BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8028975.2.1
(595 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM328210.1|BM328210 PIC1_22_D06.g1_A002 Pathogen-infecte... 533 e-150
gb|BM331709.1|BM331709 PIC1_59_F10.g1_A002 Pathogen-infecte... 533 e-150
gb|CB924981.1|CB924981 ABA1_29_B09.b1_A012 Abscisic acid-tr... 533 e-150
gb|CD210978.1|CD210978 HS1_58_H07.b1_A012 Heat-shocked seed... 533 e-150
gb|CF428452.1|CF428452 PH1_15_C10.b1_A002 Phosphorous-defic... 414 e-114
gb|BM329289.1|BM329289 PIC1_35_G09.g1_A002 Pathogen-infecte... 375 e-102
gb|AI724629.1|AI724629 RHIZ1_11_A04.y1_A001 Rhizome1 (RHIZ1... 216 2e-054
gb|BM328262.1|BM328262 PIC1_23_A04.g1_A002 Pathogen-infecte... 216 2e-054
gb|BM329205.1|BM329205 PIC1_34_G04.g1_A002 Pathogen-infecte... 186 2e-045
gb|CW178060.1|CW178060 104_591_11159361_116_36611_037 Sorgh... 182 2e-044
gb|CD223826.1|CD223826 CCC1_30_C12.b1_A007 Callus culture/c... 161 9e-038
gb|CF431305.1|CF431305 NIT1_5_F06.b1_A002 Nitrogen-deficien... 159 4e-037
gb|CW185874.1|CW185874 104_603_11166274_148_36703_037 Sorgh... 147 1e-033
gb|BZ412929.1|BZ412929 232a8_13 Subclones from BAC clones m... 86 4e-015
>gb|BM328210.1|BM328210 PIC1_22_D06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 629
Score = 533 bits (269), Expect = e-150
Identities = 328/347 (94%), Gaps = 3/347 (0%)
Strand = Plus / Plus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 2 gcagtatgtggggattgaagtctggcaggtcaaagctggttcggtttttgacaacatttt 61
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gatttgcgatgatccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 121
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 122 ggaggctgaaaaagaggcctttgaaggagctgaaaggaagaggaaggctagagaagaaga 181
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ggaagcacggcgagcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 241
Query: 241 cggcagggaccgatacaaggatagatataagcgtcataggcactacgactaccatgacga 300
||||||||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 242 tggcagggaccgttacagggatagatataagcgccatagacactacgactaccatgacga 301
Query: 301 gctatagatcctgtattcttttgaaatctgcacgatattggatgtct 347
|||||||||| || | |||||||||||||||| |||||| |||||
Sbjct: 302 gctatagatcatg---tgttttgaaatctgcacgttattggttgtct 345
Score = 147 bits (74), Expect = 1e-033
Identities = 114/126 (90%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 362 cacgtgcaaaacttgtatgttgtactcacggatgaagctgaacctgtgatttt-ggcgat 420
|||||||| |||||||||||||||| |||| || |||||||| ||||||||| ||||||
Sbjct: 453 cacgtgcagaacttgtatgttgtacacacgaatcaagctgaatttgtgatttttggcgat 512
Query: 421 gggtagagattggccatcgcgtctgtaactaaatttccacgttgcgatgcaatatgagct 480
|||||||||||| |||||||| |||||||||||||||| | |||||| ||||||||||||
Sbjct: 513 gggtagagattgaccatcgcggctgtaactaaatttccccattgcgaggcaatatgagct 572
Query: 481 gtagta 486
||||||
Sbjct: 573 gtagta 578
>gb|BM331709.1|BM331709 PIC1_59_F10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 622
Score = 533 bits (269), Expect = e-150
Identities = 328/347 (94%), Gaps = 3/347 (0%)
Strand = Plus / Plus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 36 gcagtatgtggggattgaagtctggcaggtcaaagctggttcggtttttgacaacatttt 95
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gatttgcgatgatccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 155
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 156 ggaggctgaaaaagaggcctttgaaggagctgaaaggaagaggaaggctagagaagaaga 215
