BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8161196.3.1
(825 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN142825.1|CN142825 WOUND1_12_B08.g1_A002 Wounded leaves... 827 0.0
gb|CN151664.1|CN151664 WOUND1_76_G03.g1_A002 Wounded leaves... 827 0.0
gb|CW207479.1|CW207479 104_636_11188164_148_36970_038 Sorgh... 801 0.0
gb|CL184021.1|CL184021 104_397_10898570_116_32365_015 Sorgh... 777 0.0
gb|CW251131.1|CW251131 104_713_11223763_148_35058_070 Sorgh... 720 0.0
gb|BG412316.1|BG412316 OV2_40_D10.b1_A002 Ovary 2 (OV2) Sor... 628 e-178
gb|BZ628064.1|BZ628064 ih57f05.b1 WGS-SbicolorF (DH5a methy... 509 e-142
gb|CW232188.1|CW232188 104_681_11211528_148_37350_084 Sorgh... 414 e-114
gb|CD208421.1|CD208421 HS1_37_D10.g1_A012 Heat-shocked seed... 341 6e-092
gb|CL184020.1|CL184020 104_397_10898570_114_32361_015 Sorgh... 178 5e-043
gb|CF431317.1|CF431317 NIT1_5_H09.g1_A002 Nitrogen-deficien... 92 1e-016
gb|CW251130.1|CW251130 104_713_11223763_116_35062_070 Sorgh... 74 2e-011
gb|CW441258.1|CW441258 fsbb001f160f06f0 Sorghum methylation... 64 2e-008
gb|AW923974.1|AW923974 WS1_31_A04.b1_A002 Water-stressed 1 ... 64 2e-008
gb|CW160198.1|CW160198 104_566_11149755_148_36427_006 Sorgh... 58 1e-006
gb|BZ342102.1|BZ342102 ic80e09.b1 WGS-SbicolorF (JM107 adap... 52 8e-005
gb|CW160197.1|CW160197 104_566_11149755_116_36428_006 Sorgh... 52 8e-005
>gb|CN142825.1|CN142825 WOUND1_12_B08.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_12_B08_A002 5', mRNA sequence
Length = 762
Score = 827 bits (417), Expect = 0.0
Identities = 585/639 (91%), Gaps = 9/639 (1%)
Strand = Plus / Plus
Query: 195 tggttccgcgccttggccgcgc------gggttggatccgagctc--cgtgcagcagctc 246
|||||||||||||||||||||| |||| |||||||||||| |||| || ||| |
Sbjct: 92 tggttccgcgccttggccgcgcctgcgcgggtcggatccgagctctccgtggagaagcgc 151
Query: 247 cgccgcgatacgtatcgcataggattccactggatccagctgctgaacggggtaccagaa 306
|||||||||||||||| | |||||||||||||||| |||||||||||| ||| || |||
Sbjct: 152 cgccgcgatacgtatcacgtaggattccactggattcagctgctgaacagggcacgggaa 211
Query: 307 ggtggatttggtagtagcactgaacagcgagtggaatttctctaatactgtccaggatca 366
|||||| ||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 212 ggtggaattgatagtagcactgaacagcaagtggaaattctcaaatactgtccaggatca 271
Query: 367 tggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatg 426
||| |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 272 tggcctctctttgtgatttctgtgggaaacaaaggtcaatgatctactgcagatcagatg 331
Query: 427 cggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggc 486
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 332 cggcatcattgtgcttatcatgcgaccgtaatgttcattcagctaatgcgctgtctcggc 391
Query: 487 gtcatagaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtc 546
|||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 392 gtcatacaaggacccttctttgtgatcgctgtggttctcagcctgcatcagtcagatgtc 451
Query: 547 ttgaggacaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcag 606
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttgaggacaatgcatcactttgccaaaactgtgattggaatgggcatgatgcagcatcag 511
Query: 607 gggcttctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcag 666
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 512 gggcttctgggcataaaaggcaggctataaactgttactcagggtgcccatcatcagcag 571
Query: 667 agctttcgagaatctggtcatttattaccgatatcccgactgtagcagctgagcccaact 726
