BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010462.2.1
(638 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG101760.1|BG101760 RHIZ2_21_A04.g1_A003 Rhizome2 (RHIZ2... 400 e-110
gb|CL173774.1|CL173774 104_377_10891106_116_31793_242 Sorgh... 392 e-107
gb|CL173775.1|CL173775 104_377_10891106_148_31792_242 Sorgh... 392 e-107
gb|CW315423.1|CW315423 104_806_11472351_148_35827_056 Sorgh... 392 e-107
gb|BE362449.1|BE362449 DG1_86_G01.g1_A002 Dark Grown 1 (DG1... 392 e-107
gb|CD226034.1|CD226034 CCC1_43_C09.b1_A007 Callus culture/c... 391 e-107
gb|BG356009.2|BG356009 EM1_19_C06.g1_A002 Embryo 1 (EM1) So... 387 e-106
gb|CW482625.1|CW482625 fsbb001f242n03k0 Sorghum methylation... 363 1e-098
gb|CD463381.1|CD463381 ETH1_44_H01.b1_A002 Ethylene-treated... 315 3e-084
gb|BF587927.1|BF587927 FM1_34_F02.g1_A003 Floral-Induced Me... 305 3e-081
gb|BG557612.1|BG557612 EM1_54_A03.g1_A002 Embryo 1 (EM1) So... 299 2e-079
gb|BG241551.1|BG241551 RHIZ2_17_A01.g1_A003 Rhizome2 (RHIZ2... 297 6e-079
gb|BG355763.2|BG355763 EM1_19_C06.b1_A002 Embryo 1 (EM1) So... 254 9e-066
gb|AW922566.1|AW922566 DG1_45_G07.g1_A002 Dark Grown 1 (DG1... 234 8e-060
gb|CW380095.1|CW380095 fsbb001f059l10k0 Sorghum methylation... 196 2e-048
gb|CW150733.1|CW150733 104_551_11143570_116_36314_043 Sorgh... 180 1e-043
gb|CW460986.1|CW460986 fsbb001f208h04f0 Sorghum methylation... 180 1e-043
gb|CW150734.1|CW150734 104_551_11143570_148_36313_043 Sorgh... 172 3e-041
gb|CW460987.1|CW460987 fsbb001f208h04k0 Sorghum methylation... 172 3e-041
gb|CL164480.1|CL164480 104_358_10807939_114_31814_307 Sorgh... 170 1e-040
gb|CW091315.1|CW091315 104_453_10998477_114_33030_093 Sorgh... 170 1e-040
gb|CW176959.1|CW176959 104_590_11158763_148_36591_046 Sorgh... 170 1e-040
gb|BE358396.1|BE358396 DG1_29_B04.g1_A002 Dark Grown 1 (DG1... 170 1e-040
gb|BE358841.1|BE358841 DG1_32_D06.g1_A002 Dark Grown 1 (DG1... 170 1e-040
gb|BE360494.1|BE360494 DG1_63_B03.g1_A002 Dark Grown 1 (DG1... 170 1e-040
gb|BE918444.1|BE918444 OV1_3_G09.g1_A002 Ovary 1 (OV1) Sorg... 170 1e-040
gb|BE364574.2|BE364574 PI1_15_H09.g1_A002 Pathogen induced ... 170 1e-040
gb|CW439402.1|CW439402 fsbb001f157i10k0 Sorghum methylation... 167 2e-039
gb|BF481310.1|BF481310 FM1_18_D04.g1_A003 Floral-Induced Me... 163 2e-038
gb|BG487962.1|BG487962 RHIZ2_61_D12.g1_A003 Rhizome2 (RHIZ2... 163 2e-038
gb|BG558058.1|BG558058 RHIZ2_66_B02.g1_A003 Rhizome2 (RHIZ2... 163 2e-038
gb|DN551872.1|DN551872 pSPR-RT-MR-H1_G04_C276 pSPR Sorghum ... 163 2e-038
gb|BE367374.1|BE367374 PI1_4_E12.g1_A002 Pathogen induced 1... 151 9e-035
gb|AW282772.1|AW282772 LG1_290_F07.g1_A002 Light Grown 1 (L... 143 2e-032
gb|CW221367.1|CW221367 104_656_11197867_116_37452_074 Sorgh... 115 5e-024
gb|AW677701.1|AW677701 WS1_10_H08.g1_A002 Water-stressed 1 ... 107 1e-021
gb|BE359207.1|BE359207 DG1_39_C05.g1_A002 Dark Grown 1 (DG1... 107 1e-021
gb|BE361256.1|BE361256 DG1_70_D10.g1_A002 Dark Grown 1 (DG1... 107 1e-021
gb|BE366341.1|BE366341 PI1_32_D08.g1_A002 Pathogen induced ... 107 1e-021
gb|BG047581.1|BG047581 OV1_25_F09.b1_A002 Ovary 1 (OV1) Sor... 107 1e-021
gb|BG047939.1|BG047939 OV1_25_F09.g1_A002 Ovary 1 (OV1) Sor... 107 1e-021
gb|BG932956.1|BG932956 DG1_69_D11.g1_A002 Dark Grown 1 (DG1... 107 1e-021
gb|BG948233.1|BG948233 IP1_10_H11.g1_A002 Immature pannicle... 107 1e-021
gb|BG948544.1|BG948544 IP1_10_H11.b1_A002 Immature pannicle... 107 1e-021
gb|CW246218.1|CW246218 104_707_11221250_116_35083_013 Sorgh... 103 2e-020
gb|CW257415.1|CW257415 104_722_11227323_116_35152_002 Sorgh... 101 8e-020
gb|BG102506.1|BG102506 RHIZ2_33_H09.g1_A003 Rhizome2 (RHIZ2... 100 3e-019
gb|CW091307.1|CW091307 104_453_10998472_116_33035_062 Sorgh... 94 2e-017
gb|CW389640.1|CW389640 fsbb001f074o21k0 Sorghum methylation... 94 2e-017
gb|CW442302.1|CW442302 fsbb001f161o10k0 Sorghum methylation... 94 2e-017
gb|CW457821.1|CW457821 fsbb001f203m21f0 Sorghum methylation... 94 2e-017
gb|CW474770.1|CW474770 fsbb001f230n01k0 Sorghum methylation... 94 2e-017
gb|BG273178.1|BG273178 OV2_27_G08.g1_A002 Ovary 2 (OV2) Sor... 92 7e-017
gb|CW234030.1|CW234030 104_687_11213762_148_37379_005 Sorgh... 70 3e-010
gb|CW314845.1|CW314845 104_805_11472043_148_35821_070 Sorgh... 70 3e-010
gb|CX619982.1|CX619982 GABR1_49_D04.b1_A002 GA- or brassino... 66 4e-009
gb|BF704912.1|BF704912 FM1_46_B04.g2_A003 Floral-Induced Me... 62 7e-008
gb|BG052269.1|BG052269 RHIZ2_12_D09.g1_A003 Rhizome2 (RHIZ2... 62 7e-008
gb|CW221368.1|CW221368 104_656_11197867_148_37453_074 Sorgh... 60 3e-007
gb|CW297733.1|CW297733 104_780_11462198_116_35649_063 Sorgh... 60 3e-007
gb|CW297734.1|CW297734 104_780_11462198_148_35653_063 Sorgh... 60 3e-007
gb|CW322471.1|CW322471 104_816_11476115_148_35952_044 Sorgh... 60 3e-007
gb|CW436719.1|CW436719 fsbb001f153h11k0 Sorghum methylation... 60 3e-007
gb|AW565319.1|AW565319 LG1_342_A09.g1_A002 Light Grown 1 (L... 60 3e-007
gb|AW677269.1|AW677269 DG1_6_C02.g1_A002 Dark Grown 1 (DG1)... 60 3e-007
gb|AW745482.1|AW745482 WS1_35_G01.b1_A002 Water-stressed 1 ... 60 3e-007
gb|AW922837.1|AW922837 DG1_46_C11.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|AW923056.1|AW923056 DG1_48_F12.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE355038.1|BE355038 DG1_10_B12.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE355327.1|BE355327 DG1_114_H09.b1_A002 Dark Grown 1 (DG... 60 3e-007
gb|BE355405.1|BE355405 DG1_114_H09.b2_A002 Dark Grown 1 (DG... 60 3e-007
gb|BE355461.1|BE355461 DG1_114_C11.g1_A002 Dark Grown 1 (DG... 60 3e-007
gb|BE355472.1|BE355472 DG1_114_H09.g1_A002 Dark Grown 1 (DG... 60 3e-007
gb|BE355572.1|BE355572 DG1_115_C11.b1_A002 Dark Grown 1 (DG... 60 3e-007
gb|BE356652.1|BE356652 DG1_126_A06.g1_A002 Dark Grown 1 (DG... 60 3e-007
gb|BE358732.1|BE358732 DG1_31_D02.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE359598.1|BE359598 DG1_54_H12.g2_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE360126.1|BE360126 DG1_61_D02.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE360152.1|BE360152 DG1_61_D02.g2_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE360475.1|BE360475 DG1_63_E06.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE360990.1|BE360990 DG1_68_E08.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE361202.1|BE361202 DG1_70_F03.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE367050.1|BE367050 PI1_42_D08.g2_A002 Pathogen induced ... 60 3e-007
gb|BE592930.1|BE592930 WS1_92_B10.b1_A002 Water-stressed 1 ... 60 3e-007
gb|BF585486.1|BF585486 FM1_23_B02.g1_A003 Floral-Induced Me... 60 3e-007
gb|BG054269.1|BG054269 OV2_4_D10.g1_A002 Ovary 2 (OV2) Sorg... 60 3e-007
gb|BG103102.1|BG103102 RHIZ2_18_B11.g1_A003 Rhizome2 (RHIZ2... 60 3e-007
gb|BG239851.1|BG239851 OV1_29_G11.g1_A002 Ovary 1 (OV1) Sor... 60 3e-007
gb|BG356951.1|BG356951 OV2_12_A10.g1_A002 Ovary 2 (OV2) Sor... 60 3e-007
gb|BG412632.1|BG412632 OV2_36_H06.g1_A002 Ovary 2 (OV2) Sor... 60 3e-007
gb|BG932930.1|BG932930 DG1_69_B03.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BG932961.1|BG932961 DG1_69_E04.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BG947157.1|BG947157 IP1_3_C03.g1_A002 Immature pannicle ... 60 3e-007
gb|BI075504.1|BI075504 IP1_21_D02.g1_A002 Immature pannicle... 60 3e-007
gb|BI099244.1|BI099244 IP1_40_D02.g1_A002 Immature pannicle... 60 3e-007
gb|BI211453.1|BI211453 IP1_57_A06.g1_A002 Immature pannicle... 60 3e-007
gb|BI245526.1|BI245526 IP1_66_E07.g1_A002 Immature pannicle... 60 3e-007
gb|BM318326.1|BM318326 PI1_77_C08.g9_A002 Pathogen induced ... 60 3e-007
gb|CD220727.1|CD220727 CCC1_69_D11.b1_A007 Callus culture/c... 60 3e-007
gb|CD221354.1|CD221354 CCC1_54_F07.b1_A007 Callus culture/c... 60 3e-007
gb|CD223110.1|CD223110 CCC1_26_F03.b1_A007 Callus culture/c... 60 3e-007
gb|CD224320.1|CD224320 CCC1_33_H03.b1_A007 Callus culture/c... 60 3e-007
gb|CD224791.1|CD224791 CCC1_36_B03.b1_A007 Callus culture/c... 60 3e-007
gb|CD426221.1|CD426221 SA1_19_A02.b1_A002 Salicylic acid-tr... 60 3e-007
gb|CD426231.1|CD426231 SA1_19_D09.b1_A002 Salicylic acid-tr... 60 3e-007
gb|CD431991.1|CD431991 ETH1_12_C08.b1_A002 Ethylene-treated... 60 3e-007
gb|CF072290.1|CF072290 FE1_7_F11.b1_A002 Iron-deficient see... 60 3e-007
gb|CF072697.1|CF072697 FE1_25_E09.b1_A002 Iron-deficient se... 60 3e-007
