BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8011540.2.1
(1916 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA738547.1|AA738547 SbRLK5 Sorghum bicolor cv. TX430 lea... 884 0.0
gb|BM325664.1|BM325664 PIC1_47_C09.b1_A002 Pathogen-infecte... 848 0.0
gb|BE599188.1|BE599188 PI1_86_D11.b1_A002 Pathogen induced ... 833 0.0
gb|BM324174.1|BM324174 PIC1_25_A08.b1_A002 Pathogen-infecte... 801 0.0
gb|BM322546.1|BM322546 PIC1_6_B09.b1_A002 Pathogen-infected... 779 0.0
gb|BE598826.1|BE598826 PI1_83_G03.b1_A002 Pathogen induced ... 761 0.0
gb|BE598205.1|BE598205 PI1_66_H12.b1_A002 Pathogen induced ... 628 e-178
gb|BE600711.1|BE600711 PI1_91_F12.b1_A002 Pathogen induced ... 422 e-116
gb|BE599023.1|BE599023 PI1_86_D11.g1_A002 Pathogen induced ... 404 e-110
gb|BE364036.1|BE364036 PI1_11_B09.b1_A002 Pathogen induced ... 391 e-106
gb|BG047834.1|BG047834 OV1_28_D04.b1_A002 Ovary 1 (OV1) Sor... 353 4e-095
gb|BE364131.1|BE364131 PI1_11_B09.g1_A002 Pathogen induced ... 272 1e-070
gb|CN138649.1|CN138649 OX1_13_C09.b1_A002 Oxidatively-stres... 240 4e-061
gb|CD425978.1|CD425978 SA1_15_E03.g1_A002 Salicylic acid-tr... 238 2e-060
gb|CL177097.1|CL177097 104_384_10893597_116_31916_045 Sorgh... 204 2e-050
gb|CW447061.1|CW447061 fsbb001f179p17f0 Sorghum methylation... 190 3e-046
gb|BE366607.1|BE366607 PI1_35_G02.g1_A002 Pathogen induced ... 180 3e-043
gb|BE594637.1|BE594637 PI1_35_G02.b1_A002 Pathogen induced ... 180 3e-043
gb|BE598493.1|BE598493 PI1_83_G12.g1_A002 Pathogen induced ... 180 3e-043
gb|BE598817.1|BE598817 PI1_83_G12.b1_A002 Pathogen induced ... 180 3e-043
gb|BG048156.1|BG048156 OV1_28_D04.g1_A002 Ovary 1 (OV1) Sor... 172 8e-041
gb|BM326208.1|BM326208 PIC1_72_A02.b1_A002 Pathogen-infecte... 161 3e-037
gb|CL177098.1|CL177098 104_384_10893597_148_31915_045 Sorgh... 159 1e-036
gb|BM328664.1|BM328664 PIC1_25_A08.g1_A002 Pathogen-infecte... 143 7e-032
gb|BE597915.1|BE597915 PI1_66_H12.g1_A002 Pathogen induced ... 135 2e-029
gb|CW047861.1|CW047861 104_285_10512917_114_30216 Sorghum m... 133 7e-029
gb|BE601334.1|BE601334 PI1_91_F12.g1_A002 Pathogen induced ... 121 3e-025
gb|CW148630.1|CW148630 104_547_11142056_116_35013_026 Sorgh... 113 6e-023
gb|BE356037.1|BE356037 DG1_121_D02.g1_A002 Dark Grown 1 (DG... 109 1e-021
gb|BE366221.1|BE366221 PI1_31_B07.b2_A002 Pathogen induced ... 103 6e-020
gb|CW021178.1|CW021178 104_109_10409392_114_30490 Sorghum m... 101 2e-019
gb|BE598502.1|BE598502 PI1_83_G03.g1_A002 Pathogen induced ... 82 2e-013
gb|CD425663.1|CD425663 SA1_13_E03.g1_A002 Salicylic acid-tr... 82 2e-013
gb|CF487114.1|CF487114 POL1_41_G11.g1_A002 Pollen Sorghum b... 72 2e-010
gb|CN138729.1|CN138729 OX1_13_C09.g1_A002 Oxidatively-stres... 72 2e-010
gb|CW100957.1|CW100957 104_468_11004380_148_34395_072 Sorgh... 68 3e-009
gb|BG273646.1|BG273646 OV2_28_C05.b1_A002 Ovary 2 (OV2) Sor... 66 1e-008
gb|CW333249.1|CW333249 104_831_11481839_148_36047_094 Sorgh... 62 2e-007
gb|CW364296.1|CW364296 fsbb001f036e13f0 Sorghum methylation... 62 2e-007
gb|CW482164.1|CW482164 fsbb001f242b21k0 Sorghum methylation... 62 2e-007
gb|CD204459.1|CD204459 HS1_8_B12.b1_A012 Heat-shocked seedl... 60 8e-007
gb|CW028745.1|CW028745 104_256_10499280_114_30399 Sorghum m... 54 5e-005
gb|CW459235.1|CW459235 fsbb001f205o01k0 Sorghum methylation... 52 2e-004
gb|BM331493.1|BM331493 PIC1_72_A02.g1_A002 Pathogen-infecte... 52 2e-004
gb|CD224715.1|CD224715 CCC1_35_E08.g1_A007 Callus culture/c... 52 2e-004
gb|CW364342.1|CW364342 fsbb001f036f13f0 Sorghum methylation... 50 8e-004
gb|CW444977.1|CW444977 fsbb001f166n12k0 Sorghum methylation... 50 8e-004
gb|BI098066.1|BI098066 IP1_31_F02.g1_A002 Immature pannicle... 46 0.012
gb|BM325250.1|BM325250 PIC1_42_G04.b1_A002 Pathogen-infecte... 46 0.012
gb|CD211877.1|CD211877 HS1_67_B04.b1_A012 Heat-shocked seed... 46 0.012
emb|Y14600.1|SBRLK1 Sorghum bicolor mRNA for protein serine... 46 0.012
gb|BZ348765.1|BZ348765 hp61a07.g2 WGS-SbicolorF (JM107 adap... 44 0.048
gb|CW356795.1|CW356795 fsbb001f023b08k0 Sorghum methylation... 42 0.19
gb|CW426425.1|CW426425 fsbb001f137m24f0 Sorghum methylation... 42 0.19
gb|CW426426.1|CW426426 fsbb001f137m24k0 Sorghum methylation... 42 0.19
>gb|AA738547.1|AA738547 SbRLK5 Sorghum bicolor cv. TX430 leaf Sorghum bicolor cDNA clone
SbRLK5 similar to protein kinase, highest similarity to
receptor-like protein kinases, mRNA sequence
Length = 656
Score = 884 bits (446), Expect = 0.0
Identities = 568/608 (93%), Gaps = 3/608 (0%)
Strand = Plus / Plus
Query: 1312 cttcgtggtttctgcatgacacctactgaacggttgctggtctacccatacatggctaat 1371
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 cttcgtggtttctgcatgacgcctactgaacggttgctagtctacccatacatggctaat 60
Query: 1372 ggcagtgtggcatcacgtttacgagagcgccaggcatctgaaccacctcttaaatgggaa 1431
|| |||||||||||||||||||||||||| ||| |||||| |||||| |||| ||||||
Sbjct: 61 gggagtgtggcatcacgtttacgagagcgacagcaatctgagccacctgttaagtgggaa 120
Query: 1432 acaa---gaagacggattgcactgggatctgcaagaggtctttcttacttgcatgatcac 1488
|||| ||||||||||||| || |||| ||||||||| |||||||||||||||||||||
Sbjct: 121 acaacaagaagacggattgcgcttggatgtgcaagaggactttcttacttgcatgatcac 180
Query: 1489 tgcgatcctaagatcatccatcgggatgtcaaagctgcaaatattcttttggatgaggag 1548
|||||||| || ||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 181 tgcgatcccaaaatcatccatcgggatctcaaagctgcaaatattcttttccatgaggac 240
Query: 1549 tttgaggcagtcgtaggtgatttcgggcttgccaagcttatggactacaaggatacccat 1608
|| |||||||| || |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 241 ttcgaggcagttgtgggtgattttgggcttgccaagcttatggactacaaagatacccat 300
Query: 1609 gtcacaactgctgttcgtggaacaattggacacattgctcccgagtacctatccactggc 1668
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 301 gtcacaactgctgtccgtggaacaattggacacattgcgcctgagtacctatccactggc 360
Query: 1669 aagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggagcttattact 1728