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggaagcacggcgagcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 275
Query: 241 cggcagggaccgatacaaggatagatataagcgtcataggcactacgactaccatgacga 300
||||||||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 276 tggcagggaccgttacagggatagatataagcgccatagacactacgactaccatgacga 335
Query: 301 gctatagatcctgtattcttttgaaatctgcacgatattggatgtct 347
|||||||||| || | |||||||||||||||| |||||| |||||
Sbjct: 336 gctatagatcatg---tgttttgaaatctgcacgttattggttgtct 379
Score = 147 bits (74), Expect = 1e-033
Identities = 114/126 (90%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 362 cacgtgcaaaacttgtatgttgtactcacggatgaagctgaacctgtgatttt-ggcgat 420
|||||||| |||||||||||||||| |||| || |||||||| ||||||||| ||||||
Sbjct: 487 cacgtgcagaacttgtatgttgtacacacgaatcaagctgaatttgtgatttttggcgat 546
Query: 421 gggtagagattggccatcgcgtctgtaactaaatttccacgttgcgatgcaatatgagct 480
|||||||||||| |||||||| |||||||||||||||| | |||||| ||||||||||||
Sbjct: 547 gggtagagattgaccatcgcggctgtaactaaatttccccattgcgaggcaatatgagct 606
Query: 481 gtagta 486
||||||
Sbjct: 607 gtagta 612
>gb|CB924981.1|CB924981 ABA1_29_B09.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_29_B09_A012 3', mRNA sequence
Length = 663
Score = 533 bits (269), Expect = e-150
Identities = 328/347 (94%), Gaps = 3/347 (0%)
Strand = Plus / Plus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 78 gcagtatgtggggattgaagtctggcaggtcaaagctggttcggtttttgacaacatttt 137
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gatttgcgatgatccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 197
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 198 ggaggctgaaaaagaggcctttgaaggagctgaaaggaagaggaaggctagagaagaaga 257
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggaagcacggcgagcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 317
Query: 241 cggcagggaccgatacaaggatagatataagcgtcataggcactacgactaccatgacga 300
||||||||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 318 tggcagggaccgttacagggatagatataagcgccatagacactacgactaccatgacga 377
Query: 301 gctatagatcctgtattcttttgaaatctgcacgatattggatgtct 347
|||||||||| || | |||||||||||||||| |||||| |||||
Sbjct: 378 gctatagatcatg---tgttttgaaatctgcacgttattggttgtct 421
Score = 145 bits (73), Expect = 5e-033
Identities = 113/125 (90%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 362 cacgtgcaaaacttgtatgttgtactcacggatgaagctgaacctgtgatttt-ggcgat 420
|||||||| |||||||||||||||| |||| || |||||||| ||||||||| ||||||
Sbjct: 529 cacgtgcagaacttgtatgttgtacacacgaatcaagctgaatttgtgatttttggcgat 588
Query: 421 gggtagagattggccatcgcgtctgtaactaaatttccacgttgcgatgcaatatgagct 480
|||||||||||| |||||||| |||||||||||||||| | |||||| ||||||||||||
Sbjct: 589 gggtagagattgaccatcgcggctgtaactaaatttccccattgcgaggcaatatgagct 648
Query: 481 gtagt 485
|||||
Sbjct: 649 gtagt 653
>gb|CD210978.1|CD210978 HS1_58_H07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_H07_A012 3', mRNA sequence
Length = 737
Score = 533 bits (269), Expect = e-150
Identities = 328/347 (94%), Gaps = 3/347 (0%)
Strand = Plus / Plus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 202 gcagtatgtggggattgaagtctggcaggtcaaagctggttcggtttttgacaacatttt 261
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatttgcgatgatccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 321
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 322 ggaggctgaaaaagaggcctttgaaggagctgaaaggaagaggaaggctagagaagaaga 381