gb|CF074261.1|CF074261 FE1_23_H08.b1_A002 Iron-deficient se... 60 3e-007
gb|CF427528.1|CF427528 PH1_16_G05.b1_A002 Phosphorous-defic... 60 3e-007
gb|CF431298.1|CF431298 NIT1_5_B12.b1_A002 Nitrogen-deficien... 60 3e-007
gb|CN125016.1|CN125016 RHOH1_8_H01.b1_A002 Acid- and alkali... 60 3e-007
gb|CN126243.1|CN126243 RHOH1_16_B03.b1_A002 Acid- and alkal... 60 3e-007
gb|CN129246.1|CN129246 RHOH1_34_G08.b3_A002 Acid- and alkal... 60 3e-007
gb|CN129330.1|CN129330 RHOH1_34_G08.g1_A002 Acid- and alkal... 60 3e-007
gb|CN131413.1|CN131413 RHOH1_48_A02.b1_A002 Acid- and alkal... 60 3e-007
gb|CN138952.1|CN138952 OX1_15_D09.b1_A002 Oxidatively-stres... 60 3e-007
gb|CX608397.1|CX608397 ANR1_38_H10.b1_A002 Anaerobic roots ... 60 3e-007
gb|CW246219.1|CW246219 104_707_11221250_116_37604_013 Sorgh... 58 1e-006
gb|BG049661.1|BG049661 EM1_7_D05.g1_A002 Embryo 1 (EM1) Sor... 58 1e-006
gb|CW234029.1|CW234029 104_687_11213762_116_37380_005 Sorgh... 56 4e-006
gb|BF656584.1|BF656584 FM1_51_H09.g1_A003 Floral-Induced Me... 54 2e-005
gb|BG158592.1|BG158592 RHIZ2_42_E08.g1_A003 Rhizome2 (RHIZ2... 54 2e-005
gb|CW220801.1|CW220801 104_655_11197555_116_37153_070 Sorgh... 52 6e-005
gb|CW220802.1|CW220802 104_655_11197555_148_37154_070 Sorgh... 52 6e-005
gb|CX622505.1|CX622505 GABR1_64_H04.b2_A002 GA- or brassino... 52 6e-005
gb|AW565796.1|AW565796 LG1_349_B05.g1_A002 Light Grown 1 (L... 48 0.001
gb|AW285466.2|AW285466 LG1_251_H09.g1_A002 Light Grown 1 (L... 46 0.004
gb|BE362573.1|BE362573 DG1_87_D07.g1_A002 Dark Grown 1 (DG1... 46 0.004
gb|BG159391.1|BG159391 OV2_7_C05.g1_A002 Ovary 2 (OV2) Sorg... 46 0.004
gb|BI351078.1|BI351078 IP1_69_E08.g1_A002 Immature pannicle... 46 0.004
gb|BI351177.1|BI351177 IP1_70_H04.g1_A002 Immature pannicle... 46 0.004
gb|BE366988.1|BE366988 PI1_42_D08.g1_A002 Pathogen induced ... 44 0.016
gb|BE362992.2|BE362992 DG1_92_F01.g1_A002 Dark Grown 1 (DG1... 44 0.016
gb|CW323394.1|CW323394 104_817_11476608_148_35963_088 Sorgh... 42 0.061
gb|CW409701.1|CW409701 fsbb001f104b24k0 Sorghum methylation... 42 0.061
gb|BZ626120.1|BZ626120 ih43e02.g1 WGS-SbicolorF (DH5a methy... 40 0.24
gb|BG947536.1|BG947536 IP1_5_F11.g1_A002 Immature pannicle ... 40 0.24
>gb|BG101760.1|BG101760 RHIZ2_21_A04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 525
Score = 400 bits (202), Expect = e-110
Identities = 285/308 (92%), Gaps = 5/308 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgc-gcgntgcccaaggaggtggaggcn- 61
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 154 ccaaggtggccgagttcgagcagcaggtccgcgccgcgctgcccaaggaggtggaggccg 213
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || || ||||||||||||||| ||| ||||| ||||||||||||| |||||||||||
Sbjct: 214 cgcgcgccgccgtggagagcggcaaccctctggtgcccaacaggatcaaggagtgccggt 273
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 274 cctacccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgaga 333
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| | |||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct: 334 agacgaggt-cgcccggcgaggagctgaacaaggtgctggtgg-ccatcaaccagcgcaa 391
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 392 gca-catcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccgctct 450
Query: 302 gctgagct 309
||||||||
Sbjct: 451 gctgagct 458
>gb|CL173774.1|CL173774 104_377_10891106_116_31793_242 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891106, DNA
sequence
Length = 778
Score = 392 bits (198), Expect = e-107
Identities = 284/308 (92%), Gaps = 5/308 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgc-gcgntgcccaaggaggtggaggcn- 61
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 325 ccaaggtggccgagttcgagcagcaggtccgcgccgcgctgcccaaggaggtggaggccg 384
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || || ||||||||||||||| ||| ||||| ||||||||||||| |||||||||||
Sbjct: 385 cgcgcgccgccgtggagagcggcaaccctctggtgcccaacaggatcaaggagtgccggt 444
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 cctacccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgaga 504
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| | |||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct: 505 agacgaggt-cgcccggcgaggagctgaacaaggtgctggtgg-ccatcaaccagcgcaa 562
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 563 gca-cgtcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccgctct 621
Query: 302 gctgagct 309
||||||||
Sbjct: 622 gctgagct 629
Score = 67.9 bits (34), Expect = 1e-009
Identities = 81/96 (84%), Gaps = 8/96 (8%)
Strand = Plus / Plus
Query: 348 aaaaacaaaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttaca 399
|||||| |||||| ||||||||||||||| |||||||||||| || | ||||||
Sbjct: 680 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttaca 739
Query: 400 accagactagcagaagatgctctctatatctaccgt 435
||| |||||||||||||| |||||||||| ||||||
Sbjct: 740 acccgactagcagaagatactctctatatttaccgt 775
>gb|CL173775.1|CL173775 104_377_10891106_148_31792_242 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891106, DNA
sequence
Length = 725
Score = 392 bits (198), Expect = e-107
Identities = 284/308 (92%), Gaps = 5/308 (1%)
Strand = Plus / Minus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgc-gcgntgcccaaggaggtggaggcn- 61
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 491 ccaaggtggccgagttcgagcagcaggtccgcgccgcgctgcccaaggaggtggaggccg 432
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || || ||||||||||||||| ||| ||||| ||||||||||||| |||||||||||
Sbjct: 431 cgcgcgccgccgtggagagcggcaaccctctggtgcccaacaggatcaaggagtgccggt 372
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 371 cctacccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgaga 312
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| | |||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct: 311 agacgaggt-cgcccggcgaggagctgaacaaggtgctggtgg-ccatcaaccagcgcaa 254
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 253 gca-cgtcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccgctct 195
Query: 302 gctgagct 309
||||||||
Sbjct: 194 gctgagct 187
Score = 97.6 bits (49), Expect = 1e-018
Identities = 118/140 (84%), Gaps = 12/140 (8%)
Strand = Plus / Minus
Query: 348 aaaaacaaaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttaca 399
|||||| |||||| ||||||||||||||| |||||||||||| || | ||||||
Sbjct: 136 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttaca 77
Query: 400 accagactagcagaagatgctctctatatctaccgtcgccttgtattattagtagctgaa 459
|||||||||||||||||| |||||||||| |||||| |||||||| || ||||||||
Sbjct: 76 accagactagcagaagatactctctatatttaccgttgccttgtactactagtagct--- 20
Query: 460 gtaagttcatgtgaatgttg 479
||||||||||||||||||
Sbjct: 19 -aaagttcatgtgaatgttg 1
>gb|CW315423.1|CW315423 104_806_11472351_148_35827_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472351, DNA
sequence
Length = 651
Score = 392 bits (198), Expect = e-107
Identities = 284/308 (92%), Gaps = 5/308 (1%)
Strand = Plus / Minus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgc-gcgntgcccaaggaggtggaggcn- 61
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 406 ccaaggtggccgagttcgagcagcaggtccgcgccgcgctgcccaaggaggtggaggccg 347
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || || ||||||||||||||| ||| ||||| ||||||||||||| |||||||||||
Sbjct: 346 cgcgcgccgccgtggagagcggcaaccctctggtgcccaacaggatcaaggagtgccggt 287
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 286 cctacccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgaga 227
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| | |||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct: 226 agacgaggt-cgcccggcgaggagctgaacaaggtgctggtgg-ccatcaaccagcgcaa 169
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 168 gca-cgtcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccgctct 110
Query: 302 gctgagct 309
||||||||
Sbjct: 109 gctgagct 102
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/43 (90%), Gaps = 2/43 (4%)
Strand = Plus / Minus
Query: 348 aaaaacaaaagtatagcggctcaagac--agcgtttcaagatc 388
|||||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 51 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatc 9
>gb|BE362449.1|BE362449 DG1_86_G01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 392 bits (198), Expect = e-107