||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct: 572 agctttcaagaatctggtcatttattatggatatcccgactgtacctgctgagcccaact 631
Query: 727 atgaggatggactaagcatgatgacaattgatgacaagtgatgtgactaatcatcacggt 786
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||| | |
Sbjct: 632 gtgaggatggattaagcatgatgacaattgatgac-agcgatgtgactaatcatcatgat 690
Query: 787 gcttcagatgataaacgattgttggaaatagctaacaca 825
||||||||||||||| || ||||||||||||||||||||
Sbjct: 691 gcttcagatgataaaagactgttggaaatagctaacaca 729
Score = 44.1 bits (22), Expect = 0.020
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 142 gcggcaacagcgaaagcttctcggtctctc 171
|||||||| |||||||||||||| ||||||
Sbjct: 27 gcggcaactgcgaaagcttctcgatctctc 56
>gb|CN151664.1|CN151664 WOUND1_76_G03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_76_G03_A002 5', mRNA sequence
Length = 807
Score = 827 bits (417), Expect = 0.0
Identities = 585/639 (91%), Gaps = 9/639 (1%)
Strand = Plus / Plus
Query: 195 tggttccgcgccttggccgcgc------gggttggatccgagctc--cgtgcagcagctc 246
|||||||||||||||||||||| |||| |||||||||||| |||| || ||| |
Sbjct: 127 tggttccgcgccttggccgcgcctgcgcgggtcggatccgagctctccgtggagaagcgc 186
Query: 247 cgccgcgatacgtatcgcataggattccactggatccagctgctgaacggggtaccagaa 306
|||||||||||||||| | |||||||||||||||| |||||||||||| ||| || |||
Sbjct: 187 cgccgcgatacgtatcacgtaggattccactggattcagctgctgaacagggcacgggaa 246
Query: 307 ggtggatttggtagtagcactgaacagcgagtggaatttctctaatactgtccaggatca 366
|||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 247 ggtggaattgatagtagcactgaacagcaagtggaatttctcaaatactgtccaggatca 306
Query: 367 tggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatg 426
||| |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 307 tggcctctctttgtgatttctgtgggaaacaaaggtcaatgatctactgcagatcagatg 366
Query: 427 cggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggc 486
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 367 cggcatcattgtgcttatcatgcgaccgtaatgttcattcagctaatgcgctgtctcggc 426
Query: 487 gtcatagaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtc 546
|||||| || |||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 427 gtcatacaacgacccttctttgtgatcgctgtggttctcagcctgcatcagtcagatgtc 486
Query: 547 ttgaggacaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcag 606
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 487 ttgaggacaatgcatcactttgccaaaactgtgattggaatgggcatgatgcaccatcag 546
Query: 607 gggcttctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcag 666
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 547 gggcttctgggcataaaaggcaggctataaactgttactcagggtgcccatcatcagcag 606
Query: 667 agctttcgagaatctggtcatttattaccgatatcccgactgtagcagctgagcccaact 726
||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct: 607 agctttcaagaatctggtcatttattatggatatcccgactgtacctgctgagcccaact 666
Query: 727 atgaggatggactaagcatgatgacaattgatgacaagtgatgtgactaatcatcacggt 786
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct: 667 gtgaggatggattaagcatgatgacaattgatgac-agtgatgtgactaatcatcatgat 725
Query: 787 gcttcagatgataaacgattgttggaaatagctaacaca 825
||||||||||||||| || ||||||||||||||||||||
Sbjct: 726 gcttcagatgataaaagactgttggaaatagctaacaca 764
Score = 54.0 bits (27), Expect = 2e-005
Identities = 40/44 (90%), Gaps = 4/44 (9%)
Strand = Plus / Plus
Query: 80 tggcaaaacctcctcctagtcctc----ctctcgcagaaggagg 119
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tggcaaaacctcctcctagtcctctcggctctcgcagaaggagg 44