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 361 aagtcctctgaaaagactgatgtttttggctatgggatcatgcttctggagcttattact 420
Query: 1729 ggacagagggcatttgatctagctcgtcttgcaaatgatgatgatgttatgcttcttgac 1788
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 421 ggccagagggcatttgatcttgctcgtcttgcaaatgatgacgatgttatgcttcttgac 480
Query: 1789 tgggtgaaaggactgctgaaggagaaaaaggtggagatgttggtggacccagatctacag 1848
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||
Sbjct: 481 tgggtgaaaggactgctgaaggagaagaaggtggagatgctggtggacccagatctgcag 540
Query: 1849 aatgcctacgaggagatcgaggtggagaaccttatccaggtggcactcctctgcacgcag 1908
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 541 aacgcctacgaggagatcgaggtggagaacctgatccaggtggcactcctctgcacgcag 600
Query: 1909 ggctcccc 1916
||||||||
Sbjct: 601 ggctcccc 608
>gb|BM325664.1|BM325664 PIC1_47_C09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 604
Score = 848 bits (428), Expect = 0.0
Identities = 554/596 (92%)
Strand = Plus / Plus
Query: 625 atccctgacagcctagggaatctattgaagctgcgtttcctacgtcttaacaacaacagc 684
|||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 9 atccctgacagcctggggaatcttctgaagctgcggttcctacgtcttaacaacaacagc 68
Query: 685 ttggttggtcccattcctgtagccttgaccaatatctccactctccaagtactggatctc 744
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 69 ttggttggtcaaattcctgtatccttgaccaatatctccactctccaagtactggatctc 128
Query: 745 tcgagtaacaacctctcaggaccagtctcatccaatggctccttttcactcttcacccct 804
|||| |||||||||||||||| |||| |||| | ||||||||||||||||||||||||
Sbjct: 129 tcgaacaacaacctctcaggacaagtcccatcaacaggctccttttcactcttcacccct 188
Query: 805 ataagttttaacaataatccaaatctttgtggccctgttactacgaagccctgccctggg 864
|| |||||| ||| |||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 189 attagttttgccaacaatccaggcctttgtggccctggtactacgaagccctgccctggg 248
Query: 865 gatcctcccttttccccaccgcctccattcaatcctccgtctcccccaacccaatcaact 924
| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 249 gctcctcccttttccccgcctcctccattcaatcctccatctcccccaacccaatcaacc 308
Query: 925 ggtgcttctggccctggagcaatcgctggaggtgttgctgctggtgctgcattggttttt 984
||||| ||| || ||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct: 309 ggtgcctctagcactggagcaatcgctggaggcgttgctgctggtgcagcattggtgttt 368
Query: 985 gctgttccagcaattgcatttgcaatgtggcgccgtcgtaaacctgaagagcatttcttc 1044
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gctgttcctgcaattgcatttgcaatgtggcgccgtcgtaaacctgaagagcatttcttc 428
Query: 1045 gatgttcctgccgaggaggatccagaagttcatcttggtcagctcaaaaagttttcgttg 1104
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 429 gatgtacctgccgaagaggatccagaagtccatcttggtcagctcaaaaagttttcgttg 488
Query: 1105 cgggagcttcaagttgctactgatacttttagtaacaagcacattttaggaagaggtggt 1164
||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct: 489 cgggagcttcaagttgcaactgataatttcagtaacaagaacattttaggaagaggtggt 548
Query: 1165 tttggaaaagtgtacaagggaaggcttgctgatggctcattggtagcagtgaaaag 1220
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 549 tttggaaaagtgtacaagggaaggcttgctgatggctctttggtagcagtgaaaag 604
>gb|BE599188.1|BE599188 PI1_86_D11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 537
Score = 833 bits (420), Expect = 0.0
Identities = 501/528 (94%)
Strand = Plus / Plus
Query: 867 tcctcccttttccccaccgcctccattcaatcctccgtctcccccaacccaatcaactgg 926
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 10 tcctcccttttccccgcctcctccattcaatcctccatctcccccaacccaatcaaccgg 69
Query: 927 tgcttctggccctggagcaatcgctggaggtgttgctgctggtgctgcattggtttttgc 986
||| ||| || ||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 70 tgcctctagcactggagcaatcgctggaggcgttgctgctggtgcagcattggtgtttgc 129
Query: 987 tgttccagcaattgcatttgcaatgtggcgccgtcgtaaacctgaagagcatttcttcga 1046
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tgttcctgcaattgcatttgcaatgtggcgccgtcgtaaacctgaagagcatttcttcga 189
Query: 1047 tgttcctgccgaggaggatccagaagttcatcttggtcagctcaaaaagttttcgttgcg 1106
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 190 tgtacctgccgaagaggatccagaagtccatcttggtcagctcaaaaagttttcgttgcg 249
Query: 1107 ggagcttcaagttgctactgatacttttagtaacaagcacattttaggaagaggtggttt 1166
||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct: 250 ggagcttcaagttgcaactgataatttcagtaacaagaacattttaggaagaggtggttt 309
Query: 1167 tggaaaagtgtacaagggaaggcttgctgatggctcattggtagcagtgaaaagactaaa 1226
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 310 tggaaaagtgtacaagggaaggcttgctgatggctctttggtagcagtgaaaaggctaaa 369
Query: 1227 agaggagcgcacacctggtggtgagcttcagtttcaaacagaggttgagatgattagcat 1286
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 370 agaggagcgaacacctggtggtgaacttcagttccaaacagaggttgagatgattagcat 429
Query: 1287 ggcagtgcacaggaaccttctccgacttcgtggtttctgcatgacacctactgaacggtt 1346
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 430 ggcagtgcacaggaaccttctcagacttcgtggtttctgcatgacgcctactgaacggtt 489
Query: 1347 gctggtctacccatacatggctaatggcagtgtggcatcacgtttacg 1394
||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 490 gctagtctacccatacatggctaatgggagtgtggcatcacgtttacg 537
>gb|BM324174.1|BM324174 PIC1_25_A08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 519
Score = 801 bits (404), Expect = 0.0
Identities = 485/512 (94%)
Strand = Plus / Plus
Query: 885 gcctccattcaatcctccgtctcccccaacccaatcaactggtgcttctggccctggagc 944
|||||||||||||||||| |||||||||||||||||||| ||||| ||| || |||||||
Sbjct: 8 gcctccattcaatcctccatctcccccaacccaatcaaccggtgcctctagcactggagc 67
Query: 945 aatcgctggaggtgttgctgctggtgctgcattggtttttgctgttccagcaattgcatt 1004
|||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 68 aatcgctggaggcgttgctgctggtgcagcattggtgtttgctgttcctgcaattgcatt 127
Query: 1005 tgcaatgtggcgccgtcgtaaacctgaagagcatttcttcgatgttcctgccgaggagga 1064
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 128 tgcaatgtggcgccgtcgtaaacctgaagagcatttcttcgatgtacctgccgaagagga 187