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggaagcacggcgagcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 441
Query: 241 cggcagggaccgatacaaggatagatataagcgtcataggcactacgactaccatgacga 300
||||||||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 442 tggcagggaccgttacagggatagatataagcgccatagacactacgactaccatgacga 501
Query: 301 gctatagatcctgtattcttttgaaatctgcacgatattggatgtct 347
|||||||||| || | |||||||||||||||| |||||| |||||
Sbjct: 502 gctatagatcatg---tgttttgaaatctgcacgttattggttgtct 545
Score = 89.7 bits (45), Expect = 3e-016
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 362 cacgtgcaaaacttgtatgttgtactcacggatgaagctgaacctgtga-ttttggcgat 420
|||||||| |||||||||||||||| |||| || |||||||| ||||| ||||||||||
Sbjct: 653 cacgtgcagaacttgtatgttgtacacacgaatcaagctgaatttgtgatttttggcgat 712
Query: 421 gggtagagattggccatcgcg 441
|||||||||||| ||||||||
Sbjct: 713 gggtagagattgaccatcgcg 733
>gb|CF428452.1|CF428452 PH1_15_C10.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_15_C10_A002 3', mRNA sequence
Length = 551
Score = 414 bits (209), Expect = e-114
Identities = 262/279 (93%), Gaps = 3/279 (1%)
Strand = Plus / Plus
Query: 69 atgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctg 128
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgatccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctg 60
Query: 129 aaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagcac 188
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 61 aaaaagaggcctttgaaggagctgaaaggaagaggaaggctagagaagaagaggaagcac 120
Query: 189 ggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccgcggcaggg 248
|| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 121 ggcgagcacgggaggaaggggagagacgaaggcgggagagggatagggaccgtggcaggg 180
Query: 249 accgatacaaggatagatataagcgtcataggcactacgactaccatgacgagctataga 308
|||| |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 181 accgttacagggatagatataagcgccatagacactacgactaccatgacgagctataga 240
Query: 309 tcctgtattcttttgaaatctgcacgatattggatgtct 347
|| || | |||||||||||||||| |||||| |||||
Sbjct: 241 tcatg---tgttttgaaatctgcacgttattggttgtct 276
Score = 147 bits (74), Expect = 1e-033
Identities = 114/126 (90%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 362 cacgtgcaaaacttgtatgttgtactcacggatgaagctgaacctgtgatttt-ggcgat 420
|||||||| |||||||||||||||| |||| || |||||||| ||||||||| ||||||
Sbjct: 384 cacgtgcagaacttgtatgttgtacacacgaatcaagctgaatttgtgatttttggcgat 443
Query: 421 gggtagagattggccatcgcgtctgtaactaaatttccacgttgcgatgcaatatgagct 480
|||||||||||| |||||||| |||||||||||||||| | |||||| ||||||||||||
Sbjct: 444 gggtagagattgaccatcgcggctgtaactaaatttccccattgcgaggcaatatgagct 503
Query: 481 gtagta 486
||||||
Sbjct: 504 gtagta 509
>gb|BM329289.1|BM329289 PIC1_35_G09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 654
Score = 375 bits (189), Expect = e-102
Identities = 242/259 (93%), Gaps = 3/259 (1%)
Strand = Plus / Plus
Query: 89 catgttgtagatgaaacttttgctgcaaataaggaggctgaaaaggaggcctttgaagga 148
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 catgttgtagatgaaacttctgctgcaaataaggaggctgaaaaagaggcctttgaagga 60
Query: 149 gctgaaagaaagaggaaggctagagaagaagaggaagcacggagggcacgggaggaaggg 208
|||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 61 gctgaaaggaagaggaaggctagagaagaagaggaagcacggcgagcacgggaggaaggg 120
Query: 209 gagagacgaaggcgggagagggatagggaccgcggcagggaccgatacaaggatagatat 268