Score = 52.0 bits (26), Expect = 8e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 142 gcggcaacagcgaaagcttctcggtctctc 171
||||||||||||||||||||||| ||||||
Sbjct: 62 gcggcaacagcgaaagcttctcgatctctc 91
>gb|CW207479.1|CW207479 104_636_11188164_148_36970_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11188164, DNA
sequence
Length = 649
Score = 801 bits (404), Expect = 0.0
Identities = 522/560 (93%), Gaps = 1/560 (0%)
Strand = Plus / Plus
Query: 266 taggattccactggatccagctgctgaacggggtaccagaaggtggatttggtagtagca 325
|||||||||||||||| |||||||||||| ||| || ||||||||| ||| ||||||||
Sbjct: 37 taggattccactggattcagctgctgaacagggcacgggaaggtggaattgatagtagca 96
Query: 326 ctgaacagcgagtggaatttctctaatactgtccaggatcatggttcctctctgtggttt 385
||||||||| ||||||||||||| |||||||||||||||||||| |||| |||| |||
Sbjct: 97 ctgaacagcaagtggaatttctcaaatactgtccaggatcatggcctctctttgtgattt 156
Query: 386 ctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcatcattgtgcttatc 445
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 157 ctgtgggaaacaaaggtcaatgatctactgcagatcagatgcggcatcattgtgcttatc 216
Query: 446 atgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcatagaaggacccttct 505
||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 217 atgcgaccgtaatgttcattcagctaatgcgctgtctcggcgtcatacaaggacccttct 276
Query: 506 ttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgaggacaacacatcact 565
||||||||| ||||||| ||||||||||||||| |||||||||||||||| |||||||
Sbjct: 277 ttgtgatcgctgtggttctcagcctgcatcagtcagatgtcttgaggacaatgcatcact 336
Query: 566 ttgccaaaactgtgattggaatgggcatgatgcagcatcaggggcttctgggcataaaag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttgccaaaactgtgattggaatgggcatgatgcagcatcaggggcttctgggcataaaag 396
Query: 626 gcaggccataaactgttactcagggtgcccatcatcagcagagctttcgagaatctggtc 685
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 397 gcaggctataaactgttactcagggtgcccatcatcagcagagctttcaagaatctggtc 456
Query: 686 atttattaccgatatcccgactgtagcagctgagcccaactatgaggatggactaagcat 745
|||||||| ||||||||||||||| | ||||||||||||| |||||||||| |||||||
Sbjct: 457 atttattatggatatcccgactgtacctgctgagcccaactgtgaggatggattaagcat 516
Query: 746 gatgacaattgatgacaagtgatgtgactaatcatcacggtgcttcagatgataaacgat 805
|||||||||||||||| |||||||||||||||||||| | |||||||||||||||| ||
Sbjct: 517 gatgacaattgatgac-agtgatgtgactaatcatcatgatgcttcagatgataaaagac 575
Query: 806 tgttggaaatagctaacaca 825
||||||||||||||||||||
Sbjct: 576 tgttggaaatagctaacaca 595
>gb|CL184021.1|CL184021 104_397_10898570_116_32365_015 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898570, DNA
sequence
Length = 674
Score = 777 bits (392), Expect = 0.0
Identities = 510/548 (93%), Gaps = 1/548 (0%)
Strand = Plus / Plus
Query: 266 taggattccactggatccagctgctgaacggggtaccagaaggtggatttggtagtagca 325
|||||||||||||||| |||||||||||| ||| || ||||||||| ||| ||||||||
Sbjct: 128 taggattccactggattcagctgctgaacagggcacgggaaggtggaattgatagtagca 187
Query: 326 ctgaacagcgagtggaatttctctaatactgtccaggatcatggttcctctctgtggttt 385
||||||||| ||||||||||||| |||||||||||||||||||| |||| |||| |||
Sbjct: 188 ctgaacagcaagtggaatttctcaaatactgtccaggatcatggcctctctttgtgattt 247
Query: 386 ctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcatcattgtgcttatc 445
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 248 ctgtgggaaacaaaggtcaatgatctactgcagatcagatgcggcatcattgtgcttatc 307