Query: 1065 tccagaagttcatcttggtcagctcaaaaagttttcgttgcgggagcttcaagttgctac 1124
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 188 tccagaagtccatcttggtcagctcaaaaagtttatgttgcgggagcttcaagttgcaac 247
Query: 1125 tgatacttttagtaacaagcacattttaggaagaggtggttttggaaaagtgtacaaggg 1184
||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgataatttcagtaacaagaacattttaggaagaggtggttttggaaaagtgtacaaggg 307
Query: 1185 aaggcttgctgatggctcattggtagcagtgaaaagactaaaagaggagcgcacacctgg 1244
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 308 aaggcttgctgatggctctttggtagcagtgaaaaggctaaaagaggagcgaacacctgg 367
Query: 1245 tggtgagcttcagtttcaaacagaggttgagatgattagcatggcagtgcacaggaacct 1304
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tggtgaacttcagttccaaacagaggttgagatgattagcatggcagtgcacaggaacct 427
Query: 1305 tctccgacttcgtggtttctgcatgacacctactgaacggttgctggtctacccatacat 1364
|||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 428 tctcagacttcgtggtttctgcatgacgcctactgaacggttgctagtctacccatacat 487
Query: 1365 ggctaatggcagtgtggcatcacgtttacgag 1396
||||||||| ||||||||||||||||||||||
Sbjct: 488 ggctaatgggagtgtggcatcacgtttacgag 519
>gb|BM322546.1|BM322546 PIC1_6_B09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 498
Score = 779 bits (393), Expect = 0.0
Identities = 465/489 (95%)
Strand = Plus / Plus
Query: 885 gcctccattcaatcctccgtctcccccaacccaatcaactggtgcttctggccctggagc 944
|||||||||||||||||| |||||||||||||||||||| ||||| ||| || |||||||
Sbjct: 8 gcctccattcaatcctccatctcccccaacccaatcaaccggtgcctctagcactggagc 67
Query: 945 aatcgctggaggtgttgctgctggtgctgcattggtttttgctgttccagcaattgcatt 1004
|||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 68 aatcgctggaggcgttgctgctggtgcagcattggtgtttgctgttcctgcaattgcatt 127
Query: 1005 tgcaatgtggcgccgtcgtaaacctgaagagcatttcttcgatgttcctgccgaggagga 1064
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 128 tgcaatgtggcgccgtcgtaaacctgaagagcatttcttcgatgtacctgccgaagagga 187
Query: 1065 tccagaagttcatcttggtcagctcaaaaagttttcgttgcgggagcttcaagttgctac 1124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 188 tccagaagtccatcttggtcagctcaaaaagttttcgttgcgggagcttcaagttgcaac 247
Query: 1125 tgatacttttagtaacaagcacattttaggaagaggtggttttggaaaagtgtacaaggg 1184
||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgataatttcagtaacaagaacattttaggaagaggtggttttggaaaagtgtacaaggg 307
Query: 1185 aaggcttgctgatggctcattggtagcagtgaaaagactaaaagaggagcgcacacctgg 1244
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 308 aaggcttgctgatggctctttggtagcagtgaaaaggctaaaagaggagcgaacacctgg 367
Query: 1245 tggtgagcttcagtttcaaacagaggttgagatgattagcatggcagtgcacaggaacct 1304
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tggtgaacttcagttccaaacagaggttgagatgattagcatggcagtgcacaggaacct 427
Query: 1305 tctccgacttcgtggtttctgcatgacacctactgaacggttgctggtctacccatacat 1364
|||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 428 tctcagacttcgtggtttctgcatgacgcctactgaacggttgctagtctacccatacat 487
Query: 1365 ggctaatgg 1373
|||||||||
Sbjct: 488 ggctaatgg 496
>gb|BE598826.1|BE598826 PI1_83_G03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 571
Score = 761 bits (384), Expect = 0.0
Identities = 518/563 (92%)
Strand = Plus / Plus
Query: 384 cactcttgttaatccatgtacatggtttcacgttacgtgtaacagcgataacagtgttat 443
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 9 cactcttgttaatccatgtacatggttccacgttacgtgtaacaacgataacagtgttat 68
Query: 444 cagagttgaccttggaaatgcacaattatctggcgtcctagtgccacagcttggtcagct 503
|||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 69 cagagttgacctcggaaatgcacaattgtctggtgtcctagtgccacaacttggtcagct 128
Query: 504 gaaaaatctccaatatttggagctttacagcaacaaaataagtggggcaataccccctga 563
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 129 gaaaaatctccaatatttggagctttacagcaacaacataagtggaacaataccccctga 188
Query: 564 actggggaacctaactaaccttgtcagtttggatctgtatatgaacaacttctctggcaa 623
|||||||||| | |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 189 actggggaacttgactaacttggtcagtttggatctgtatatgaacaacttctctggcag 248
Query: 624 tatccctgacagcctagggaatctattgaagctgcgtttcctacgtcttaacaacaacag 683
||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 249 tatccctgacagcctggggaatcttctgaagctgcggttcctacgtcttaacaacaacag 308
Query: 684 cttggttggtcccattcctgtagccttgaccaatatctccactctccaagtactggatct 743
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 309 cttggttggtcaaattcctgtatccttgaccaatatctccactctccaagtactggatct 368
Query: 744 ctcgagtaacaacctctcaggaccagtctcatccaatggctccttttcactcttcacccc 803
||||| |||||||||||||||| |||| |||| | |||||||||||||||||||||||
Sbjct: 369 ctcgaacaacaacctctcaggacaagtcccatcaacaggctccttttcactcttcacccc 428
Query: 804 tataagttttaacaataatccaaatctttgtggccctgttactacgaagccctgccctgg 863
||| |||||| ||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 429 tattagttttgccaacaatccaggcctttgtggccctggtactacgaagccctgccctgn 488
Query: 864 ggatcctcccttttccccaccgcctccattcaatcctccgtctcccccaacccaatcaac 923
|| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 489 ggctcctcccttttccccgcctcctccattcaatcctccatctcccccaacccaatcaac 548
Query: 924 tggtgcttctggccctggagcaa 946
||||| ||| || |||||||||
Sbjct: 549 cggtgcctctagcactggagcaa 571
>gb|BE598205.1|BE598205 PI1_66_H12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 566
Score = 628 bits (317), Expect = e-178
Identities = 435/475 (91%), Gaps = 10/475 (2%)
Strand = Plus / Plus
Query: 174 ggacccgcgcgcccatgcgtcggtgaggtggtgggg-cccgcttggcgctcntnttggaa 232
||||||||| |||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct: 89 ggacccgcgagcccatgcgtcggtgaggtggtgggggcccgcttggcgcacgagttggaa 148
Query: 233 tggcggcgg---------cagggaggtggtgggcggtggtccttgcggtcgcggtgctgc 283
||||||||| | ||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 149 tggcggcggctgcggcggcggggagctggtgggcggtggtccttgcggtggcggtgctgc 208
Query: 284 tcgggccgggccgggtcgtcgccaacaccgagggcgatgctctatacagcctgcggcaga 343