Identities = 284/308 (92%), Gaps = 5/308 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgc-gcgntgcccaaggaggtggaggcn- 61
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 10 ccaaggtggccgagttcgagcagcaggtccgcgccgcgctgcccaaggaggtggaggccg 69
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || || ||||||||||||||| ||| ||||| ||||||||||||| |||||||||||
Sbjct: 70 cgcgcgccgccgtggagagcggcaaccctctggtgcccaacaggatcaaggagtgccggt 129
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 130 cctacccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgaga 189
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| | |||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct: 190 agacgaggt-cgcccggcgaggagctgaacaaggtgctggtgg-ccatcaaccagcgcaa 247
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 248 gca-cgtcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccgctct 306
Query: 302 gctgagct 309
||||||||
Sbjct: 307 gctgagct 314
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/43 (90%), Gaps = 2/43 (4%)
Strand = Plus / Plus
Query: 348 aaaaacaaaagtatagcggctcaagac--agcgtttcaagatc 388
|||||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 365 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatc 407
>gb|CD226034.1|CD226034 CCC1_43_C09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_43_C09_A007 3', mRNA sequence
Length = 614
Score = 391 bits (197), Expect = e-107
Identities = 283/307 (92%), Gaps = 5/307 (1%)
Strand = Plus / Plus
Query: 5 caaggtggccgagttcgagcagcaggtccgcgc-gcgntgcccaaggaggtggaggcn-c 62
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct: 1 caaggtggccgagttcgagcagcaggtccgcgccgcgctgcccaaggaggtggaggccgc 60
Query: 63 ncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggtc 122
|| || ||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||
Sbjct: 61 gcgcgccgccgtggagagcggcaaccctctggtgcccaacaggatcaaggagtgccggtc 120
Query: 123 ctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagag 182
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 121 ctacccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgagaa 180
Query: 183 gaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaag 242
||| |||| | |||||||||||||| ||||||||||| |||| |||||||||||||||||
Sbjct: 181 gacgaggt-cgcccggcgaggagctgaacaaggtgctggtgg-ccatcaaccagcgcaag 238
Query: 243 caccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctctg 302
|| | ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 239 ca-cgtcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccgctctg 297
Query: 303 ctgagct 309
|||||||
Sbjct: 298 ctgagct 304
Score = 167 bits (84), Expect = 2e-039
Identities = 191/225 (84%), Gaps = 15/225 (6%)
Strand = Plus / Plus
Query: 348 aaaaacaaaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttaca 399
|||||| |||||| ||||||||||||||| |||||||||||| || | ||||||
Sbjct: 355 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttaca 414
Query: 400 accagactagcagaagatgctctctatatctaccgtcgccttgtattattagtagctgaa 459
|||||||||||||||||| |||||||||| |||||| |||||||| || ||||||||
Sbjct: 415 accagactagcagaagatactctctatatttaccgttgccttgtactactagtagct--- 471
Query: 460 gtaagttcatgtgaatgttgtcgtg---ttcccgcagctgcgacgccatggcgtgcgacg 516
||||||||||||||||||| ||| |||||||||||||||||||||||| ||| | |
Sbjct: 472 -aaagttcatgtgaatgttgttgtgttcttcccgcagctgcgacgccatggcctgcaatg 530
Query: 517 tgcgcgttcttggctgtcgcagctgctgaaacttttgatggtttt 561
|| |||||||||||| |||||| ||||||||||||||||||||
Sbjct: 531 cgcatgttcttggctgttgcagctactgaaacttttgatggtttt 575
>gb|BG356009.2|BG356009 EM1_19_C06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 387 bits (195), Expect = e-106
Identities = 283/308 (91%), Gaps = 5/308 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgc-gcgntgcccaaggaggtggaggcn- 61
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 10 ccaaggtggcngagttcgagcagcaggtccgcgccgcgctgcccaaggaggtggaggccg 69
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || || ||||||||||||||| ||| ||||| ||||||||||||| |||||||||||
Sbjct: 70 cgcgcgccgccgtggagagcggcaaccctctggtgcccaacaggatcaaggagtgccggt 129
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 130 cctacccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgaga 189
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| | |||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct: 190 agacgaggt-cgcccggcgaggagctgaacaaggtgctggtgg-ccatcaaccagcgcaa 247
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 248 gca-cgtcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccgctct 306
Query: 302 gctgagct 309
||||||||
Sbjct: 307 gctgagct 314
Score = 105 bits (53), Expect = 5e-021
Identities = 125/148 (84%), Gaps = 12/148 (8%)
Strand = Plus / Plus
Query: 348 aaaaacaaaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttaca 399
|||||| |||||| ||||||||||||||| |||||||||||| || | ||||||
Sbjct: 365 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttaca 424
Query: 400 accagactagcagaagatgctctctatatctaccgtcgccttgtattattagtagctgaa 459
|||||||||||||||||| |||||||||| |||||| |||||||| || ||||||||
Sbjct: 425 accagactagcagaagatactctctatatttaccgttgccttgtactactagtagct--- 481
Query: 460 gtaagttcatgtgaatgttgtcgtgttc 487
||||||||||||||||||| ||||||
Sbjct: 482 -aaagttcatgtgaatgttgttgtgttc 508
>gb|CW482625.1|CW482625 fsbb001f242n03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f242n03, DNA
sequence
Length = 636
Score = 363 bits (183), Expect = 1e-098
Identities = 273/297 (91%), Gaps = 7/297 (2%)
Strand = Plus / Minus
Query: 16 agttcgagcagcaggtccgcg-cgcgntgcccaaggaggtggaggcncncgngcg--ncc 72
||||||||||||||||||||| |||| ||||||||||||||||||| | || ||| ||
Sbjct: 636 agttcgagcagcaggtccgcgccgcgctgcccaaggaggtggaggc-cgcgcgcgtcgcc 578
Query: 73 gtggagagcggcanccccctggtccccaacaggatcagggagtgccggtcctacccgctg 132
||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 577 gtggagagcggcaaccctctggtgcccaacaggatcaaggagtgccggtcctacccgctg 518
Query: 133 taccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaggaccaggtcc 192
|||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| |
Sbjct: 517 taccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgagaagacgaggt-c 459
Query: 193 ccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaagcaccatcgac 252
|||||||||||||| ||||||||||| |||| ||||||||||||||||||| | |||||
Sbjct: 458 gcccggcgaggagctgaacaaggtgctggtgg-ccatcaaccagcgcaagca-cgtcgac 401
Query: 253 ccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctctgctgagct 309
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 400 ccgctgctcgagtgcctcaaggagtggaacggcgagccactgccgctctgctgagct 344
Score = 167 bits (84), Expect = 2e-039
Identities = 191/225 (84%), Gaps = 15/225 (6%)
Strand = Plus / Minus
Query: 348 aaaaacaaaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttaca 399
|||||| |||||| ||||||||||||||| |||||||||||| || | ||||||
Sbjct: 293 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttaca 234
Query: 400 accagactagcagaagatgctctctatatctaccgtcgccttgtattattagtagctgaa 459
|||||||||||||||||| |||||||||| |||||| |||||||| || ||||||||
Sbjct: 233 accagactagcagaagatactctctatatttaccgttgccttgtactactagtagct--- 177
Query: 460 gtaagttcatgtgaatgttgtcgtg---ttcccgcagctgcgacgccatggcgtgcgacg 516
||||||||||||||||||| ||| |||||||||||||||||||||||| ||| | |
Sbjct: 176 -aaagttcatgtgaatgttgttgtgttcttcccgcagctgcgacgccatggcctgcaatg 118
Query: 517 tgcgcgttcttggctgtcgcagctgctgaaacttttgatggtttt 561
|| |||||||||||| |||||| ||||||||||||||||||||
Sbjct: 117 cgcatgttcttggctgttgcagctactgaaacttttgatggtttt 73
>gb|CD463381.1|CD463381 ETH1_44_H01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_44_H01_A002 3', mRNA sequence
Length = 633
Score = 315 bits (159), Expect = 3e-084
Identities = 242/266 (90%), Gaps = 4/266 (1%)
Strand = Plus / Plus
Query: 45 ccaaggaggtggaggcn-cncgngcgnccgtggagagcggcanccccctggtccccaaca 103
|||||||||||||||| | || || ||||||||||||||| ||| ||||| ||||||
Sbjct: 1 ccaaggaggtggaggccgcgcgcgcccccgtggagagcggcaaccctctggtgtccaaca 60
Query: 104 ggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccg 163
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccc 120
Query: 164 agtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgctcgtg 223
|||||||||||||||||| ||| |||| | |||||||||||||| ||||||||||| |||
Sbjct: 121 agtacctgaccggcgagaagacgaggt-cgcccggcgaggagctgaacaaggtgctggtg 179