Query: 446 atgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcatagaaggacccttct 505
||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 308 atgcgaccgtaatgttcattcagctaatgcgctgtctcggcgtcatacaaggacccttct 367
Query: 506 ttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgaggacaacacatcact 565
||||||||| ||||||| ||||||||||||||| |||||||||||||||| |||||||
Sbjct: 368 ttgtgatcgctgtggttctcagcctgcatcagtcagatgtcttgaggacaatgcatcact 427
Query: 566 ttgccaaaactgtgattggaatgggcatgatgcagcatcaggggcttctgggcataaaag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttgccaaaactgtgattggaatgggcatgatgcagcatcaggggcttctgggcataaaag 487
Query: 626 gcaggccataaactgttactcagggtgcccatcatcagcagagctttcgagaatctggtc 685
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 488 gcaggctataaactgttactcagggtgcccatcatcagcagagctttcaagaatctggtc 547
Query: 686 atttattaccgatatcccgactgtagcagctgagcccaactatgaggatggactaagcat 745
|||||||| ||||||||||||||| | ||||||||||||| |||||||||| |||||||
Sbjct: 548 atttattatggatatcccgactgtacctgctgagcccaactgtgaggatggattaagcat 607
Query: 746 gatgacaattgatgacaagtgatgtgactaatcatcacggtgcttcagatgataaacgat 805
|||||||||||||||| |||||||||||||||||||| | |||||||||||||||| ||
Sbjct: 608 gatgacaattgatgac-agtgatgtgactaatcatcatgatgcttcagatgataaaagac 666
Query: 806 tgttggaa 813
||||||||
Sbjct: 667 tgttggaa 674
>gb|CW251131.1|CW251131 104_713_11223763_148_35058_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223763, DNA
sequence
Length = 703
Score = 720 bits (363), Expect = 0.0
Identities = 487/523 (93%), Gaps = 4/523 (0%)
Strand = Plus / Minus
Query: 304 gaaggtggatttggtagtagcactgaacagcgagtggaatttctctaatactgtcc-agg 362
||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct: 703 gaaggtggaattgatagtagcactgaacagcacgtggaatttctc-aatactgtcccagg 645
Query: 363 atcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcg 422
||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 644 atcatggcctctctttgtgatttctgtgg-aaacaaaggtcaatgatctactgcagatca 586
Query: 423 gatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtct 482
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 585 gatgcggcatcattgtgcttatcatgcgaccgtaatgttcattcagctaatgcgctgtct 526
Query: 483 cggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccga 542
|||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct: 525 cggcgtcatacaaggacccttctttgtgatcgctgtggttctcagcctgcatcagtcaga 466
Query: 543 tgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggcatgatgcagca 602
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgtcttgaggacaatgcatcactttgccaaaactgtgattggaatgggcatgatgcagca 406
Query: 603 tcaggggcttctgggcataaaaggcaggccataaactgttactcagggtgcccatcatca 662
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 405 tcaggggcttctgggcataaaaggcaggctataaactgttactcagggtgcccatcatca 346
Query: 663 gcagagctttcgagaatctggtcatttattaccgatatcccgactgtagcagctgagccc 722
||||||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct: 345 gcagagctttcaagaatctggtcatttattatggatatcccgactgtacctgctgagccc 286
Query: 723 aactatgaggatggactaagcatgatgacaattgatgacaagtgatgtgactaatcatca 782
|||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 285 aactgtgaggatggattaagcatgatgacaattgatgac-agtgatgtgactaatcatca 227
Query: 783 cggtgcttcagatgataaacgattgttggaaatagctaacaca 825
| |||||||||||||||| || ||||||||||||||||||||
Sbjct: 226 tgatgcttcagatgataaaagactgttggaaatagctaacaca 184