|||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 209 tcgggccgggacgtgtcgtcgccaacaccgagggtgatgctctgtacagcctgcggcaga 268
Query: 344 gcttgatagatacgaacaatgtcttgcagagttgggattccactcttgttaatccatgta 403
|||||| |||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 269 gcttgaaagatgctaacaatgtcttgcagagttgggatcccactcttgttaatccatgta 328
Query: 404 catggtttcacgttacgtgtaacagcgataacagtgttatcagagttgaccttggaaatg 463
||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 329 catggttccacgttacgtgtaacaacgataacagtgttatcagagttgacctcggaaatg 388
Query: 464 cacaattatctggcgtcctagtgccacagcttggtcagctgaaaaatctccaatatttgg 523
||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 389 cacaattgtctggtgtcctagtgccacaacttggtcagctgaaaaatctccaatatttgg 448
Query: 524 agctttacagcaacaaaataagtggggcaataccccctgaactggggaacctaactaacc 583
|||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||
Sbjct: 449 agctttacagcaacaacataagtggaacaataccccctgaactggggaacttgactaact 508
Query: 584 ttgtcagtttggatctgtatatgaacaacttctctggcaatatccctgacagcct 638
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 509 tggtcagtttggatctgtatatgaacaacttctctggcagtatccctgacagcct 563
>gb|BE600711.1|BE600711 PI1_91_F12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 533
Score = 422 bits (213), Expect = e-116
Identities = 243/253 (96%)
Strand = Plus / Plus
Query: 1664 ctggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggagctta 1723
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 9 ctggcaagtcctctgaaaagactgatgtttttggctatgggatcatgcttctggagctta 68
Query: 1724 ttactggacagagggcatttgatctagctcgtcttgcaaatgatgatgatgttatgcttc 1783
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 69 ttactggccagagggcatttgatcttgctcgtcttgcaaatgatgacgatgttatgcttc 128
Query: 1784 ttgactgggtgaaaggactgctgaaggagaaaaaggtggagatgttggtggacccagatc 1843
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 129 ttgactgggtgaaaggactgctgaaggagaagaaggtggagatgctggtggacccagatc 188
Query: 1844 tacagaatgcctacgaggagatcgaggtggagaaccttatccaggtggcactcctctgca 1903
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 189 tgcagaacgcctacgaggagatcgaggtggagaacctgatccaggtggcactcctctgca 248
Query: 1904 cgcagggctcccc 1916
|||||||||||||
Sbjct: 249 cgcagggctcccc 261
>gb|BE599023.1|BE599023 PI1_86_D11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 666
Score = 404 bits (204), Expect = e-110
Identities = 234/244 (95%)
Strand = Plus / Plus
Query: 1673 cctctgaaaagaccgatgtttttggatatgggatcatgcttctggagcttattactggac 1732
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 1 cctctgaaaagactgatgtttttggctatgggatcatgcttctggagcttattactggcc 60
Query: 1733 agagggcatttgatctagctcgtcttgcaaatgatgatgatgttatgcttcttgactggg 1792
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 agagggcatttgatcttgctcgtcttgcaaatgatgacgatgttatgcttcttgactggg 120
Query: 1793 tgaaaggactgctgaaggagaaaaaggtggagatgttggtggacccagatctacagaatg 1852
|||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| |
Sbjct: 121 tgaaaggactgctgaaggagaagaaggtggagatgctggtggacccagatctgcagaacg 180
Query: 1853 cctacgaggagatcgaggtggagaaccttatccaggtggcactcctctgcacgcagggct 1912
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 181 cctacgaggagatcgaggtggagaacctgatccaggtggcactcctctgcacgcagggct 240
Query: 1913 cccc 1916
||||
Sbjct: 241 cccc 244
>gb|BE364036.1|BE364036 PI1_11_B09.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 502
Score = 391 bits (197), Expect = e-106
Identities = 227/237 (95%)
Strand = Plus / Plus
Query: 1680 aaagaccgatgtttttggatatgggatcatgcttctggagcttattactggacagagggc 1739
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 9 aaagactgatgtttttggctatgggatcatgcttctggagcttattactggccagagggc 68
Query: 1740 atttgatctagctcgtcttgcaaatgatgatgatgttatgcttcttgactgggtgaaagg 1799
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 69 atttgatcttgctcgtcttgcaaatgatgacgatgttatgcttcttgactgggtgaaagg 128
Query: 1800 actgctgaaggagaaaaaggtggagatgttggtggacccagatctacagaatgcctacga 1859
||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||
Sbjct: 129 actgctgaaggagaagaaggtggagatgctggtggacccagatctgcagaacgcctacga 188
Query: 1860 ggagatcgaggtggagaaccttatccaggtggcactcctctgcacgcagggctcccc 1916
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 189 ggagatcgaggtggagaacctgatccaggtggcactcctctgcacgcagggctcccc 245
>gb|BG047834.1|BG047834 OV1_28_D04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 485
Score = 353 bits (178), Expect = 4e-095
Identities = 202/210 (96%)
Strand = Plus / Plus
Query: 1707 catgcttctggagcttattactggacagagggcatttgatctagctcgtcttgcaaatga 1766
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 19 catgcttctggagcttattactggccagagggcatttgatcttgctcgtcttgcaaatga 78
Query: 1767 tgatgatgttatgcttcttgactgggtgaaaggactgctgaaggagaaaaaggtggagat 1826
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 79 tgacgatgttatgcttcttgactgggtgaaaggactgctgaaggagaagaaggtggagat 138
Query: 1827 gttggtggacccagatctacagaatgcctacgaggagatcgaggtggagaaccttatcca 1886
| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 139 gctggtggacccagatctgcagaacgcctacgaggagatcgaggtggagaacctgatcca 198
Query: 1887 ggtggcactcctctgcacgcagggctcccc 1916
||||||||||||||||||||||||||||||
Sbjct: 199 ggtggcactcctctgcacgcagggctcccc 228
>gb|BE364131.1|BE364131 PI1_11_B09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 635
Score = 272 bits (137), Expect = 1e-070
Identities = 155/161 (96%)
Strand = Plus / Plus
Query: 1756 cttgcaaatgatgatgatgttatgcttcttgactgggtgaaaggactgctgaaggagaaa 1815
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttgcaaatgatgacgatgttatgcttcttgactgggtgaaaggactgctgaaggagaag 60
Query: 1816 aaggtggagatgttggtggacccagatctacagaatgcctacgaggagatcgaggtggag 1875
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 61 aaggtggagatgctggtggacccagatctgcagaacgcctacgaggagatcgaggtggag 120
Query: 1876 aaccttatccaggtggcactcctctgcacgcagggctcccc 1916
