|CW209767 104_640_11189429_148_37429_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189429, DNA
sequence
Length = 727
Score = 276 bits (139), Expect = 4e-072
Identities = 215/239 (89%), Gaps = 6/239 (2%)
Strand = Plus / Minus
Query: 149 caggagaaagttatgtttcagatcaagccagtccttgaggaggccactagagcagcatac 208
|||||||||| ||||||||| || ||||| |||||||||||||||||||||| || ||||
Sbjct: 241 caggagaaagctatgtttcacatgaagccggtccttgaggaggccactagagaagtatac 182
Query: 209 tcagctctcctccctcaaaccatggtcgtggccgacttaggctgctcatcggggcctaac 268
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 181 acagctctcctccctaaaaccatggtggtggccgacttaggctgctcatcggggcctaac 122
Query: 269 acactgcgcttcatctccgaggtgattggcatcatagctcgccattgcaaagaac---ac 325
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 121 acactgcgcttcgtctccgaggtgattggcatcatagctcgccattgcaaggaacttgac 62
Query: 326 gaccgacgacatgactac---ccacaacttcagttcttcctgaatgacctgccgggaaa 381
||||||||||||||| | || || |||||||||||||| |||||||| || |||||
Sbjct: 61 gaccgacgacatgaccgcccgccgcagcttcagttcttcctcaatgaccttcccggaaa 3
Score = 123 bits (62), Expect = 4e-026
Identities = 80/86 (93%)
Strand = Plus / Minus
Query: 65 gcagccatgccaatgacaatcgagcgtgatctccacatggccacagggaacggagaaact 124
||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 509 gcagccatgcccatgagaatcgagcgtgatctccacatggctacagggaatggagaaact 450
Query: 125 agctacacgaaaaactctaggattca 150
|||||||| ||||| |||||||||||
Sbjct: 449 agctacacaaaaaattctaggattca 424
>gb|CW186826.1|CW186826 104_605_11166770_116_36716_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166770, DNA
sequence
Length = 730
Score = 119 bits (60), Expect = 6e-025
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 65 gcagccatgccaatgacaatcgagcgtgatctccacatggccacagggaacggagaaact 124
||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 601 gcagccatgcccatgagaatcgagcgtgatctccacatggctacagggaatggagaaact 660
Query: 125 agctacacgaaaaactctaggatt 148
|||||||| ||||| |||||||||
Sbjct: 661 agctacacaaaaaattctaggatt 684
>gb|CW209766.1|CW209766 104_640_11189429_116_37430_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189429, DNA
sequence
Length = 674
Score = 111 bits (56), Expect = 1e-022
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 65 gcagccatgccaatgacaatcgagcgtgatctccacatggccacagggaacggagaaact 124
||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 566 gcagccatgcccatgagaatcgagcgtgatctccacatggctacagggaatggagaaact 625
Query: 125 agctacacgaaaaactctaggatt 148
|||||||| | ||| |||||||||
Sbjct: 626 agctacacaagaaattctaggatt 649
>gb|CW399915.1|CW399915 fsbb001f089p08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f089p08, DNA
sequence
Length = 659
Score = 61.9 bits (31), Expect = 1e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 737 tatatacatatataggcctcacaacaactgaaggacacccaaaataaatgcctcgatatc 796
||||||||||||||||| | | |||||||||| |||| |||| | |||||| ||||||
Sbjct: 101 tatatacatatataggcaccggagcaactgaagggcaccaaaaaaacatgcctagatatc 160
Query: 797 tacatcacaaa 807
|||||||||||
Sbjct: 161 tacatcacaaa 171
>gb|BZ333147.1|BZ333147 hx56b02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx56b02 5', DNA sequence
Length = 513
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 353 cagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||||||||| |||||||| || ||||||||||||
Sbjct: 54 cagttcttcctgaacgacctgcccgggaacgacttcaac 16
Score = 50.1 bits (25), Expect = 5e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 228 ccatggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccg 287
|||||||||| || ||| | |||||||| |||||||| ||||| |||| | || ||||||
Sbjct: 185 ccatggtcgtcgcggacctcggctgctcgtcggggcccaacacgctgctcgtcgtctccg 126
Query: 288 aggtg 292
|||||
Sbjct: 125 aggtg 121
>gb|CL182327.1|CL182327 104_393_10897349_148_31921_341 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897349, DNA
sequence
Length = 665
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 353 cagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||||||||| |||||||| || ||||||||||||
Sbjct: 462 cagttcttcctgaacgacctgcccgggaacgacttcaac 500