>gb|BG412316.1|BG412316 OV2_40_D10.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 559
Score = 628 bits (317), Expect = e-178
Identities = 439/479 (91%), Gaps = 8/479 (1%)
Strand = Plus / Plus
Query: 195 tggttccgcgccttggccgcgc------gggttggatccgagctc--cgtgcagcagctc 246
|||||||||||||||||||||| |||| |||||||||||| |||| || ||| |
Sbjct: 81 tggttccgcgccttggccgcgcctgcgcgggtcggatccgagctctccgtggagaagcgc 140
Query: 247 cgccgcgatacgtatcgcataggattccactggatccagctgctgaacggggtaccagaa 306
|||||||||||||||| | |||||||||||||||| |||||||||||| ||| || |||
Sbjct: 141 cgccgcgatacgtatcacgtaggattccactggattcagctgctgaacagggcacgggaa 200
Query: 307 ggtggatttggtagtagcactgaacagcgagtggaatttctctaatactgtccaggatca 366
|||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 201 ggtggaattgatagtagcactgaacagcaagtggaatttctcaaatactgtccaggatca 260
Query: 367 tggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatg 426
||| |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tggcctctctttgtgatttctgtgggaaacaaaggtcaatgatctactgcagatcagatg 320
Query: 427 cggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggc 486
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 321 cggcatcattgtgcttatcatgcgaccgtaatgttcattcagctaatgcgctgtctcggc 380
Query: 487 gtcatagaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtc 546
|||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 381 gtcatacaaggacccttctttgtgatcgctgtggttctcagcctgcatcagtcagatgtc 440
Query: 547 ttgaggacaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcag 606
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaggacaatgcatcactttgccaaaactgtgattggaatgggcatgatgcagcatcag 500
Query: 607 gggcttctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagca 665
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 gggcttctgggcataaaaggcaggctataaactgttactcagggtgcccatcatcagca 559
Score = 52.0 bits (26), Expect = 8e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 142 gcggcaacagcgaaagcttctcggtctctc 171
||||||||||||||||||||||| ||||||
Sbjct: 16 gcggcaacagcgaaagcttctcgatctctc 45
>gb|BZ628064.1|BZ628064 ih57f05.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih57f05 5', DNA sequence
Length = 451
Score = 509 bits (257), Expect = e-142
Identities = 360/393 (91%), Gaps = 1/393 (0%)
Strand = Plus / Plus
Query: 266 taggattccactggatccagctgctgaacggggtaccagaaggtggatttggtagtagca 325
|||||||||||||||| |||||||||||| ||| || ||||||||| ||| ||||||||
Sbjct: 59 taggattccactggattcagctgctgaacagggcacgggaaggtggaattgatagtagca 118
Query: 326 ctgaacagcgagtggaatttctctaatactgtccaggatcatggttcctctctgtggttt 385
||||||||| || |||||||||| |||||||||||||||||||| |||| |||| |||
Sbjct: 119 ctgaacagcaagcggaatttctcaaatactgtccaggatcatggcctctctttgtgattt 178
Query: 386 ctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcatcattgtgcttatc 445
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 179 ctgtgggaaacaaaggtcaatgatctactgcagatcagatgcggcatcattgtgcttatc 238
Query: 446 atgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcatagaaggacccttct 505
||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 239 atgcgaccgtaatgttcattcagctaatgcgctgtctcggcgtcatacaaggacccttct 298
Query: 506 ttgtgat-cgttgtggtttacagcctgcatcagtccgatgtcttgaggacaacacatcac 564
||||||| | || || | ||||||||||||||| |||||||||||||||| ||||||
Sbjct: 299 ttgtgatcccctgcggctctcagcctgcatcagtcagatgtcttgaggacaatgcatcac 358