Query: 224 gcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacg 283
| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 180 g-ccatcaaccagcgcaagca-cgtcgacccgctgctcgagtgcctcaaggagtggaacg 237
Query: 284 gcgcgcccctgccgctctgctgagct 309
||| ||| ||||||||||| ||||||
Sbjct: 238 gcgagccactgccgctctgttgagct 263
Score = 167 bits (84), Expect = 2e-039
Identities = 191/225 (84%), Gaps = 15/225 (6%)
Strand = Plus / Plus
Query: 348 aaaaacaaaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttaca 399
|||||| |||||| ||||||||||||||| |||||||||||| || | ||||||
Sbjct: 314 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttaca 373
Query: 400 accagactagcagaagatgctctctatatctaccgtcgccttgtattattagtagctgaa 459
|||||||||||||||||| |||||||||| |||||| |||||||| || ||||||||
Sbjct: 374 accagactagcagaagatactctctatatttaccgttgccttgtactactagtagct--- 430
Query: 460 gtaagttcatgtgaatgttgtcgtg---ttcccgcagctgcgacgccatggcgtgcgacg 516
||||||||||||||||||| ||| |||||||||||||||||||||||| ||| | |
Sbjct: 431 -aaagttcatgtgaatgttgttgtgttcttcccgcagctgcgacgccatggcctgcaatg 489
Query: 517 tgcgcgttcttggctgtcgcagctgctgaaacttttgatggtttt 561
|| |||||||||||| |||||| ||||||||||||||||||||
Sbjct: 490 cgcatgttcttggctgttgcagctactgaaacttttgatggtttt 534
>gb|BF587927.1|BF587927 FM1_34_F02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 462
Score = 305 bits (154), Expect = 3e-081
Identities = 205/218 (94%), Gaps = 3/218 (1%)
Strand = Plus / Plus
Query: 92 tggtccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgagg 151
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tggtgcccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgagg 64
Query: 152 aggtcggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaac 211
||||||||||| |||||||||||||||||| ||| |||| | |||||||||||||| |||
Sbjct: 65 aggtcggcacccagtacctgaccggcgagaagacgaggt-cgcccggcgaggagctgaac 123
Query: 212 aaggtgctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctca 271
|||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 124 aaggtgctggtgg-ccatcaaccagcgcaagca-catcgacccgctgctcgagtgcctca 181
Query: 272 aggagtggaacggcgcgcccctgccgctctgctgagct 309
||||||||||||||| ||| ||||||||||||||||||
Sbjct: 182 aggagtggaacggcgagccactgccgctctgctgagct 219
Score = 129 bits (65), Expect = 3e-028
Identities = 165/197 (83%), Gaps = 16/197 (8%)
Strand = Plus / Plus
Query: 348 aaaaacaaaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttaca 399
|||||| |||||| ||||||||||||||| |||||||||||| || | ||||||
Sbjct: 270 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttaca 329
Query: 400 accagactagcagaagatgctctctatatctaccgtcgccttgtattattagtagctgaa 459
|||||||||||||||||| |||||||||| |||||| |||||||| || ||||||||
Sbjct: 330 accagactagcagaagatactctctatatttaccgttgccttgtactactagtagct--- 386
Query: 460 gtaagttcatgtgaatgttgtcgtgttc----ccgcagctgcgacgccatggcgtgcgac 515
||||||||||||||||||| |||||| ||||||||||||||||||||| ||| |
Sbjct: 387 -aaagttcatgtgaatgttgttgtgttcttcaccgcagctgcgacgccatggcctgcaat 445
Query: 516 gtgcgcgttcttggctg 532
|||| |||||||||||
Sbjct: 446 gtgcatgttcttggctg 462
>gb|BG557612.1|BG557612 EM1_54_A03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 508
Score = 299 bits (151), Expect = 2e-079
Identities = 205/219 (93%), Gaps = 3/219 (1%)
Strand = Plus / Plus
Query: 91 ctggtccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgag 150
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctggtgcccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgag 64
Query: 151 gaggtcggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaa 210
|||||||||||| |||||||||||||||||| ||| |||| | |||||||||||||| ||
Sbjct: 65 gaggtcggcacccagtacctgaccggcgagaagacgaggt-cgcccggcgaggagctgaa 123
Query: 211 caaggtgctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctc 270
||||||||| |||| ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 124 caaggtgctggtgg-ccatcaaccagcgcaagca-cgtcgacccgctgctcgagtgcctc 181
Query: 271 aaggagtggaacggcgcgcccctgccgctctgctgagct 309
|||||||||||||||| ||| ||||||||||||||||||
Sbjct: 182 aaggagtggaacggcgagccactgccgctctgctgagct 220
Score = 163 bits (82), Expect = 2e-038
Identities = 191/226 (84%), Gaps = 16/226 (7%)
Strand = Plus / Plus
Query: 348 aaaaacaaaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttaca 399
|||||| |||||| ||||||||||||||| |||||||||||| || | ||||||
Sbjct: 271 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttaca 330
Query: 400 accagactagcagaagatgctctctatatctaccgtcgccttgtattattagtagctgaa 459
|||||||||||||||||| |||||||||| |||||| |||||||| || ||||||||
Sbjct: 331 accagactagcagaagatactctctatatttaccgttgccttgtactactagtagct--- 387
Query: 460 gtaagttcatgtgaatgttgtcgtgtt----cccgcagctgcgacgccatggcgtgcgac 515
||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |
Sbjct: 388 -aaagttcatgtgaatgttgttgtgttcttccccgcagctgcgacgccatggcctgcaat 446
Query: 516 gtgcgcgttcttggctgtcgcagctgctgaaacttttgatggtttt 561
| || |||||||||||| |||||| ||||||||||||||||||||
Sbjct: 447 gcgcatgttcttggctgttgcagctactgaaacttttgatggtttt 492
>gb|BG241551.1|BG241551 RHIZ2_17_A01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 388
Score = 297 bits (150), Expect = 6e-079
Identities = 204/218 (93%), Gaps = 3/218 (1%)
Strand = Plus / Plus
Query: 92 tggtccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgagg 151
|||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5 tggtgcccaacaggatcaaggagtgccggtcgtacccgctgtaccggttcgtgcgcgagg 64
Query: 152 aggtcggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaac 211
||||||||||| |||||||||||||||||| ||| |||| | |||||||||||||| |||
Sbjct: 65 aggtcggcacccagtacctgaccggcgagaagacgaggt-cgcccggcgaggagctgaac 123
Query: 212 aaggtgctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctca 271
|||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 124 aaggtgctggtgg-ccatcaaccagcgcaagca-catcgacccgctgctcgagtgcctca 181
Query: 272 aggagtggaacggcgcgcccctgccgctctgctgagct 309
||||||||||||||| ||| ||||||||||||||||||
Sbjct: 182 aggagtggaacggcgagccactgccgctctgctgagct 219
Score = 93.7 bits (47), Expect = 2e-017
Identities = 100/117 (85%), Gaps = 8/117 (6%)
Strand = Plus / Plus
Query: 348 aaaaacaaaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttaca 399
|||||| |||||| ||||||||||||||| |||||||||||| || | ||||||
Sbjct: 270 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttaca 329
Query: 400 accagactagcagaagatgctctctatatctaccgtcgccttgtattattagtagct 456
|||||||||||||||||| |||||||||| |||||| |||||||| || ||||||||
Sbjct: 330 accagactagcagaagatactctctatatttaccgttgccttgtactactagtagct 386
>gb|BG355763.2|BG355763 EM1_19_C06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 495
Score = 254 bits (128), Expect = 9e-066
Identities = 175/190 (92%), Gaps = 2/190 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgc-gcgntgcccaaggaggtggaggcn- 61
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 304 ccaaggtggccgagttcgagcagcaggtccgcgccgcgctgcccaaggaggtggaggccg 363
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || || ||||||||||||||| ||| ||||| ||||||||||||| |||||||||||
Sbjct: 364 cgcgcgccgccgtggagagcggcaaccctctggtgcccaacaggatcaaggagtgccggt 423
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 424 cctacccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgaga 483
Query: 182 ggaccaggtc 191
||| |||||
Sbjct: 484 agacgaggtc 493
>gb|AW922566.1|AW922566 DG1_45_G07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 309
Score = 234 bits (118), Expect = 8e-060
Identities = 166/178 (93%), Gaps = 3/178 (1%)
Strand = Plus / Plus
Query: 132 gtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaggaccaggtc 191
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||
Sbjct: 1 gtaccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgagaagacgaggtc 60
Query: 192 cccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaagcaccatcga 251
||| ||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||
Sbjct: 61 gccc-ggcgaggagctgaacaaggtgctggtggcc-atcaaccagcgcaagcacg-tcga 117
Query: 252 cccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctctgctgagct 309
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 118 cccgctgctcgagtgcctcaaggagtggaacggcgagccactgccgctctgctgagct 175
Score = 60.0 bits (30), Expect = 3e-007
Identities = 71/84 (84%), Gaps = 8/84 (9%)
Strand = Plus / Plus
Query: 348 aaaaacaaaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttaca 399