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 121 aacctgatccaggtggcactcctctgcacgcagggctcccc 161
>gb|CN138649.1|CN138649 OX1_13_C09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_13_C09_A002 3', mRNA sequence
Length = 683
Score = 240 bits (121), Expect = 4e-061
Identities = 511/641 (79%)
Strand = Plus / Plus
Query: 1153 ggaagaggtggttttggaaaagtgtacaagggaaggcttgctgatggctcattggtagca 1212
||||||||||| ||||| ||||| ||||| ||| |||| || ||||| ||||| || ||
Sbjct: 21 ggaagaggtggatttggcaaagtctacaaaggacggctggcagatggatcattagttgct 80
Query: 1213 gtgaaaagactaaaagaggagcgcacacctggtggtgagcttcagtttcaaacagaggtt 1272
|| || |||||||| || |||||||| |||||||| || | |||||||||||||| |||
Sbjct: 81 gttaagagactaaaggaagagcgcacgcctggtggggaattacagtttcaaacagaagtt 140
Query: 1273 gagatgattagcatggcagtgcacaggaaccttctccgacttcgtggtttctgcatgaca 1332
||||||||||| ||||| || ||||| || || | | |||||||| ||||| |||||
Sbjct: 141 gagatgattagtatggctgtacacagaaatctattgggtcttcgtggattctgtatgacc 200
Query: 1333 cctactgaacggttgctggtctacccatacatggctaatggcagtgtggcatcacgttta 1392
|| || ||| ||||||| || || ||||||||||||||||| || || ||||||||||||
Sbjct: 201 ccaacagaaaggttgcttgtgtatccatacatggctaatggaagggttgcatcacgttta 260
Query: 1393 cgagagcgccaggcatctgaaccacctcttaaatgggaaacaagaagacggattgcactg 1452
|||| || | || |||||| || || | ||| ||||||||||| |||||||| ||
Sbjct: 261 agagaccggcccccaggtgaacctccgctagattggcaaacaagaagaaggattgcattg 320
Query: 1453 ggatctgcaagaggtctttcttacttgcatgatcactgcgatcctaagatcatccatcgg 1512
|| ||||| || || || ||||| || |||||||| || ||||| ||||| || ||||||
Sbjct: 321 ggttctgctaggggcctgtcttatttacatgatcattgtgatccaaagattattcatcgg 380
Query: 1513 gatgtcaaagctgcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatttc 1572
||||||||||| ||||||||| | || ||||| || || || || | || || |||||
Sbjct: 381 gatgtcaaagcggcaaatattttgttagatgaagacttcgaagctggggtgggggatttt 440
Query: 1573 gggcttgccaagcttatggactacaaggatacccatgtcacaactgctgttcgtggaaca 1632
|| | ||||| || ||||| ||||||||||||||||| || ||||||||||| ||||
Sbjct: 441 ggtttggccaaactaatggattacaaggatacccatgtaactactgctgttcggggaagg 500
Query: 1633 attggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtt 1692
||||| |||||||| || || | ||| || || || || |||| ||| || || |||||
Sbjct: 501 attgggcacattgcccctgaatccctttcaacaggaaaatcctttgagaaaactgatgta 560
Query: 1693 tttggatatgggatcatgcttctggagcttattactggacagagggcatttgatctagct 1752
||||| ||||| || | | || | ||||||||||| ||||| | || ||||||||||||
Sbjct: 561 tttggctatggaattacgtttttagagcttattacaggacaacgtgcctttgatctagct 620
Query: 1753 cgtcttgcaaatgatgatgatgttatgcttcttgactgggt 1793
| ||||| ||| |||| ||||| |||||||||||| ||||
Sbjct: 621 ccccttgctaataatgaggatgtcatgcttcttgacggggt 661
>gb|CD425978.1|CD425978 SA1_15_E03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_15_E03_A002 5', mRNA sequence
Length = 601
Score = 238 bits (120), Expect = 2e-060
Identities = 270/320 (84%)
Strand = Plus / Plus
Query: 301 gtcgccaacaccgagggcgatgctctatacagcctgcggcagagcttgatagatacgaac 360
||||||||||| ||||| |||||||| |||||||| ||||| ||| ||| ||||| |||
Sbjct: 266 gtcgccaacacggagggtgatgctctttacagcctacggcaaagcctgaaagataacaac 325
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcacgttacg 420
||||| |||||||||||||| | ||||| |||||||||||||||||||| || |||||
Sbjct: 326 aatgtgctgcagagttgggatccaactctggttaatccatgtacatggttccatgttact 385
Query: 421 tgtaacagcgataacagtgttatcagagttgaccttggaaatgcacaattatctggcgtc 480
|||||| ||||||||||| |||||| |||| ||||||||||||||| |||| ||
Sbjct: 386 tgtaaccctgataacagtgtcatcagacttgatcttggaaatgcacaactatcaggtccg 445
Query: 481 ctagtgccacagcttggtcagctgaaaaatctccaatatttggagctttacagcaacaaa 540
| |||||||||||||| || |||||||| | |||||| | || |||||||| |||||
Sbjct: 446 ttggtgccacagcttgggcaattgaaaaatatgcaatatctagaactttacagtaacaac 505
Query: 541 ataagtggggcaataccccctgaactggggaacctaactaaccttgtcagtttggatctg 600
||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||| ||
Sbjct: 506 ataagtgggccaataccacctgaactggggaacttaactaacctggtcagtttggatttg 565
Query: 601 tatatgaacaacttctctgg 620
|| | ||||||||| ||||
Sbjct: 566 tacctcaacaacttcactgg 585
>gb|CL177097.1|CL177097 104_384_10893597_116_31916_045 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893597, DNA
sequence
Length = 713
Score = 204 bits (103), Expect = 2e-050
Identities = 124/131 (94%)
Strand = Plus / Plus
Query: 319 gatgctctatacagcctgcggcagagcttgatagatacgaacaatgtcttgcagagttgg 378
|||||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 505 gatgctctgtacagcctgcggcagagcttgaaagatgctaacaatgtcttgcagagttgg 564
Query: 379 gattccactcttgttaatccatgtacatggtttcacgttacgtgtaacagcgataacagt 438
||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 565 gatcccactcttgttaatccatgtacatggttccacgttacgtgtaacaacgataacagt 624
Query: 439 gttatcagagt 449
|||||||||||
Sbjct: 625 gttatcagagt 635
>gb|CW447061.1|CW447061 fsbb001f179p17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f179p17, DNA
sequence
Length = 509
Score = 190 bits (96), Expect = 3e-046
Identities = 132/144 (91%)
Strand = Plus / Minus
Query: 522 ggagctttacagcaacaaaataagtggggcaataccccctgaactggggaacctaactaa 581
|||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||
Sbjct: 191 ggagctttacagcaacaacataagtggaacaataccccctgaactggggaacttgactaa 132
Query: 582 ccttgtcagtttggatctgtatatgaacaacttctctggcaatatccctgacagcctagg 641
| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 131 cttggtcagtttggatctgtatatgaacaacttctctggcagtatccctgacagcctggg 72
Query: 642 gaatctattgaagctgcgtttcct 665
|||||| |||||||||| |||||
Sbjct: 71 gaatcttctgaagctgcggttcct 48
>gb|BE366607.1|BE366607 PI1_35_G02.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 673
Score = 180 bits (91), Expect = 3e-043
Identities = 106/111 (95%)
Strand = Plus / Plus
Query: 1806 gaaggagaaaaaggtggagatgttggtggacccagatctacagaatgcctacgaggagat 1865
||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 8 gaaggagaagaaggtggagatgctggtggacccagatctgcagaacgcctacgaggagat 67