Query: 565 tttgccaaaactgtgattggaatgggcatgatgcagcatcaggggcttctgggcataaaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tttgccaaaactgtgattggaatgggcatgatgcagcatcaggggcttctgggcataaaa 418
Query: 625 ggcaggccataaactgttactcagggtgcccat 657
|| |||| ||||||||||||||| |||||||||
Sbjct: 419 ggaaggctataaactgttactcaaggtgcccat 451
>gb|CW232188.1|CW232188 104_681_11211528_148_37350_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211528, DNA
sequence
Length = 712
Score = 414 bits (209), Expect = e-114
Identities = 252/265 (95%), Gaps = 1/265 (0%)
Strand = Plus / Plus
Query: 561 tcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggcttctgggcat 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggcttctgggcat 60
Query: 621 aaaaggcaggccataaactgttactcagggtgcccatcatcagcagagctttcgagaatc 680
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 61 aaaaggcaggctataaactgttactcagggtgcccatcatcagcagagctttcaagaatc 120
Query: 681 tggtcatttattaccgatatcccgactgtagcagctgagcccaactatgaggatggacta 740
||||||||||||| ||||||||||||||| | ||||||||||||| |||||||||| ||
Sbjct: 121 tggtcatttattatggatatcccgactgtacctgctgagcccaactgtgaggatggatta 180
Query: 741 agcatgatgacaattgatgacaagtgatgtgactaatcatcacggtgcttcagatgataa 800
||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct: 181 agcatgatgacaattgatgac-agtgatgtgactaatcatcatgatgcttcagatgataa 239
Query: 801 acgattgttggaaatagctaacaca 825
| || ||||||||||||||||||||
Sbjct: 240 aagactgttggaaatagctaacaca 264
>gb|CD208421.1|CD208421 HS1_37_D10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_37_D10_A012 5', mRNA sequence
Length = 553
Score = 341 bits (172), Expect = 6e-092
Identities = 273/306 (89%), Gaps = 8/306 (2%)
Strand = Plus / Plus
Query: 195 tggttccgcgccttggccgcgc------gggttggatccgagctc--cgtgcagcagctc 246
|||||||||||||||||||||| |||| |||||||||||| |||| || ||| |
Sbjct: 247 tggttccgcgccttggccgcgcctgcgcgggtcggatccgagctctccgtggagaagcgc 306
Query: 247 cgccgcgatacgtatcgcataggattccactggatccagctgctgaacggggtaccagaa 306
|||||||||||||||| | |||||||||||||||| |||||||||||| ||| || |||
Sbjct: 307 cgccgcgatacgtatcacgtaggattccactggattcagctgctgaacagggcacgggaa 366
Query: 307 ggtggatttggtagtagcactgaacagcgagtggaatttctctaatactgtccaggatca 366
|||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 367 ggtggaattgatagtagcactgaacagcaagtggaatttctcaaatactgtccaggatca 426
Query: 367 tggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatg 426
||| |||| || | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 427 tggcctctctttgggatttctgtgggaaacaaaggtcaatgatctactgcagatcagatg 486
Query: 427 cggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggc 486
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 487 cggcatcattgtgcttatcatgcgaccgtaatgttcattcagctaatgcgctgtctcggc 546
Query: 487 gtcata 492
||||||
Sbjct: 547 gtcata 552
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/67 (88%), Gaps = 7/67 (10%)
Strand = Plus / Plus
Query: 57 ccgacccctgctcgacgacgtgctggcaaaacctcctcctagtcctc----ctctcgcag 112
||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct: 101 ccgacccctgctcgacg---tgttggcaaaacctcctcctagtcctctcggctctcgcag 157
Query: 113 aaggagg 119
|||||||
Sbjct: 158 aaggagg 164
Score = 52.0 bits (26), Expect = 8e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 142 gcggcaacagcgaaagcttctcggtctctc 171
||||||||||||||||||||||| ||||||
Sbjct: 182 gcggcaacagcgaaagcttctcgatctctc 211
>gb|CL184020.1|CL184020 104_397_10898570_114_32361_015 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898570, DNA