|||||| |||||| ||||||||||||||| |||||||||||| || | ||||||
Sbjct: 226 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttaca 285
Query: 400 accagactagcagaagatgctctc 423
|||||||||||||||||| |||||
Sbjct: 286 accagactagcagaagatactctc 309
>gb|CW380095.1|CW380095 fsbb001f059l10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059l10, DNA
sequence
Length = 659
Score = 196 bits (99), Expect = 2e-048
Identities = 156/171 (91%), Gaps = 3/171 (1%)
Strand = Plus / Minus
Query: 139 ttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaggaccaggtccccccgg 198
|||||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||| |
Sbjct: 659 ttcgtgcgcgaggaggtcggcacccagtacctgaccggcgagaagacgaggtcgccc-gc 601
Query: 199 cgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaagcaccatcgacccgctg 258
||||||||| | ||||||||| |||||| |||| ||||||||||||| |||||||||||
Sbjct: 600 cgaggagctgatcaaggtgctggtggcc-atcagccagcgcaagcacg-tcgacccgctg 543
Query: 259 ctcgagtgcctcaaggagtggaacggcgcgcccctgccgctctgctgagct 309
|||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 542 ctcgagtgcctcaaggagtggaacggcgagccactgccgctctgctgagct 492
Score = 167 bits (84), Expect = 2e-039
Identities = 191/225 (84%), Gaps = 15/225 (6%)
Strand = Plus / Minus
Query: 348 aaaaacaaaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttaca 399
|||||| |||||| ||||||||||||||| |||||||||||| || | ||||||
Sbjct: 441 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttaca 382
Query: 400 accagactagcagaagatgctctctatatctaccgtcgccttgtattattagtagctgaa 459
|||||||||||||||||| |||||||||| |||||| |||||||| || ||||||||
Sbjct: 381 accagactagcagaagatactctctatatttaccgttgccttgtactactagtagct--- 325
Query: 460 gtaagttcatgtgaatgttgtcgtg---ttcccgcagctgcgacgccatggcgtgcgacg 516
||||||||||||||||||| ||| |||||||||||||||||||||||| ||| | |
Sbjct: 324 -aaagttcatgtgaatgttgttgtgttcttcccgcagctgcgacgccatggcctgcaatg 266
Query: 517 tgcgcgttcttggctgtcgcagctgctgaaacttttgatggtttt 561
|| |||||||||||| |||||| ||||||||||||||||||||
Sbjct: 265 cgcatgttcttggctgttgcagctactgaaacttttgatggtttt 221
>gb|CW150733.1|CW150733 104_551_11143570_116_36314_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143570, DNA
sequence
Length = 657
Score = 180 bits (91), Expect = 1e-043
Identities = 255/305 (83%), Gaps = 5/305 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
||||||||||| ||||||| || || |||||||| || ||||| ||||||||| ||
Sbjct: 277 ccaaggtggccacgttcgaggaggagctccgcgcggcgctgccccgggaggtggacgcgg 336
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || ||| || ||||||||| ||||||||||
Sbjct: 337 cccgcgcggccgtggagaacggcacggccgcggtaccgaacaggatcgccgagtgccggt 396
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
| |||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct: 397 cgtacccgctgtacaggttcgtgcgcgaggagctcggcacggagtacctgaccggggaga 456
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| | |||||||||||| | ||||||||| |||||| | || |||| | ||||
Sbjct: 457 agacgaggt-cgcccggcgaggaggtgaacaaggtgttcgtgg-cgatgaacctgggcaa 514
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
||| ||||||| | |||||||||||||||||||||||||||| | |||||||||| |||
Sbjct: 515 gca-catcgacgccgtgctcgagtgcctcaaggagtggaacggtgagcccctgccgatct 573
Query: 302 gctga 306
|||||
Sbjct: 574 gctga 578
>gb|CW460986.1|CW460986 fsbb001f208h04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f208h04, DNA
sequence
Length = 698
Score = 180 bits (91), Expect = 1e-043
Identities = 255/305 (83%), Gaps = 5/305 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
||||||||||| ||||||| || || |||||||| || ||||| ||||||||| ||
Sbjct: 166 ccaaggtggccacgttcgaggaggagctccgcgcggcgctgccccgggaggtggacgcgg 225
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || ||| || ||||||||| ||||||||||
Sbjct: 226 cccgcgcggccgtggagaacggcacggccgcggtaccgaacaggatcgccgagtgccggt 285
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
| |||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct: 286 cgtacccgctgtacaggttcgtgcgcgaggagctcggcacggagtacctgaccggggaga 345
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| | |||||||||||| | ||||||||| |||||| | || |||| | ||||
Sbjct: 346 agacgaggt-cgcccggcgaggaggtgaacaaggtgttcgtgg-cgatgaacctgggcaa 403
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
||| ||||||| | |||||||||||||||||||||||||||| | |||||||||| |||
Sbjct: 404 gca-catcgacgccgtgctcgagtgcctcaaggagtggaacggtgagcccctgccgatct 462
Query: 302 gctga 306
|||||
Sbjct: 463 gctga 467
>gb|CW150734.1|CW150734 104_551_11143570_148_36313_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143570, DNA
sequence
Length = 652
Score = 172 bits (87), Expect = 3e-041
Identities = 171/195 (87%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 112 gagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctg 171
||||||||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct: 582 gagtgccggtcgtacccgctgtacaggttcgtgcgcgaggagctcggcacggagtacctg 523
Query: 172 accggcgagaggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatca 231
||||| |||| ||| |||| | |||||||||||| | ||||||||| |||||| | || |
Sbjct: 522 accggggagaagacgaggt-cgcccggcgaggaggtgaacaaggtgttcgtgg-cgatga 465
Query: 232 accagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgccc 291
||| | ||||||| ||||||| | |||||||||||||||||||||||||||| | ||||
Sbjct: 464 acctgggcaagca-catcgacgccgtgctcgagtgcctcaaggagtggaacggtgagccc 406
Query: 292 ctgccgctctgctga 306
|||||| ||||||||
Sbjct: 405 ctgccgatctgctga 391
>gb|CW460987.1|CW460987 fsbb001f208h04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f208h04, DNA
sequence
Length = 763
Score = 172 bits (87), Expect = 3e-041
Identities = 171/195 (87%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 112 gagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctg 171
||||||||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct: 707 gagtgccggtcgtacccgctgtacaggttcgtgcgcgaggagctcggcacggagtacctg 648
Query: 172 accggcgagaggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatca 231
||||| |||| ||| |||| | |||||||||||| | ||||||||| |||||| | || |
Sbjct: 647 accggggagaagacgaggt-cgcccggcgaggaggtgaacaaggtgttcgtgg-cgatga 590
Query: 232 accagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgccc 291
||| | ||||||| ||||||| | |||||||||||||||||||||||||||| | ||||
Sbjct: 589 acctgggcaagca-catcgacgccgtgctcgagtgcctcaaggagtggaacggtgagccc 531
Query: 292 ctgccgctctgctga 306
|||||| ||||||||
Sbjct: 530 ctgccgatctgctga 516
>gb|CL164480.1|CL164480 104_358_10807939_114_31814_307 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807939, DNA
sequence
Length = 754
Score = 170 bits (86), Expect = 1e-040
Identities = 182/210 (86%), Gaps = 3/210 (1%)
Strand = Plus / Minus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 359 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 300
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 299 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 241
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||| | ||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct: 240 gctcgttg-ccatcaaccaggggaaaca-catcgacccgctgctcgagtgcctcaaggag 183
Query: 277 tggaacggcgcgcccctgccgctctgctga 306
|||||||||| ||| ||||| ||||||||
Sbjct: 182 tggaacggcgagccactgcccatctgctga 153
>gb|CW091315.1|CW091315 104_453_10998477_114_33030_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998477, DNA
sequence
Length = 672
Score = 170 bits (86), Expect = 1e-040
Identities = 182/210 (86%), Gaps = 3/210 (1%)
Strand = Plus / Minus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 359 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 300
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 299 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 241
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||| | ||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct: 240 gctcgttg-ccatcaaccaggggaaaca-catcgacccgctgctcgagtgcctcaaggag 183
Query: 277 tggaacggcgcgcccctgccgctctgctga 306
|||||||||| ||| ||||| ||||||||
Sbjct: 182 tggaacggcgagccactgcccatctgctga 153
>gb|CW176959.1|CW176959 104_590_11158763_148_36591_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158763, DNA
sequence
Length = 609
Score = 170 bits (86), Expect = 1e-040
Identities = 182/210 (86%), Gaps = 3/210 (1%)
Strand = Plus / Minus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 429 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 370