Query: 1866 cgaggtggagaaccttatccaggtggcactcctctgcacgcagggctcccc 1916
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 68 cgaggtggagaacctgatccaggtggcactcctctgcacgcagggctcccc 118
>gb|BE594637.1|BE594637 PI1_35_G02.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 565
Score = 180 bits (91), Expect = 3e-043
Identities = 106/111 (95%)
Strand = Plus / Plus
Query: 1806 gaaggagaaaaaggtggagatgttggtggacccagatctacagaatgcctacgaggagat 1865
||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 8 gaaggagaagaaggtggagatgctggtggacccagatctgcagaacgcctacgaggagat 67
Query: 1866 cgaggtggagaaccttatccaggtggcactcctctgcacgcagggctcccc 1916
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 68 cgaggtggagaacctgatccaggtggcactcctctgcacgcagggctcccc 118
>gb|BE598493.1|BE598493 PI1_83_G12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 635
Score = 180 bits (91), Expect = 3e-043
Identities = 106/111 (95%)
Strand = Plus / Plus
Query: 1806 gaaggagaaaaaggtggagatgttggtggacccagatctacagaatgcctacgaggagat 1865
||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 8 gaaggagaagaaggtggagatgctggtggacccagatctgcagaacgcctacgaggagat 67
Query: 1866 cgaggtggagaaccttatccaggtggcactcctctgcacgcagggctcccc 1916
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 68 cgaggtggagaacctgatccaggtggcactcctctgcacgcagggctcccc 118
>gb|BE598817.1|BE598817 PI1_83_G12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 504
Score = 180 bits (91), Expect = 3e-043
Identities = 106/111 (95%)
Strand = Plus / Plus
Query: 1806 gaaggagaaaaaggtggagatgttggtggacccagatctacagaatgcctacgaggagat 1865
||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 8 gaaggagaagaaggtggagatgctggtggacccagatctgcagaacgcctacgaggagat 67
Query: 1866 cgaggtggagaaccttatccaggtggcactcctctgcacgcagggctcccc 1916
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 68 cgaggtggagaacctgatccaggtggcactcctctgcacgcagggctcccc 118
>gb|BG048156.1|BG048156 OV1_28_D04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 611
Score = 172 bits (87), Expect = 8e-041
Identities = 102/107 (95%)
Strand = Plus / Plus
Query: 1810 gagaaaaaggtggagatgttggtggacccagatctacagaatgcctacgaggagatcgag 1869
||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1 gagaagaaggtggagatgctggtggacccagatctgcagaacgcctacgaggagatcgag 60
Query: 1870 gtggagaaccttatccaggtggcactcctctgcacgcagggctcccc 1916
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 61 gtggagaacctgatccaggtggcactcctctgcacgcagggctcccc 107
>gb|BM326208.1|BM326208 PIC1_72_A02.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 130
Score = 161 bits (81), Expect = 3e-037
Identities = 108/117 (92%)
Strand = Plus / Plus
Query: 886 cctccattcaatcctccgtctcccccaacccaatcaactggtgcttctggccctggagca 945
||||||||||||||||| |||||||||||||||||||| ||||| ||| || ||||||||
Sbjct: 11 cctccattcaatcctccatctcccccaacccaatcaaccggtgcctctagcactggagca 70
Query: 946 atcgctggaggtgttgctgctggtgctgcattggtttttgctgttccagcaattgca 1002
||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 71 atcgctggaggcgttgctgctggtgcagcattggtgtttgctgttcctgcaattgca 127
>gb|CL177098.1|CL177098 104_384_10893597_148_31915_045 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893597, DNA
sequence
Length = 747
Score = 159 bits (80), Expect = 1e-036
Identities = 89/92 (96%)
Strand = Plus / Minus
Query: 358 aacaatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcacgtt 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 736 aacaatgtcttgcagagttgggatcccactcttgttaatccatgtacatggttccacgtt 677
Query: 418 acgtgtaacagcgataacagtgttatcagagt 449
|||||||||| |||||||||||||||||||||
Sbjct: 676 acgtgtaacaacgataacagtgttatcagagt 645
Score = 113 bits (57), Expect = 6e-023
Identities = 69/73 (94%)
Strand = Plus / Minus
Query: 450 tgaccttggaaatgcacaattatctggcgtcctagtgccacagcttggtcagctgaaaaa 509
|||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct: 558 tgacctcggaaatgcacaattgtctggtgtcctagtgccacaacttggtcagctgaaaaa 499
Query: 510 tctccaatatttg 522
|||||||||||||
Sbjct: 498 tctccaatatttg 486
>gb|BM328664.1|BM328664 PIC1_25_A08.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 319
Score = 143 bits (72), Expect = 7e-032
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1829 tggtggacccagatctacagaatgcctacgaggagatcgaggtggagaaccttatccagg 1888
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 4 tggtggacccagatctgcagaacgcctacgaggagatcgaggtggagaacctgatccagg 63
Query: 1889 tggcactcctctgcacgcagggctcccc 1916
||| ||||||||||||||||||||||||
Sbjct: 64 tggtactcctctgcacgcagggctcccc 91
>gb|BE597915.1|BE597915 PI1_66_H12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 383
Score = 135 bits (68), Expect = 2e-029
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1829 tggtggacccagatctacagaatgcctacgaggagatcgaggtggagaaccttatccagg 1888
|||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct: 4 tggtggacccagatctgcagaacgcctacgaggagatctaggtggagaacctgatccagg 63
Query: 1889 tggcactcctctgcacgcagggctcccc 1916
|||||||| |||||||||||||||||||
Sbjct: 64 tggcactcttctgcacgcagggctcccc 91
>gb|CW047861.1|CW047861 104_285_10512917_114_30216 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512917, DNA
sequence
Length = 360
Score = 133 bits (67), Expect = 7e-029
Identities = 148/175 (84%)
Strand = Plus / Plus
Query: 1205 tggtagcagtgaaaagactaaaagaggagcgcacacctggtggtgagcttcagtttcaaa 1264
||||||| ||||| ||| |||| ||||| ||||| ||||| || ||||| ||||| ||||
Sbjct: 3 tggtagcggtgaagagattaaaggaggaacgcacccctggcggagagctccagttccaaa 62
Query: 1265 cagaggttgagatgattagcatggcagtgcacaggaaccttctccgacttcgtggtttct 1324
|||| ||||| ||||||||||||||||||||||||| || || || || ||||| ||||
Sbjct: 63 cagaagttgaattgattagcatggcagtgcacaggaatctgcttcggctccgtggattct 122
Query: 1325 gcatgacacctactgaacggttgctggtctacccatacatggctaatggcagtgt 1379
||||||| || || || |||||||| || || ||||||||||||||||| |||||
Sbjct: 123 gcatgactccaacagagcggttgcttgtatatccatacatggctaatgggagtgt 177