sequence
Length = 666
Score = 178 bits (90), Expect = 5e-043
Identities = 121/130 (93%), Gaps = 1/130 (0%)
Strand = Plus / Minus
Query: 696 gatatcccgactgtagcagctgagcccaactatgaggatggactaagcatgatgacaatt 755
||||||||||||||| | ||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 662 gatatcccgactgtacctgctgagcccaactgtgaggatggattaagcatgatgacaatt 603
Query: 756 gatgacaagtgatgtgactaatcatcacggtgcttcagatgataaacgattgttggaaat 815
|||||| |||||||||||||||||||| | |||||||||||||||| || ||||||||||
Sbjct: 602 gatgac-agtgatgtgactaatcatcatgatgcttcagatgataaaagactgttggaaat 544
Query: 816 agctaacaca 825
||||||||||
Sbjct: 543 agctaacaca 534
>gb|CF431317.1|CF431317 NIT1_5_H09.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_5_H09_A002 5', mRNA sequence
Length = 299
Score = 91.7 bits (46), Expect = 1e-016
Identities = 93/108 (86%), Gaps = 8/108 (7%)
Strand = Plus / Plus
Query: 195 tggttccgcgccttggccgcgc------gggttggatccgagctc--cgtgcagcagctc 246
|||||||||||||||||||||| |||| |||||||||||| |||| || ||| |
Sbjct: 183 tggttccgcgccttggccgcgcctgcgcgggtcggatccgagctctccgtggagaagcgc 242
Query: 247 cgccgcgatacgtatcgcataggattccactggatccagctgctgaac 294
|||||||||||||||| | |||||||||||||||| ||||||||||||
Sbjct: 243 cgccgcgatacgtatcacgtaggattccactggattcagctgctgaac 290
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/67 (88%), Gaps = 7/67 (10%)
Strand = Plus / Plus
Query: 57 ccgacccctgctcgacgacgtgctggcaaaacctcctcctagtcctc----ctctcgcag 112
||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct: 37 ccgacccctgctcgacg---tgttggcaaaacctcctcctagtcctctcggctctcgcag 93
Query: 113 aaggagg 119
|||||||
Sbjct: 94 aaggagg 100
Score = 52.0 bits (26), Expect = 8e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 142 gcggcaacagcgaaagcttctcggtctctc 171
||||||||||||||||||||||| ||||||
Sbjct: 118 gcggcaacagcgaaagcttctcgatctctc 147
>gb|CW251130.1|CW251130 104_713_11223763_116_35062_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223763, DNA
sequence
Length = 654
Score = 73.8 bits (37), Expect = 2e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 266 taggattccactggatccagctgctgaacggggtaccagaaggtggatttggtagtagca 325
|||||||||||||||| ||||||||| || ||| || ||||||||| ||| ||||||||
Sbjct: 585 taggattccactggattcagctgctgcacagggcacgggaaggtggaattgatagtagca 644
Query: 326 ctgaacagc 334
|||||||||
Sbjct: 645 ctgaacagc 653
>gb|CW441258.1|CW441258 fsbb001f160f06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f160f06, DNA
sequence
Length = 547
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/67 (88%), Gaps = 7/67 (10%)
Strand = Plus / Plus
Query: 57 ccgacccctgctcgacgacgtgctggcaaaacctcctcctagtcctc----ctctcgcag 112
||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct: 145 ccgacccctgctcgacg---tgttggcaaaacctcctcctagtcctctcggctctcgcag 201
Query: 113 aaggagg 119
|||||||
Sbjct: 202 aaggagg 208
Score = 52.0 bits (26), Expect = 8e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 142 gcggcaacagcgaaagcttctcggtctctc 171
||||||||||||||||||||||| ||||||
Sbjct: 226 gcggcaacagcgaaagcttctcgatctctc 255
Score = 44.1 bits (22), Expect = 0.020
Identities = 60/72 (83%), Gaps = 8/72 (11%)
Strand = Plus / Plus
Query: 195 tggttccgcgccttggccgcgc------gggttggatccgag--ctccgtgcagcagctc 246
|||||||||||||||||||||| |||| ||||||||| ||||||| || ||| |
Sbjct: 291 tggttccgcgccttggccgcgcctgcgcgggtcggatccgagctctccgtggagaagcgc 350