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 369 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 311
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||| | ||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct: 310 gctcgttg-ccatcaaccaggggaaaca-catcgacccgctgctcgagtgcctcaaggag 253
Query: 277 tggaacggcgcgcccctgccgctctgctga 306
|||||||||| ||| ||||| ||||||||
Sbjct: 252 tggaacggcgagccactgcccatctgctga 223
>gb|BE358396.1|BE358396 DG1_29_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 666
Score = 170 bits (86), Expect = 1e-040
Identities = 182/210 (86%), Gaps = 3/210 (1%)
Strand = Plus / Plus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 424 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 483
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 484 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 542
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||| | ||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct: 543 gctcgttg-ccatcaaccaggggaaaca-catcgacccgctgctcgagtgcctcaaggag 600
Query: 277 tggaacggcgcgcccctgccgctctgctga 306
|||||||||| ||| ||||| ||||||||
Sbjct: 601 tggaacggcgagccactgcccatctgctga 630
>gb|BE358841.1|BE358841 DG1_32_D06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 170 bits (86), Expect = 1e-040
Identities = 182/210 (86%), Gaps = 3/210 (1%)
Strand = Plus / Plus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 238 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 297
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 298 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 356
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||| | ||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct: 357 gctcgttg-ccatcaaccaggggaaaca-catcgacccgctgctcgagtgcctcaaggag 414
Query: 277 tggaacggcgcgcccctgccgctctgctga 306
|||||||||| ||| ||||| ||||||||
Sbjct: 415 tggaacggcgagccactgcccatctgctga 444
>gb|BE360494.1|BE360494 DG1_63_B03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 517
Score = 170 bits (86), Expect = 1e-040
Identities = 182/210 (86%), Gaps = 3/210 (1%)
Strand = Plus / Plus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 229 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 288
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 289 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 347
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||| | ||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct: 348 gctcgttg-ccatcaaccaggggaaaca-catcgacccgctgctcgagtgcctcaaggag 405
Query: 277 tggaacggcgcgcccctgccgctctgctga 306
|||||||||| ||| ||||| ||||||||
Sbjct: 406 tggaacggcgagccactgcccatctgctga 435
>gb|BE918444.1|BE918444 OV1_3_G09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 629
Score = 170 bits (86), Expect = 1e-040
Identities = 182/210 (86%), Gaps = 3/210 (1%)
Strand = Plus / Plus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 245 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 304
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 305 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 363
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||| | ||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct: 364 gctcgttg-ccatcaaccaggggaaaca-catcgacccgctgctcgagtgcctcaaggag 421
Query: 277 tggaacggcgcgcccctgccgctctgctga 306
|||||||||| ||| ||||| ||||||||
Sbjct: 422 tggaacggcgagccactgcccatctgctga 451
>gb|BE364574.2|BE364574 PI1_15_H09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 575
Score = 170 bits (86), Expect = 1e-040
Identities = 182/210 (86%), Gaps = 3/210 (1%)
Strand = Plus / Plus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 144 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 203
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 204 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 262
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||| | ||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct: 263 gctcgttg-ccatcaaccaggggaaaca-catcgacccgctgctcgagtgcctcaaggag 320
Query: 277 tggaacggcgcgcccctgccgctctgctga 306
|||||||||| ||| ||||| ||||||||
Sbjct: 321 tggaacggcgagccactgcccatctgctga 350
>gb|CW439402.1|CW439402 fsbb001f157i10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f157i10, DNA
sequence
Length = 706
Score = 167 bits (84), Expect = 2e-039
Identities = 191/225 (84%), Gaps = 15/225 (6%)
Strand = Plus / Plus
Query: 348 aaaaacaaaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttaca 399
|||||| |||||| ||||||||||||||| |||||||||||| || | ||||||
Sbjct: 49 aaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttaca 108
Query: 400 accagactagcagaagatgctctctatatctaccgtcgccttgtattattagtagctgaa 459
|||||||||||||||||| |||||||||| |||||| |||||||| || ||||||||
Sbjct: 109 accagactagcagaagatactctctatatttaccgttgccttgtactactagtagct--- 165
Query: 460 gtaagttcatgtgaatgttgtcgtg---ttcccgcagctgcgacgccatggcgtgcgacg 516
||||||||||||||||||| ||| |||||||||||||||||||||||| ||| | |
Sbjct: 166 -aaagttcatgtgaatgttgttgtgttcttcccgcagctgcgacgccatggcctgcaatg 224
Query: 517 tgcgcgttcttggctgtcgcagctgctgaaacttttgatggtttt 561
|| |||||||||||| |||||| ||||||||||||||||||||
Sbjct: 225 cgcatgttcttggctgttgcagctactgaaacttttgatggtttt 269
>gb|BF481310.1|BF481310 FM1_18_D04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 411
Score = 163 bits (82), Expect = 2e-038
Identities = 181/210 (86%), Gaps = 3/210 (1%)
Strand = Plus / Plus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 18 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 77
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 78 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 136
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||| | |||||||| || | || || |||||||||||||||||||||||||||||||
Sbjct: 137 gctcgttg-ccatcaacaaggggaaaca-catcgacccgctgctcgagtgcctcaaggag 194
Query: 277 tggaacggcgcgcccctgccgctctgctga 306
|||||||||| ||| ||||| ||||||||
Sbjct: 195 tggaacggcgagccactgcccatctgctga 224
>gb|BG487962.1|BG487962 RHIZ2_61_D12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 693
Score = 163 bits (82), Expect = 2e-038
Identities = 181/210 (86%), Gaps = 3/210 (1%)
Strand = Plus / Plus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 240 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 299
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 300 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 358
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||| | |||||||| || | || || |||||||||||||||||||||||||||||||
Sbjct: 359 gctcgttg-ccatcaacaaggggaaaca-catcgacccgctgctcgagtgcctcaaggag 416
Query: 277 tggaacggcgcgcccctgccgctctgctga 306
|||||||||| ||| ||||| ||||||||
Sbjct: 417 tggaacggcgagccactgcccatctgctga 446
>gb|BG558058.1|BG558058 RHIZ2_66_B02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 426
Score = 163 bits (82), Expect = 2e-038
Identities = 181/210 (86%), Gaps = 3/210 (1%)
Strand = Plus / Plus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 63 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 122
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 123 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 181
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||| | |||||||| || | || || |||||||||||||||||||||||||||||||
Sbjct: 182 gctcgttg-ccatcaacaaggggaaaca-catcgacccgctgctcgagtgcctcaaggag 239
Query: 277 tggaacggcgcgcccctgccgctctgctga 306
|||||||||| ||| ||||| ||||||||
Sbjct: 240 tggaacggcgagccactgcccatctgctga 269
>gb|DN551872.1|DN551872 pSPR-RT-MR-H1_G04_C276 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1191
Score = 163 bits (82), Expect = 2e-038
Identities = 181/210 (86%), Gaps = 3/210 (1%)
Strand = Plus / Minus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 436 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 377
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 376 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 318
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||| | |||||||| || | || || |||||||||||||||||||||||||||||||
Sbjct: 317 gctcgttg-ccatcaacaaggggaaaca-catcgacccgctgctcgagtgcctcaaggag 260
Query: 277 tggaacggcgcgcccctgccgctctgctga 306
|||||||||| ||| ||||| ||||||||
Sbjct: 259 tggaacggcgagccactgcccatctgctga 230