>gb|BE601334.1|BE601334 PI1_91_F12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 547
Score = 121 bits (61), Expect = 3e-025
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 1852 gcctacgaggagatcgaggtggagaaccttatccaggtggcactcctctgcacgcagggc 1911
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3 gcctacgaggagatcgaggtggagaacctgatccaggtggcactcctctgcacgcagggc 62
Query: 1912 tcccc 1916
|||||
Sbjct: 63 tcccc 67
>gb|CW148630.1|CW148630 104_547_11142056_116_35013_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142056, DNA
sequence
Length = 425
Score = 113 bits (57), Expect = 6e-023
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 450 tgaccttggaaatgcacaattatctggcgtcctagtgccacagcttggtcagctgaaaaa 509
|||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct: 85 tgacctcggaaatgcacaattgtctggtgtcctagtgccacaacttggtcagctgaaaaa 144
Query: 510 tctccaatatttg 522
|||||||||||||
Sbjct: 145 tctccaatatttg 157
>gb|BE356037.1|BE356037 DG1_121_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 307
Score = 109 bits (55), Expect = 1e-021
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 1846 cagaatgcctacgaggagatcgaggtggagaaccttatccaggtggcactcctctgcacg 1905
||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 6 cagaacgcttacgaggagatcgaggtggagaacctgatccaggtggcactcatctgcacg 65
Query: 1906 cagggctcccc 1916
|||||||||||
Sbjct: 66 cagggctcccc 76
>gb|BE366221.1|BE366221 PI1_31_B07.b2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 223
Score = 103 bits (52), Expect = 6e-020
Identities = 110/130 (84%), Gaps = 10/130 (7%)
Strand = Plus / Plus
Query: 174 ggacccgcgcgcccatgcgtcggtgaggtggt-ggggcccgcttggcgctcntnttggaa 232
||||||||| |||||||||||||||||||||| |||||||||||||||| | |||||
Sbjct: 89 ggacccgcgagcccatgcgtcggtgaggtggtgggggcccgcttggcgcacgatttggac 148
Query: 233 tggcggcggcag---------ggaggtggtgggcggtggtccttgcggtcgcggtgctgc 283
|||||||||| | |||| ||||||||||||||||||||||| ||||||||||
Sbjct: 149 tggcggcggctgcggcggcggggagctggtgggcggtggtccttgcggtggcggtgctgc 208
Query: 284 tcgggccggg 293
|| |||||||
Sbjct: 209 tccggccggg 218
>gb|CW021178.1|CW021178 104_109_10409392_114_30490 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409392, DNA
sequence
Length = 714
Score = 101 bits (51), Expect = 2e-019
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 526 ctttacagcaacaaaataagtggggcaataccccctgaactggggaacctaactaacctt 585
|||||||| ||||| ||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct: 318 ctttacagtaacaacataagtgggccaataccacctgaactggggaacttaactaacctg 259
Query: 586 gtcagtttggatctgtatatgaacaacttctctgg 620
|||||||||||| |||| | ||||||||| ||||
Sbjct: 258 gtcagtttggatttgtacctcaacaacttcactgg 224
>gb|BE598502.1|BE598502 PI1_83_G03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 539
Score = 81.8 bits (41), Expect = 2e-013
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 1865 tcgaggtggagaaccttatccaggtggcactcctctgcacgcagggctcccc 1916
|||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct: 1 tcgaggtggagaacttgatncaggtggcactcctctgcacgcagggctcccc 52
>gb|CD425663.1|CD425663 SA1_13_E03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_13_E03_A002 5', mRNA sequence
Length = 359
Score = 81.8 bits (41), Expect = 2e-013
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 301 gtcgccaacaccgagggcgatgctctatacagcctgcggcagagcttgatagatacgaac 360
||||||||||| ||||| |||||||| |||||||| ||||| ||| ||| ||||| |||
Sbjct: 263 gtcgccaacacggagggtgatgctctttacagcctacggcaaagcctgaaagataacaac 322
Query: 361 aatgtcttgcagagttgggattccactcttgttaatc 397
||||| |||||||||||||| | ||||| |||||||
Sbjct: 323 aatgtgctgcagagttgggatccaactctggttaatc 359
>gb|CF487114.1|CF487114 POL1_41_G11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_41_G11_A002 5', mRNA sequence
Length = 712
Score = 71.9 bits (36), Expect = 2e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 373 agttgggattccactcttgttaatccatgtacatggtttcacgttacgtgtaacagcgat 432
||||||||| ||||||| || || || || || |||||||| ||||| || |||| ||
Sbjct: 492 agttgggatcccactctggtcaacccctgcacttggtttcatgttacctgcaacaatgac 551
Query: 433 aacagtgttatcagagttgaccttggaaatgc 464
|||||||||||||||||||| |||||||||||
Sbjct: 552 aacagtgttatcagagttgatcttggaaatgc 583
>gb|CN138729.1|CN138729 OX1_13_C09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_13_C09_A002 5', mRNA sequence
Length = 770
Score = 71.9 bits (36), Expect = 2e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 373 agttgggattccactcttgttaatccatgtacatggtttcacgttacgtgtaacagcgat 432
||||||||| ||||||| || || || || || |||||||| ||||| || |||| ||
Sbjct: 477 agttgggatcccactctggtcaacccctgcacttggtttcatgttacctgcaacaatgac 536
Query: 433 aacagtgttatcagagttgaccttggaaatgc 464
|||||||||||||||||||| |||||||||||
Sbjct: 537 aacagtgttatcagagttgatcttggaaatgc 568
>gb|CW100957.1|CW100957 104_468_11004380_148_34395_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004380, DNA
sequence
Length = 530
Score = 67.9 bits (34), Expect = 3e-009
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 485 tgccacagcttggtcagctgaaaaatctccaatatttg 522
||||||| ||||||||||||||||||||||||||||||
Sbjct: 530 tgccacaacttggtcagctgaaaaatctccaatatttg 493
>gb|BG273646.1|BG273646 OV2_28_C05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 390
Score = 65.9 bits (33), Expect = 1e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 781 ggctccttttcactcttcacccctataagttttaacaataatccaaatctttgtggccct 840
|||||||||||||||||||||||||| |||||| ||| |||||| ||||||||||||
Sbjct: 329 ggctccttttcactcttcacccctattagttttgccaacaatccaggcctttgtggccct 388
Query: 841 g 841
|
Sbjct: 389 g 389
>gb|CW333249.1|CW333249 104_831_11481839_148_36047_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481839, DNA
sequence
Length = 580
Score = 61.9 bits (31), Expect = 2e-007
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 1255 cagtttcaaacagaggttgagatgattagcatggcagtgcacaggaaccttctccgactt 1314
|||||||| || |||||||||||||| ||| ||||| ||||||| || |||||| | ||