Query: 247 cgccgcgatacg 258
||||||||||||
Sbjct: 351 cgccgcgatacg 362
>gb|AW923974.1|AW923974 WS1_31_A04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 503
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/67 (88%), Gaps = 7/67 (10%)
Strand = Plus / Plus
Query: 57 ccgacccctgctcgacgacgtgctggcaaaacctcctcctagtcctc----ctctcgcag 112
||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct: 3 ccgacccctgctcgacg---tgttggcaaaacctcctcctagtcctctcggctctcgcag 59
Query: 113 aaggagg 119
|||||||
Sbjct: 60 aaggagg 66
Score = 52.0 bits (26), Expect = 8e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 142 gcggcaacagcgaaagcttctcggtctctc 171
||||||||||||||||||||||| ||||||
Sbjct: 84 gcggcaacagcgaaagcttctcgatctctc 113
>gb|CW160198.1|CW160198 104_566_11149755_148_36427_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149755, DNA
sequence
Length = 654
Score = 58.0 bits (29), Expect = 1e-006
Identities = 43/47 (91%), Gaps = 3/47 (6%)
Strand = Plus / Plus
Query: 57 ccgacccctgctcgacgacgtgctggcaaaacctcctcctagtcctc 103
||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 600 ccgacccctgctcgacg---tgttggcaaaacctcctcctagtcctc 643
>gb|BZ342102.1|BZ342102 ic80e09.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic80e09 5', DNA sequence
Length = 588
Score = 52.0 bits (26), Expect = 8e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 142 gcggcaacagcgaaagcttctcggtctctc 171
||||||||||||||||||||||| ||||||
Sbjct: 55 gcggcaacagcgaaagcttctcgatctctc 84
Score = 44.1 bits (22), Expect = 0.020
Identities = 60/72 (83%), Gaps = 8/72 (11%)
Strand = Plus / Plus
Query: 195 tggttccgcgccttggccgcgc------gggttggatccgag--ctccgtgcagcagctc 246
|||||||||||||||||||||| |||| ||||||||| ||||||| || ||| |
Sbjct: 120 tggttccgcgccttggccgcgcctgcgcgggtcggatccgagctctccgtggagaagcgc 179
Query: 247 cgccgcgatacg 258
||||||||||||
Sbjct: 180 cgccgcgatacg 191
Score = 40.1 bits (20), Expect = 0.32
Identities = 33/37 (89%), Gaps = 4/37 (10%)
Strand = Plus / Plus
Query: 87 acctcctcctagtcctc----ctctcgcagaaggagg 119
||||||||||||||||| ||||||||||||||||
Sbjct: 1 acctcctcctagtcctctcggctctcgcagaaggagg 37
>gb|CW160197.1|CW160197 104_566_11149755_116_36428_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149755, DNA
sequence
Length = 651
Score = 52.0 bits (26), Expect = 8e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 142 gcggcaacagcgaaagcttctcggtctctc 171
||||||||||||||||||||||| ||||||
Sbjct: 624 gcggcaacagcgaaagcttctcgatctctc 595
Score = 44.1 bits (22), Expect = 0.020
Identities = 60/72 (83%), Gaps = 8/72 (11%)
Strand = Plus / Minus
Query: 195 tggttccgcgccttggccgcgc------gggttggatccgag--ctccgtgcagcagctc 246
|||||||||||||||||||||| |||| ||||||||| ||||||| || ||| |
Sbjct: 559 tggttccgcgccttggccgcgcctgcgcgggtcggatccgagctctccgtggagaagcgc 500
Query: 247 cgccgcgatacg 258
||||||||||||
Sbjct: 499 cgccgcgatacg 488
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 212,459
Number of Sequences: 832831
Number of extensions: 212459
Number of successful extensions: 64967
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64886
Number of HSP's gapped (non-prelim): 53
length of query: 825
length of database: 491,359,669
effective HSP length: 20
effective length of query: 805
effective length of database: 474,703,049
effective search space: 382135954445
effective search space used: 382135954445
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)