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct: 121 gagagacgaaggcgggagagggatagggaccgtggcagggaccgttacagggatagatat 180
Query: 269 aagcgtcataggcactacgactaccatgacgagctatagatcctgtattcttttgaaatc 328
||||| ||||| |||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 181 aagcgccatagacactacgactaccatgacgagctatagatcatg---tgttttgaaatc 237
Query: 329 tgcacgatattggatgtct 347
|||||| |||||| |||||
Sbjct: 238 tgcacgttattggttgtct 256
Score = 147 bits (74), Expect = 1e-033
Identities = 114/126 (90%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 362 cacgtgcaaaacttgtatgttgtactcacggatgaagctgaacctgtgatttt-ggcgat 420
|||||||| |||||||||||||||| |||| || |||||||| ||||||||| ||||||
Sbjct: 364 cacgtgcagaacttgtatgttgtacacacgaatcaagctgaatttgtgatttttggcgat 423
Query: 421 gggtagagattggccatcgcgtctgtaactaaatttccacgttgcgatgcaatatgagct 480
|||||||||||| |||||||| |||||||||||||||| | |||||| ||||||||||||
Sbjct: 424 gggtagagattgaccatcgcggctgtaactaaatttccccattgcgaggcaatatgagct 483
Query: 481 gtagta 486
||||||
Sbjct: 484 gtagta 489
>gb|AI724629.1|AI724629 RHIZ1_11_A04.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 422
Score = 216 bits (109), Expect = 2e-054
Identities = 150/163 (92%), Gaps = 3/163 (1%)
Strand = Plus / Plus
Query: 185 gcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccgcggc 244
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8 gcacggcgagcacgggaggaaggggagagacgaaggcgggagagggatagggaccgtggc 67
Query: 245 agggaccgatacaaggatagatataagcgtcataggcactacgactaccatgacgagcta 304
|||||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 68 agggaccgttacagggatagatataagcgccatagacactacgactaccatgacgagcta 127
Query: 305 tagatcctgtattcttttgaaatctgcacgatattggatgtct 347
|||||| || ||||||||||||||||||| ||||| |||||
Sbjct: 128 tagatcatg---tcttttgaaatctgcacgacattggttgtct 167
Score = 119 bits (60), Expect = 3e-025
Identities = 100/112 (89%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 362 cacgtgcaaaacttgtatgttgtactcacggatgaagctgaacctgtgatttt-ggcgat 420
|||||||| |||||||||||||||| |||| || |||||||| ||||||||| ||||||
Sbjct: 275 cacgtgcagaacttgtatgttgtacacacgaatcaagctgaatttgtgatttttggcgat 334
Query: 421 gggtagagattggccatcgcgtctgtaactaaatttccacgttgcgatgcaa 472
|||||||||||| |||||||| ||||||||||||||| | |||||||||||
Sbjct: 335 gggtagagattgaccatcgcggctgtaactaaatttctccattgcgatgcaa 386
>gb|BM328262.1|BM328262 PIC1_23_A04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 410
Score = 216 bits (109), Expect = 2e-054
Identities = 155/170 (91%), Gaps = 3/170 (1%)
Strand = Plus / Plus
Query: 178 agaggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggataggga 237
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agangaagcacggcgagcacgggaggaaggggagagacgaaggcgggagagggataggga 60
Query: 238 ccgcggcagggaccgatacaaggatagatataagcgtcataggcactacgactaccatga 297
||| ||||||||||| |||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct: 61 ccgtggcagggaccgttacagggatagatataagcgccatagacactacgactaccatga 120
Query: 298 cgagctatagatcctgtattcttttgaaatctgcacgatattggatgtct 347
||||||||||||| || | |||||||||||||||| |||||| |||||
Sbjct: 121 cgagctatagatcatg---tgttttgaaatctgcacgttattggttgtct 167
Score = 147 bits (74), Expect = 1e-033
Identities = 114/126 (90%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 362 cacgtgcaaaacttgtatgttgtactcacggatgaagctgaacctgtgatttt-ggcgat 420
|||||||| |||||||||||||||| |||| || |||||||| ||||||||| ||||||
Sbjct: 275 cacgtgcagaacttgtatgttgtacacacgaatcaagctgaatttgtgatttttggcgat 334