Sbjct: 177 cagtttcagactgaggttgagatgatcagcttggcactgcacagaaatcttctcaggctc 118
Query: 1315 cgtggtttctgcatgacacctactgaacggttgctggtctacccatacatg 1365
||| ||||||||||| | || || ||||||||||||| |||||||||
Sbjct: 117 tatgggttctgcatgaccgccacagagaggttgctggtctatccatacatg 67
>gb|CW364296.1|CW364296 fsbb001f036e13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f036e13, DNA
sequence
Length = 707
Score = 61.9 bits (31), Expect = 2e-007
Identities = 91/111 (81%)
Strand = Plus / Plus
Query: 1255 cagtttcaaacagaggttgagatgattagcatggcagtgcacaggaaccttctccgactt 1314
|||||||| || |||||||||||||| ||| ||||| ||||||| || |||||| | ||
Sbjct: 403 cagtttcagactgaggttgagatgatcagcttggcactgcacagaaatcttctcaggctc 462
Query: 1315 cgtggtttctgcatgacacctactgaacggttgctggtctacccatacatg 1365
||| ||||||||||| | || || ||||||||||||| |||||||||
Sbjct: 463 tatgggttctgcatgaccgccacagagaggttgctggtctatccatacatg 513
>gb|CW482164.1|CW482164 fsbb001f242b21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f242b21, DNA
sequence
Length = 588
Score = 61.9 bits (31), Expect = 2e-007
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 1255 cagtttcaaacagaggttgagatgattagcatggcagtgcacaggaaccttctccgactt 1314
|||||||| || |||||||||||||| ||| ||||| ||||||| || |||||| | ||
Sbjct: 188 cagtttcagactgaggttgagatgatcagcttggcactgcacagaaatcttctcaggctc 129
Query: 1315 cgtggtttctgcatgacacctactgaacggttgctggtctacccatacatg 1365
||| ||||||||||| | || || ||||||||||||| |||||||||
Sbjct: 128 tatgggttctgcatgaccgccacagagaggttgctggtctatccatacatg 78
>gb|CD204459.1|CD204459 HS1_8_B12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_8_B12_A012 3', mRNA sequence
Length = 684
Score = 60.0 bits (30), Expect = 8e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1480 catgatcactgcgatcctaagatcatccatcgggatgtcaaagctgcaaa 1529
||||| || ||| ||||||||||||| ||| |||||||||||||||||||
Sbjct: 2 catgaacaatgcaatcctaagatcattcatagggatgtcaaagctgcaaa 51
>gb|CW028745.1|CW028745 104_256_10499280_114_30399 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499280, DNA
sequence
Length = 589
Score = 54.0 bits (27), Expect = 5e-005
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 1267 gaggttgagatgattagcatggcagtgcacaggaaccttctccgacttcgtggtttctgc 1326
|||||||||||||| ||| ||||| ||||||| || |||||| | || ||| ||||||
Sbjct: 3 gaggttgagatgatcagcttggcactgcacagaaatcttctcaggctctatgggttctgc 62
Query: 1327 atgacacctactgaacggttgctggtctacccatacatg 1365
||||| | || || ||||||||||||| |||||||||
Sbjct: 63 atgaccgccacagagaggttgctggtctatccatacatg 101
>gb|CW459235.1|CW459235 fsbb001f205o01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f205o01, DNA
sequence
Length = 807
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 1255 cagtttcaaacagaggttgagatgattagcatggcagtgcacaggaacct 1304
|||||||| || || || |||||||| ||| |||||||||||||||||||
Sbjct: 227 cagtttcagactgaagtcgagatgatcagcttggcagtgcacaggaacct 178
>gb|BM331493.1|BM331493 PIC1_72_A02.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 542
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1891 gcactcctctgcacgcagggctcccc 1916
||||||||||||||||||||||||||
Sbjct: 1 gcactcctctgcacgcagggctcccc 26
>gb|CD224715.1|CD224715 CCC1_35_E08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_35_E08_A007 5', mRNA sequence
Length = 662
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 1255 cagtttcaaacagaggttgagatgattagcatggcagtgcacaggaacct 1304
|||||||| || || || |||||||| ||| |||||||||||||||||||
Sbjct: 497 cagtttcagactgaagtcgagatgatcagcttggcagtgcacaggaacct 546
>gb|CW364342.1|CW364342 fsbb001f036f13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f036f13, DNA
sequence
Length = 479
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 1267 gaggttgagatgattagcatggcagtgcacaggaaccttctccgacttcgtggtttctgc 1326
|||||||||||||| ||| ||||| ||||||| || |||||||| || ||| ||||||
Sbjct: 415 gaggttgagatgatcagcttggcactgcacagaaatcttctccggctctatgggttctgc 474
Query: 1327 atgac 1331
|||||
Sbjct: 475 atgac 479
>gb|CW444977.1|CW444977 fsbb001f166n12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f166n12, DNA
sequence
Length = 709
Score = 50.1 bits (25), Expect = 8e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 373 agttgggattccactcttgttaatccatgtacatggtttcacgttacgtgtaacagcgat 432
||||||||| ||||||| || || || || || |||||||| ||||| || |||| ||
Sbjct: 271 agttgggatcccactctggtcaacccctgcacttggtttcatgttacctgcaacaatgac 212
Query: 433 aacagtgttatcagagt 449
|||||||||||||||||
Sbjct: 211 aacagtgttatcagagt 195
>gb|BI098066.1|BI098066 IP1_31_F02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 479
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1142 agcacattttaggaagaggtggt 1164
|||||||||||||||||||||||
Sbjct: 266 agcacattttaggaagaggtggt 244
>gb|BM325250.1|BM325250 PIC1_42_G04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 509
Score = 46.1 bits (23), Expect = 0.012
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 1480 catgatcactgcgatcctaagatcatccatcgggatgtcaaagctgcaaat 1530
||||| |||||| |||| ||||||||||| || || ||||| |||||||||
Sbjct: 438 catgagcactgcaatcccaagatcatccaccgtgacgtcaaggctgcaaat 488
>gb|CD211877.1|CD211877 HS1_67_B04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_67_B04_A012 3', mRNA sequence
Length = 713
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1142 agcacattttaggaagaggtggt 1164
|||||||||||||||||||||||
Sbjct: 593 agcacattttaggaagaggtggt 571
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 543,146
Number of Sequences: 832831
Number of extensions: 543146
Number of successful extensions: 151680
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151577
Number of HSP's gapped (non-prelim): 94
length of query: 1916
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1896
effective length of database: 474,703,049
effective search space: 900036980904
effective search space used: 900036980904
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)