Score = 50.1 bits (25), Expect = 5e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 228 ccatggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccg 287
|||||||||| || ||| | |||||||| |||||||| ||||| |||| | || ||||||
Sbjct: 331 ccatggtcgtcgcggacctcggctgctcgtcggggcccaacacgctgctcgtcgtctccg 390
Query: 288 aggtg 292
|||||
Sbjct: 391 aggtg 395
>gb|CL184870.1|CL184870 104_398_10899146_114_32369_007 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899146, DNA
sequence
Length = 721
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 353 cagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||| |||||||| |||||||| ||||||||||||
Sbjct: 352 cagttctttctgaatgatctgccgggcaacgacttcaac 390
Score = 40.1 bits (20), Expect = 0.45
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 251 tgctcatcggggcctaacacactgcgcttcatctccgaggtgat 294
||||| |||||||| ||||| |||| | || |||||||||||||
Sbjct: 235 tgctcgtcggggccgaacacgctgctcgtcgtctccgaggtgat 278
>gb|CL184871.1|CL184871 104_398_10899146_116_32373_007 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899146, DNA
sequence
Length = 730
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 353 cagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||| |||||||| |||||||| ||||||||||||
Sbjct: 502 cagttctttctgaatgatctgccgggcaacgacttcaac 464
Score = 40.1 bits (20), Expect = 0.45
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 251 tgctcatcggggcctaacacactgcgcttcatctccgaggtgat 294
||||| |||||||| ||||| |||| | || |||||||||||||
Sbjct: 619 tgctcgtcggggccgaacacgctgctcgtcgtctccgaggtgat 576
>gb|CW104023.1|CW104023 104_472_11012205_116_34432_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012205, DNA
sequence
Length = 728
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 353 cagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||| |||||||| |||||||| ||||||||||||
Sbjct: 431 cagttctttctgaatgatctgccgggcaacgacttcaac 469
Score = 40.1 bits (20), Expect = 0.45
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 251 tgctcatcggggcctaacacactgcgcttcatctccgaggtgat 294
||||| |||||||| ||||| |||| | || |||||||||||||
Sbjct: 314 tgctcgtcggggccgaacacgctgctcgtcgtctccgaggtgat 357
>gb|CW104024.1|CW104024 104_472_11012205_148_34436_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012205, DNA
sequence
Length = 641
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 353 cagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||| |||||||| |||||||| ||||||||||||
Sbjct: 560 cagttctttctgaatgatctgccgggcaacgacttcaac 522
>gb|CW160293.1|CW160293 104_566_11149807_116_36428_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149807, DNA
sequence
Length = 755
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 353 cagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||| |||||||| |||||||| ||||||||||||
Sbjct: 315 cagttctttctgaatgatctgccgggcaacgacttcaac 277
Score = 40.1 bits (20), Expect = 0.45
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 251 tgctcatcggggcctaacacactgcgcttcatctccgaggtgat 294
||||| |||||||| ||||| |||| | || |||||||||||||
Sbjct: 432 tgctcgtcggggccgaacacgctgctcgtcgtctccgaggtgat 389
>gb|CW477828.1|CW477828 fsbb001f235f19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235f19, DNA
sequence
Length = 580
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 353 cagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||||||||| |||||||| || ||||||||||||
Sbjct: 331 cagttcttcctgaacgacctgcccgggaacgacttcaac 293
Score = 50.1 bits (25), Expect = 5e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 228 ccatggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccg 287
|||||||||| || ||| | |||||||| |||||||| ||||| |||| | || ||||||
Sbjct: 462 ccatggtcgtcgcggacctcggctgctcgtcggggcccaacacgctgctcgtcgtctccg 403
Query: 288 aggtg 292
|||||
Sbjct: 402 aggtg 398
>gb|BM325487.1|BM325487 PIC1_45_B09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 510
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 353 cagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||||||||| |||||||| || ||||||||||||
Sbjct: 25 cagttcttcctgaacgacctgcccgggaacgacttcaac 63
>gb|CD211984.1|CD211984 HS1_67_B09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_67_B09_A012 5', mRNA sequence