Query: 421 gggtagagattggccatcgcgtctgtaactaaatttccacgttgcgatgcaatatgagct 480
|||||||||||| |||||||| |||||||||||||||| | |||||| ||||||||||||
Sbjct: 335 gggtagagattgaccatcgcggctgtaactaaatttccccattgcgaggcaatatgagct 394
Query: 481 gtagta 486
||||||
Sbjct: 395 gtagta 400
>gb|BM329205.1|BM329205 PIC1_34_G04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 539
Score = 186 bits (94), Expect = 2e-045
Identities = 132/144 (91%), Gaps = 3/144 (2%)
Strand = Plus / Plus
Query: 204 aaggggagagacgaaggcgggagagggatagggaccgcggcagggaccgatacaaggata 263
||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct: 1 aaggggagagacgaaggcgggagagggatagggaccgtggcagggaccgttacagggata 60
Query: 264 gatataagcgtcataggcactacgactaccatgacgagctatagatcctgtattcttttg 323
|||||||||| ||||| |||||||||||||||||||||||||||||| || | |||||
Sbjct: 61 gatataagcgccatagacactacgactaccatgacgagctatagatcatg---tgttttg 117
Query: 324 aaatctgcacgatattggatgtct 347
||||||||||| |||||| |||||
Sbjct: 118 aaatctgcacgttattggttgtct 141
Score = 147 bits (74), Expect = 1e-033
Identities = 114/126 (90%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 362 cacgtgcaaaacttgtatgttgtactcacggatgaagctgaacctgtgatttt-ggcgat 420
|||||||| |||||||||||||||| |||| || |||||||| ||||||||| ||||||
Sbjct: 249 cacgtgcagaacttgtatgttgtacacacgaatcaagctgaatttgtgatttttggcgat 308
Query: 421 gggtagagattggccatcgcgtctgtaactaaatttccacgttgcgatgcaatatgagct 480
|||||||||||| |||||||| |||||||||||||||| | |||||| ||||||||||||
Sbjct: 309 gggtagagattgaccatcgcggctgtaactaaatttccccattgcgaggcaatatgagct 368
Query: 481 gtagta 486
||||||
Sbjct: 369 gtagta 374
>gb|CW178060.1|CW178060 104_591_11159361_116_36611_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159361, DNA
sequence
Length = 666
Score = 182 bits (92), Expect = 2e-044
Identities = 98/100 (98%)
Strand = Plus / Minus
Query: 26 caggtcaaagctggttcagtttttgacaacattttgatttgcgatgacccagactatgca 85
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 337 caggtcaaagctggttcggtttttgacaacattttgatttgcgatgatccagactatgca 278
Query: 86 agacatgttgtagatgaaacttttgctgcaaataaggagg 125
||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agacatgttgtagatgaaacttttgctgcaaataaggagg 238
Score = 103 bits (52), Expect = 2e-020
Identities = 58/60 (96%)
Strand = Plus / Minus
Query: 123 aggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagagg 182
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 152 aggctgaaaaagaggcctttgaaggagctgaaaggaagaggaaggctagagaagaagagg 93
Score = 52.0 bits (26), Expect = 6e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 gcagtatgtggggattgaagtatggcaggt 30
||||||||||||||||||||| ||||||||
Sbjct: 466 gcagtatgtggggattgaagtctggcaggt 437
>gb|CD223826.1|CD223826 CCC1_30_C12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_30_C12_A007 3', mRNA sequence
Length = 680
Score = 161 bits (81), Expect = 9e-038
Identities = 129/145 (88%)
Strand = Plus / Plus
Query: 11 gggattgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgat 70
||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 60 gggattgaagtttggcaggtaaaagctggttcagttttcgacaacattttgatttgtgat 119
Query: 71 gacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaa 130
||||| || ||||||||| ||||||| || ||||||| | ||| |||| ||||||||||
Sbjct: 120 gaccctgagtatgcaagaaatgttgttgaggaaacttggggtgctaatagggaggctgaa 179
Query: 131 aaggaggcctttgaaggagctgaaa 155
|||||||| ||||||| ||||||||
Sbjct: 180 aaggaggcttttgaagaagctgaaa 204