>gb|BE367374.1|BE367374 PI1_4_E12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 326
Score = 151 bits (76), Expect = 9e-035
Identities = 108/116 (93%), Gaps = 2/116 (1%)
Strand = Plus / Plus
Query: 194 cccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaagcaccatcgacc 253
|||||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct: 17 cccggcgaggagctgaacaaggtgctggtggcc-atcaaccagcgcaagcacg-tcgacc 74
Query: 254 cgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctctgctgagct 309
||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct: 75 cgctgctcgagtgcctcaaggagtggaacggcgagccactgccgctttgctgagct 130
Score = 99.6 bits (50), Expect = 3e-019
Identities = 119/141 (84%), Gaps = 12/141 (8%)
Strand = Plus / Plus
Query: 355 aaagtatagcggctcaagacag--cgtttcaagatcgtt------tatttacaaccagac 406
|||||| ||||||||||||||| |||||||||||| || | |||||||||||||
Sbjct: 188 aaagtacagcggctcaagacagagcgtttcaagatcattgtgaagtttttacaaccagac 247
Query: 407 tagcagaagatgctctctatatctaccgtcgccttgtattattagtagctgaagtaagtt 466
||||||||||| |||||||||| |||||| |||||||| || |||||||| |||||
Sbjct: 248 tagcagaagatactctctatatttaccgttgccttgtactactagtagct----aaagtt 303
Query: 467 catgtgaatgttgtcgtgttc 487
|||||||||||||| ||||||
Sbjct: 304 catgtgaatgttgttgtgttc 324
>gb|AW282772.1|AW282772 LG1_290_F07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 237
Score = 143 bits (72), Expect = 2e-032
Identities = 147/171 (85%), Gaps = 7/171 (4%)
Strand = Plus / Plus
Query: 394 tttacaaccagactagcagaagatgctctctatatctaccgtcgccttgtattattagta 453
|||||| ||||||||||||||||| |||||||||| |||||| |||||||| || |||||
Sbjct: 30 tttacacccagactagcagaagatactctctatatttaccgttgccttgtactactagta 89
Query: 454 gctgaagtaagttcatgtgaatgttgtcgtg---ttcccgcagctgcgacgccatggcgt 510
||| ||||||||||||||||||| ||| |||||||||||||||||||||||| |
Sbjct: 90 gct----aaagttcatgtgaatgttgttgtgttcttcccgcagctgcgacgccatggcct 145
Query: 511 gcgacgtgcgcgttcttggctgtcgcagctgctgaaacttttgatggtttt 561
|| | | || ||| |||||||| |||||| ||||||||||||||||||||
Sbjct: 146 gcaatgcgcatgtttttggctgttgcagctactgaaacttttgatggtttt 196
>gb|CW221367.1|CW221367 104_656_11197867_116_37452_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197867, DNA
sequence
Length = 640
Score = 115 bits (58), Expect = 5e-024
Identities = 157/185 (84%), Gaps = 4/185 (2%)
Strand = Plus / Minus
Query: 112 gagtgccggtcctacccgctgtacc-ggttcgtgcgcgaggaggtcggcaccgagtacct 170
|||||||| || |||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 361 gagtgccgctcgtacccgctgtacnaggttcgtgcgcgaggagctcggcgccgagtacct 302
Query: 171 gaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatc 230
||||||||||| ||| ||| | ||||| |||||| | |||||||| | | | ||||
Sbjct: 301 gaccggcgagaagacgcggt-cgcccggggaggaggtggacaaggtggtgatcg-ccatg 244
Query: 231 aaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcc 290
|||||||||||||| ||||||||| ||||| |||||||||| || ||||| ||||||||
Sbjct: 243 aaccagcgcaagca-catcgacccactgctggagtgcctcagcgactggaaaggcgcgcc 185
Query: 291 cctgc 295
|||||
Sbjct: 184 cctgc 180
Score = 58.0 bits (29), Expect = 1e-006
Identities = 71/84 (84%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgc-gcgntgcccaaggaggtggagg-cn 61
|||||||||| ||||||||||||||| ||||||| | | ||||| | |||||||||| |
Sbjct: 465 ccaaggtggctgagttcgagcagcagctccgcgcggtgctgcccgacgaggtggaggccg 406
Query: 62 cncgngcgnccgtggagagcggca 85
| || ||| | |||||||||||||
Sbjct: 405 cacgcgcggctgtggagagcggca 382
>gb|AW677701.1|AW677701 WS1_10_H08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 571
Score = 107 bits (54), Expect = 1e-021
Identities = 165/198 (83%), Gaps = 3/198 (1%)
Strand = Plus / Minus
Query: 99 caacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 158
||||||||||| ||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 233 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 174
Query: 159 caccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgc 218
| ||| ||||||||||||||||| | || || |||||||||||||| ||||||||||
Sbjct: 173 cgccgtgtacctgaccggcgagaagctcaagt-cccccggcgaggagtgcaacaaggtgt 115
Query: 219 tcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtg 278
|| |||| | ||| | || |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 114 tcctggcgc-tcagcgagggcaagc-tcatcgaccccatgctcgagtgcctcaaggagtg 57
Query: 279 gaacggcgcgcccctgcc 296
| ||||| |||||||||
Sbjct: 56 ggacggcaagcccctgcc 39
>gb|BE359207.1|BE359207 DG1_39_C05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 393
Score = 107 bits (54), Expect = 1e-021
Identities = 165/198 (83%), Gaps = 3/198 (1%)
Strand = Plus / Plus
Query: 99 caacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 158
||||||||||| ||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 127 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 186
Query: 159 caccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgc 218
| ||| ||||||||||||||||| | || || |||||||||||||| ||||||||||
Sbjct: 187 cgccgtgtacctgaccggcgagaagctcaagt-cccccggcgaggagtgcaacaaggtgt 245
Query: 219 tcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtg 278
|| |||| | ||| | || |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 246 tcctggcgc-tcagcgagggcaagc-tcatcgaccccatgctcgagtgcctcaaggagtg 303
Query: 279 gaacggcgcgcccctgcc 296
| ||||| |||||||||
Sbjct: 304 ggacggcaagcccctgcc 321
>gb|BE361256.1|BE361256 DG1_70_D10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 343
Score = 107 bits (54), Expect = 1e-021
Identities = 165/198 (83%), Gaps = 3/198 (1%)
Strand = Plus / Plus
Query: 99 caacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 158
||||||||||| ||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 84 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 143
Query: 159 caccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgc 218
| ||| ||||||||||||||||| | || || |||||||||||||| ||||||||||
Sbjct: 144 cgccgtgtacctgaccggcgagaagctcaagt-cccccggcgaggagtgcaacaaggtgt 202
Query: 219 tcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtg 278
|| |||| | ||| | || |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 203 tcctggcgc-tcagcgagggcaagc-tcatcgaccccatgctcgagtgcctcaaggagtg 260
Query: 279 gaacggcgcgcccctgcc 296
| ||||| |||||||||
Sbjct: 261 ggacggcaagcccctgcc 278
>gb|BE366341.1|BE366341 PI1_32_D08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 622
Score = 107 bits (54), Expect = 1e-021
Identities = 165/198 (83%), Gaps = 3/198 (1%)
Strand = Plus / Plus
Query: 99 caacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 158
||||||||||| ||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 132 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 191
Query: 159 caccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgc 218
| ||| ||||||||||||||||| | || || |||||||||||||| ||||||||||
Sbjct: 192 cgccgtgtacctgaccggcgagaagctcaagt-cccccggcgaggagtgcaacaaggtgt 250
Query: 219 tcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtg 278
|| |||| | ||| | || |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 251 tcctggcgc-tcagcgagggcaagc-tcatcgaccccatgctcgagtgcctcaaggagtg 308
Query: 279 gaacggcgcgcccctgcc 296
| ||||| |||||||||
Sbjct: 309 ggacggcaagcccctgcc 326
>gb|BG047581.1|BG047581 OV1_25_F09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 577
Score = 107 bits (54), Expect = 1e-021
Identities = 165/198 (83%), Gaps = 3/198 (1%)
Strand = Plus / Plus
Query: 99 caacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 158
||||||||||| ||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 364 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 423
Query: 159 caccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgc 218
| ||| ||||||||||||||||| | || || |||||||||||||| ||||||||||
Sbjct: 424 cgccgtgtacctgaccggcgagaagctcaagt-cccccggcgaggagtgcaacaaggtgt 482
Query: 219 tcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtg 278
|| |||| | ||| | || |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 483 tcctggcgc-tcagcgagggcaagc-tcatcgaccccatgctcgagtgcctcaaggagtg 540
Query: 279 gaacggcgcgcccctgcc 296
| ||||| |||||||||
Sbjct: 541 ggacggcaagcccctgcc 558
>gb|BG047939.1|BG047939 OV1_25_F09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 679
Score = 107 bits (54), Expect = 1e-021
Identities = 165/198 (83%), Gaps = 3/198 (1%)
Strand = Plus / Plus
Query: 99 caacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 158