Length = 681
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 353 cagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||||||||| |||||||| || ||||||||||||
Sbjct: 398 cagttcttcctgaacgacctgcccgggaacgacttcaac 436
Score = 50.1 bits (25), Expect = 5e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 228 ccatggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccg 287
|||||||||| || ||| | |||||||| |||||||| ||||| |||| | || ||||||
Sbjct: 267 ccatggtcgtcgcggacctcggctgctcgtcggggcccaacacgctgctcgtcgtctccg 326
Query: 288 aggtg 292
|||||
Sbjct: 327 aggtg 331
>gb|CL698595.2|CL698595 SP__Ba0032E06.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0032E06 3', DNA sequence
Length = 659
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 348 aacttcagttcttcctgaatgacctgccgggaaacgacttcaacaatctcttc 400
|||||||| |||||||||||||||| || || || ||||||||| | ||||||
Sbjct: 188 aacttcagatcttcctgaatgacctacctggtaatgacttcaaccagctcttc 240
Score = 48.1 bits (24), Expect = 0.002
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 225 aaaccatggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatct 284
||||||||||| | || ||| |||| ||||| ||||| || |||||| ||| ||||||||
Sbjct: 65 aaaccatggtcattgctgacctaggatgctcttcgggaccaaacacattgctcttcatct 124
Query: 285 ccgaggtgattggcatcatagctcgcca 312
|| | ||||| |||||||||| ||||
Sbjct: 125 ccaatgtgataaacatcatagctggcca 152
>gb|CL184734.1|CL184734 104_398_10899059_116_32372_044 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899059, DNA
sequence
Length = 713
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 299 atcatagctcgccattgcaaagaac 323
||||||||||||||||||| |||||
Sbjct: 271 atcatagctcgccattgcacagaac 295
>gb|CW275926.1|CW275926 104_749_11405218_148_35393_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405218, DNA
sequence
Length = 687
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 299 atcatagctcgccattgcaaagaac 323
||||||||||||||||||| |||||
Sbjct: 304 atcatagctcgccattgcacagaac 328
>gb|CW023127.1|CW023127 104_162_10432266_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432266, DNA
sequence
Length = 262
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 274 gcgcttcatctccgaggtgattgg 297
|||||||| |||||||||||||||
Sbjct: 151 gcgcttcagctccgaggtgattgg 174
>gb|CW053739.1|CW053739 104_294_10516143_114_30182 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516143, DNA
sequence
Length = 114
Score = 40.1 bits (20), Expect = 0.45
Identities = 46/52 (88%), Gaps = 2/52 (3%)
Strand = Plus / Minus
Query: 149 caggagaaagttatgtttcagatcaagccagtccttgaggaggccactagag 200
|||||||||| ||| ||||| || ||||| ||| ||||||||||||||||||
Sbjct: 60 caggagaaagctat-tttcacatgaagccggtc-ttgaggaggccactagag 11
>gb|CW352898.1|CW352898 fsbb001f015g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f015g11, DNA
sequence
Length = 432
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 274 gcgcttcatctccgaggtgattgg 297
|||||||| |||||||||||||||
Sbjct: 43 gcgcttcagctccgaggtgattgg 66
>gb|CW352899.1|CW352899 fsbb001f015g11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f015g11, DNA
sequence
Length = 425
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 274 gcgcttcatctccgaggtgattgg 297
|||||||| |||||||||||||||
Sbjct: 381 gcgcttcagctccgaggtgattgg 358
>gb|CN148854.1|CN148854 WOUND1_59_E11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_59_E11_A002 3', mRNA sequence
Length = 752
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 784 atgcctcgatatctacatcacaaa 807
|||||| |||||||||||||||||
Sbjct: 19 atgcctagatatctacatcacaaa 42
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 310,688
Number of Sequences: 832831
Number of extensions: 310688
Number of successful extensions: 86627
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 86560
Number of HSP's gapped (non-prelim): 62
length of query: 1173
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1153
effective length of database: 474,703,049
effective search space: 547332615497
effective search space used: 547332615497
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)