>gb|CF431305.1|CF431305 NIT1_5_F06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_5_F06_A002 3', mRNA sequence
Length = 524
Score = 159 bits (80), Expect = 4e-037
Identities = 118/130 (90%), Gaps = 3/130 (2%)
Strand = Plus / Plus
Query: 218 aggcgggagagggatagggaccgcggcagggaccgatacaaggatagatataagcgtcat 277
||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||
Sbjct: 159 aggcgggagagggatagggaccgtggcagggaccgttacagggatagatataagcgccat 218
Query: 278 aggcactacgactaccatgacgagctatagatcctgtattcttttgaaatctgcacgata 337
|| |||||||||||||||||||||||||||||| || | |||||||||||||||| ||
Sbjct: 219 agacactacgactaccatgacgagctatagatcatg---tgttttgaaatctgcacgtta 275
Query: 338 ttggatgtct 347
|||| |||||
Sbjct: 276 ttggttgtct 285
Score = 147 bits (74), Expect = 1e-033
Identities = 114/126 (90%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 362 cacgtgcaaaacttgtatgttgtactcacggatgaagctgaacctgtgatttt-ggcgat 420
|||||||| |||||||||||||||| |||| || |||||||| ||||||||| ||||||
Sbjct: 393 cacgtgcagaacttgtatgttgtacacacgaatcaagctgaatttgtgatttttggcgat 452
Query: 421 gggtagagattggccatcgcgtctgtaactaaatttccacgttgcgatgcaatatgagct 480
|||||||||||| |||||||| |||||||||||||||| | |||||| ||||||||||||
Sbjct: 453 gggtagagattgaccatcgcggctgtaactaaatttccccattgcgaggcaatatgagct 512
Query: 481 gtagta 486
||||||
Sbjct: 513 gtagta 518
>gb|CW185874.1|CW185874 104_603_11166274_148_36703_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166274, DNA
sequence
Length = 691
Score = 147 bits (74), Expect = 1e-033
Identities = 114/126 (90%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 362 cacgtgcaaaacttgtatgttgtactcacggatgaagctgaacctgtgatttt-ggcgat 420
|||||||| |||||||||||||||| |||| || |||||||| ||||||||| ||||||
Sbjct: 448 cacgtgcagaacttgtatgttgtacacacgaatcaagctgaatttgtgatttttggcgat 507
Query: 421 gggtagagattggccatcgcgtctgtaactaaatttccacgttgcgatgcaatatgagct 480
|||||||||||| |||||||| |||||||||||||||| | |||||| ||||||||||||
Sbjct: 508 gggtagagattgaccatcgcggctgtaactaaatttccccattgcgaggcaatatgagct 567
Query: 481 gtagta 486
||||||
Sbjct: 568 gtagta 573
Score = 44.1 bits (22), Expect = 0.014
Identities = 45/52 (86%), Gaps = 3/52 (5%)
Strand = Plus / Plus
Query: 296 gacgagctatagatcctgtattcttttgaaatctgcacgatattggatgtct 347
||||||||||||||| ||| || |||||||||||||| |||||| |||||
Sbjct: 292 gacgagctatagatcatgtgtt---ttgaaatctgcacgttattggttgtct 340
>gb|BZ412929.1|BZ412929 232a8_13 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 232a8, DNA
sequence
Length = 682
Score = 85.7 bits (43), Expect = 4e-015
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 25 gcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgacccagactatgc 84
|||||| ||||||||||||||||| |||||| ||||||||| |||||||| || |||||
Sbjct: 480 gcaggtaaaagctggttcagttttcgacaaccatttgatttgtgatgaccctgagtatgc 539
Query: 85 aagacatgttgtagatgaaactt 107
|||| ||||||| || |||||||
Sbjct: 540 aagaaatgttgttgaggaaactt 562
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 154,118
Number of Sequences: 832831
Number of extensions: 154118
Number of successful extensions: 43950
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43894
Number of HSP's gapped (non-prelim): 34
length of query: 595
length of database: 491,359,669
effective HSP length: 19
effective length of query: 576
effective length of database: 475,535,880
effective search space: 273908666880
effective search space used: 273908666880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)