||||||||||| ||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 158 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 217
Query: 159 caccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgc 218
| ||| ||||||||||||||||| | || || |||||||||||||| ||||||||||
Sbjct: 218 cgccgtgtacctgaccggcgagaagctcaagt-cccccggcgaggagtgcaacaaggtgt 276
Query: 219 tcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtg 278
|| |||| | ||| | || |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 277 tcctggcgc-tcagcgagggcaagc-tcatcgaccccatgctcgagtgcctcaaggagtg 334
Query: 279 gaacggcgcgcccctgcc 296
| ||||| |||||||||
Sbjct: 335 ggacggcaagcccctgcc 352
>gb|BG932956.1|BG932956 DG1_69_D11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 667
Score = 107 bits (54), Expect = 1e-021
Identities = 165/198 (83%), Gaps = 3/198 (1%)
Strand = Plus / Plus
Query: 99 caacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 158
||||||||||| ||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 136 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 195
Query: 159 caccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgc 218
| ||| ||||||||||||||||| | || || |||||||||||||| ||||||||||
Sbjct: 196 cgccgtgtacctgaccggcgagaagctcaagt-cccccggcgaggagtgcaacaaggtgt 254
Query: 219 tcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtg 278
|| |||| | ||| | || |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 255 tcctggcgc-tcagcgagggcaagc-tcatcgaccccatgctcgagtgcctcaaggagtg 312
Query: 279 gaacggcgcgcccctgcc 296
| ||||| |||||||||
Sbjct: 313 ggacggcaagcccctgcc 330
>gb|BG948233.1|BG948233 IP1_10_H11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 639
Score = 107 bits (54), Expect = 1e-021
Identities = 165/198 (83%), Gaps = 3/198 (1%)
Strand = Plus / Plus
Query: 99 caacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 158
||||||||||| ||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 97 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 156
Query: 159 caccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgc 218
| ||| ||||||||||||||||| | || || |||||||||||||| ||||||||||
Sbjct: 157 cgccgtgtacctgaccggcgagaagctcaagt-cccccggcgaggagtgcaacaaggtgt 215
Query: 219 tcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtg 278
|| |||| | ||| | || |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 216 tcctggcgc-tcagcgagggcaagc-tcatcgaccccatgctcgagtgcctcaaggagtg 273
Query: 279 gaacggcgcgcccctgcc 296
| ||||| |||||||||
Sbjct: 274 ggacggcaagcccctgcc 291
>gb|BG948544.1|BG948544 IP1_10_H11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 107 bits (54), Expect = 1e-021
Identities = 165/198 (83%), Gaps = 3/198 (1%)
Strand = Plus / Plus
Query: 99 caacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 158
||||||||||| ||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 320 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 379
Query: 159 caccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgc 218
| ||| ||||||||||||||||| | || || |||||||||||||| ||||||||||
Sbjct: 380 cgccgtgtacctgaccggcgagaagctcaagt-cccccggcgaggagtgcaacaaggtgt 438
Query: 219 tcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtg 278
|| |||| | ||| | || |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 439 tcctggcgc-tcagcgagggcaagc-tcatcgaccccatgctcgagtgcctcaaggagtg 496
Query: 279 gaacggcgcgcccctgcc 296
| ||||| |||||||||
Sbjct: 497 ggacggcaagcccctgcc 514
>gb|CW246218.1|CW246218 104_707_11221250_116_35083_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221250, DNA
sequence
Length = 666
Score = 103 bits (52), Expect = 2e-020
Identities = 120/140 (85%), Gaps = 2/140 (1%)
Strand = Plus / Minus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 145 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 86
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| ||| ||||| |||||||||| ||| | | | |||||||||||||||||||||||
Sbjct: 85 ggagccgtctacctcaccggcgagaagacgcgct-ctcccggcgaggagctcaacaaggt 27
Query: 217 gctcgtggcccatcaaccag 236
|||||| | |||||||||||
Sbjct: 26 gctcgttg-ccatcaaccag 8
>gb|CW257415.1|CW257415 104_722_11227323_116_35152_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227323, DNA
sequence
Length = 618
Score = 101 bits (51), Expect = 8e-020
Identities = 86/95 (90%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 209 aacaaggtgctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcc 268
|||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||| |
Sbjct: 36 aacaagatgctcgtggcc-atcaaccagcgcaagcac-atcgacctactgctcgagtgtc 93
Query: 269 tcaaggagtggaacggcgcgcccctgccgctctgc 303
||||||||||||||| || ||||||||| ||||||
Sbjct: 94 tcaaggagtggaacgacgagcccctgccactctgc 128
>gb|BG102506.1|BG102506 RHIZ2_33_H09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 606
Score = 99.6 bits (50), Expect = 3e-019
Identities = 164/198 (82%), Gaps = 3/198 (1%)
Strand = Plus / Plus
Query: 99 caacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 158
||||||||||| ||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 268 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 327
Query: 159 caccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgc 218
| ||| ||||||||||||||||| | || || |||||||||||||| ||||||||||
Sbjct: 328 cgccgtgtacctgaccggcgagaagctcaagt-cccccggcgaggagtgcaacaaggtgt 386
Query: 219 tcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtg 278
|| ||| | |||| || |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 387 tcctgg-cgatcagtgagggcaagc-tcatcgaccccatgctcgagtgcctcaaggagtg 444
Query: 279 gaacggcgcgcccctgcc 296
| ||||| |||||||||
Sbjct: 445 ggacggcaagcccctgcc 462
>gb|CW091307.1|CW091307 104_453_10998472_116_33035_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998472, DNA
sequence
Length = 588
Score = 93.7 bits (47), Expect = 2e-017
Identities = 86/95 (90%), Gaps = 3/95 (3%)
Strand = Plus / Minus
Query: 209 aacaaggtgctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcc 268
||||||||| |||||||| |||||||||||| ||||| ||| || |||||||||||||||
Sbjct: 251 aacaaggtggtcgtggcc-atcaaccagcgctagcac-atc-acacgctgctcgagtgcc 195
Query: 269 tcaaggagtggaacggcgcgcccctgccgctctgc 303
||||||||||||||| || |||||||| |||||||
Sbjct: 194 tcaaggagtggaacgtcgagcccctgctgctctgc 160
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 468 atgtgaatgttgtcgtgttcccgcagctgcgacgccat 505
||||||||||||| ||||||||||| |||||| ||||
Sbjct: 38 atgtgaatgttgttatgttcccgcagatgcgacaccat 1
>gb|CW389640.1|CW389640 fsbb001f074o21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f074o21, DNA
sequence
Length = 736
Score = 93.7 bits (47), Expect = 2e-017
Identities = 86/95 (90%), Gaps = 3/95 (3%)
Strand = Plus / Minus
Query: 209 aacaaggtgctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcc 268
||||||||| |||||||| |||||||||||| ||||| ||| || |||||||||||||||
Sbjct: 196 aacaaggtggtcgtggcc-atcaaccagcgctagcac-atc-acacgctgctcgagtgcc 140
Query: 269 tcaaggagtggaacggcgcgcccctgccgctctgc 303
||||||||||||||| || |||||||| |||||||
Sbjct: 139 tcaaggagtggaacgtcgagcccctgctgctctgc 105
>gb|CW442302.1|CW442302 fsbb001f161o10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f161o10, DNA
sequence
Length = 459
Score = 93.7 bits (47), Expect = 2e-017
Identities = 96/111 (86%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 112 gagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctg 171
|||||||| ||||||||||| ||||| ||||||||| |||||||||| ||| |||||
Sbjct: 117 gagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctc 58
Query: 172 accggcgagaggaccaggtccccccggcgaggagctcaacaaggtgctcgt 222
|||||||||| ||| | | | |||||||||||||||||||||||||||||
Sbjct: 57 accggcgagaagacgcgct-ctcccggcgaggagctcaacaaggtgctcgt 8
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 177,043
Number of Sequences: 832831
Number of extensions: 177043
Number of successful extensions: 50473
Number of sequences better than 0.5: 138
Number of HSP's better than 0.5 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49935
Number of HSP's gapped (non-prelim): 394
length of query: 638
length of database: 491,359,669
effective HSP length: 19
effective length of query: 619
effective length of database: 475,535,880
effective search space: 294356709720
effective search space used: 294356709720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)